Wall clock time and date at job start Mon Mar 30 2020 08:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38247 * 119.98373 * 2 1 4 4 C 1.38302 * 120.00092 * 180.25201 * 3 2 1 5 5 Cl 1.73600 * 120.02000 * 179.72096 * 4 3 2 6 6 C 1.38493 * 119.96032 * 359.74618 * 4 3 2 7 7 Cl 1.73597 * 120.01449 * 179.97438 * 6 4 3 8 8 C 1.38298 * 119.95962 * 359.97438 * 6 4 3 9 9 C 1.38216 * 119.97875 * 179.74270 * 2 1 3 10 10 C 1.50700 * 119.98261 * 0.02562 * 9 2 1 11 11 H 1.09004 * 109.47210 * 324.72531 * 10 9 2 12 12 N 1.46899 * 109.47483 * 204.72200 * 10 9 2 13 13 C 1.50702 * 109.46869 * 84.72238 * 10 9 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.09005 * 109.47148 * 270.25752 * 1 2 3 22 22 H 1.09001 * 109.47319 * 30.25571 * 1 2 3 23 23 H 1.08994 * 109.47266 * 150.25503 * 1 2 3 24 24 H 1.08005 * 120.00042 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.99788 * 180.02562 * 8 6 4 26 26 H 1.00902 * 111.00292 * 176.04974 * 12 10 9 27 27 H 1.00903 * 111.00048 * 300.00270 * 12 10 9 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1974 0.0000 4 6 3.5809 1.1979 -0.0053 5 17 4.4489 2.7012 -0.0126 6 6 4.2729 -0.0018 -0.0052 7 17 6.0088 -0.0029 -0.0125 8 6 3.5801 -1.1987 0.0006 9 6 2.1976 -1.1972 0.0054 10 6 1.4432 -2.5018 0.0107 11 1 0.5348 -2.3939 0.6033 12 7 2.2869 -3.5530 0.5947 13 6 1.0792 -2.8772 -1.4027 14 1 1.3658 -2.2356 -2.2228 15 6 0.3856 -4.0431 -1.6495 16 7 0.0369 -4.8247 -0.6509 17 14 -0.0588 -4.5123 -3.4021 18 1 1.1816 -4.6559 -4.2058 19 1 -0.7980 -5.8003 -3.3974 20 1 -0.9139 -3.4535 -3.9964 21 1 -0.3634 0.0046 1.0277 22 1 -0.3634 0.8877 -0.5178 23 1 -0.3633 -0.8922 -0.5098 24 1 1.6576 2.1327 0.0004 25 1 4.1191 -2.1346 0.0011 26 1 1.7813 -4.4231 0.6687 27 1 3.1360 -3.6724 0.0628 28 1 -0.4513 -5.6447 -0.8245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238498088.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:36 Heat of formation + Delta-G solvation = -6.216544 kcal Electronic energy + Delta-G solvation = -14945.640329 eV Core-core repulsion = 12240.356214 eV Total energy + Delta-G solvation = -2705.284115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.30652 -36.49006 -36.17977 -34.64073 -32.09966 -31.73045 -29.33717 -26.44177 -26.08110 -23.33560 -21.31724 -19.96961 -16.72756 -16.64087 -15.75852 -15.06199 -14.49376 -14.14158 -13.84506 -13.17405 -12.91675 -12.76566 -12.58401 -11.93910 -11.72407 -11.59080 -11.31284 -11.13783 -10.94604 -10.88568 -10.62458 -10.55826 -10.48903 -10.05927 -9.71058 -8.79339 -8.35135 -7.94332 -7.34215 -6.21776 -4.39356 1.49327 1.64831 2.19627 2.58071 3.17177 3.23059 3.26065 3.98059 4.25757 5.00150 5.06615 5.38053 5.59509 5.63817 5.82633 6.06060 6.19307 6.21296 6.31501 6.52524 6.67080 6.75215 6.99877 7.21246 7.52718 7.62078 7.92611 8.51768 8.78576 8.96975 9.33091 10.75759 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.006290 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.773635 B = 4450.443778 C = 4806.607796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.106 4.106 4 C -0.050 4.050 5 Cl -0.075 7.075 6 C -0.036 4.036 7 Cl -0.072 7.072 8 C -0.089 4.089 9 C -0.011 4.011 10 C 0.240 3.760 11 H 0.058 0.942 12 N -0.852 5.852 13 C -0.547 4.547 14 H 0.057 0.943 15 C 0.070 3.930 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.359 0.641 27 H 0.312 0.688 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 9.035 1.324 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.125 4.125 4 C -0.077 4.077 5 Cl -0.047 7.047 6 C -0.063 4.063 7 Cl -0.043 7.043 8 C -0.108 4.108 9 C -0.012 4.012 10 C 0.130 3.870 11 H 0.076 0.924 12 N -0.383 5.383 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.114 0.886 24 H 0.150 0.850 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.122 0.878 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.719 9.450 2.033 10.757 hybrid contribution -0.100 -0.611 -1.956 2.052 sum 4.619 8.840 0.077 9.974 Atomic orbital electron populations 1.20870 0.90348 1.03980 1.02199 1.19811 0.96920 0.91485 0.98924 1.20770 0.90817 0.98743 1.02185 1.20504 0.92234 0.85352 1.09654 1.98330 1.76945 1.32192 1.97193 1.20723 0.84282 0.93672 1.07618 1.98335 1.10036 1.98928 1.97035 1.20890 0.94278 0.95821 0.99810 1.20524 0.92509 0.96879 0.91334 1.18060 0.90968 0.83936 0.93998 0.92388 1.59574 1.09223 1.13912 1.55593 1.21677 1.37173 1.06900 0.92862 0.92504 1.24998 0.94707 0.96128 0.97521 1.69722 1.39040 1.13359 1.30759 0.86555 0.78743 0.77810 0.84370 1.20143 1.21138 1.20028 0.91494 0.92343 0.88584 0.85035 0.84143 0.82472 0.87810 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.22 36.00 0.33 -1.59 15 2 C -0.07 -1.27 5.88 -104.63 -0.62 -1.89 15 3 C -0.11 -1.72 9.49 -39.55 -0.38 -2.10 15 4 C -0.05 -0.83 6.32 -39.46 -0.25 -1.08 15 5 Cl -0.08 -1.10 27.96 -51.86 -1.45 -2.55 15 6 C -0.04 -0.62 6.32 -39.47 -0.25 -0.87 15 7 Cl -0.07 -1.13 27.96 -51.86 -1.45 -2.58 15 8 C -0.09 -1.68 9.05 -39.56 -0.36 -2.04 15 9 C -0.01 -0.23 4.99 -104.63 -0.52 -0.75 15 10 C 0.24 5.48 2.27 -70.02 -0.16 5.32 15 11 H 0.06 1.43 7.00 -51.93 -0.36 1.07 15 12 N -0.85 -18.99 8.78 -6.65 -0.06 -19.04 15 13 C -0.55 -13.53 7.91 -34.44 -0.27 -13.81 15 14 H 0.06 1.44 7.74 -52.49 -0.41 1.04 15 15 C 0.07 1.75 5.38 -17.82 -0.10 1.66 15 16 N -0.89 -22.97 11.53 55.43 0.64 -22.33 15 17 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 15 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 0.81 8.09 -51.93 -0.42 0.39 15 23 H 0.10 1.82 6.14 -51.93 -0.32 1.50 15 24 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.14 2.61 6.29 -52.48 -0.33 2.28 15 26 H 0.36 8.57 7.07 -39.29 -0.28 8.30 15 27 H 0.31 6.63 7.20 -39.29 -0.28 6.34 15 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 LS Contribution 267.97 15.07 4.04 4.04 Total: -1.00 -24.65 267.97 -8.25 -32.90 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -2.38 Total: 11.83 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.57 Total: -17.15 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.58 Total: -41.37 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -2.90 Total: -5.13 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -24.65 -8.25 -32.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498088.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.683 kcal (2) G-P(sol) polarization free energy of solvation -24.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds