Wall clock time and date at job start Mon Mar 30 2020 08:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38247 * 119.98373 * 2 1 4 4 C 1.38302 * 120.00092 * 180.25201 * 3 2 1 5 5 Cl 1.73600 * 120.02000 * 179.72096 * 4 3 2 6 6 C 1.38493 * 119.96032 * 359.74618 * 4 3 2 7 7 Cl 1.73597 * 120.01449 * 179.97438 * 6 4 3 8 8 C 1.38298 * 119.95962 * 359.97438 * 6 4 3 9 9 C 1.38216 * 119.97875 * 179.74270 * 2 1 3 10 10 C 1.50700 * 119.98261 * 0.02562 * 9 2 1 11 11 H 1.09004 * 109.47210 * 324.72531 * 10 9 2 12 12 N 1.46899 * 109.47483 * 204.72200 * 10 9 2 13 13 C 1.50702 * 109.46869 * 84.72238 * 10 9 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.09005 * 109.47148 * 270.25752 * 1 2 3 22 22 H 1.09001 * 109.47319 * 30.25571 * 1 2 3 23 23 H 1.08994 * 109.47266 * 150.25503 * 1 2 3 24 24 H 1.08005 * 120.00042 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.99788 * 180.02562 * 8 6 4 26 26 H 1.00902 * 111.00292 * 176.04974 * 12 10 9 27 27 H 1.00903 * 111.00048 * 300.00270 * 12 10 9 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1974 0.0000 4 6 3.5809 1.1979 -0.0053 5 17 4.4489 2.7012 -0.0126 6 6 4.2729 -0.0018 -0.0052 7 17 6.0088 -0.0029 -0.0125 8 6 3.5801 -1.1987 0.0006 9 6 2.1976 -1.1972 0.0054 10 6 1.4432 -2.5018 0.0107 11 1 0.5348 -2.3939 0.6033 12 7 2.2869 -3.5530 0.5947 13 6 1.0792 -2.8772 -1.4027 14 1 1.3658 -2.2356 -2.2228 15 6 0.3856 -4.0431 -1.6495 16 7 0.0369 -4.8247 -0.6509 17 14 -0.0588 -4.5123 -3.4021 18 1 1.1816 -4.6559 -4.2058 19 1 -0.7980 -5.8003 -3.3974 20 1 -0.9139 -3.4535 -3.9964 21 1 -0.3634 0.0046 1.0277 22 1 -0.3634 0.8877 -0.5178 23 1 -0.3633 -0.8922 -0.5098 24 1 1.6576 2.1327 0.0004 25 1 4.1191 -2.1346 0.0011 26 1 1.7813 -4.4231 0.6687 27 1 3.1360 -3.6724 0.0628 28 1 -0.4513 -5.6447 -0.8245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238498088.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:34 Heat of formation + Delta-G solvation = -19.130872 kcal Electronic energy + Delta-G solvation = -14946.200336 eV Core-core repulsion = 12240.356214 eV Total energy + Delta-G solvation = -2705.844122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71779 -37.83362 -37.45677 -36.32836 -33.53622 -33.46181 -30.87145 -28.06485 -27.66394 -24.96477 -22.74101 -21.51222 -18.58527 -18.12483 -17.18141 -16.73152 -16.03011 -15.75339 -15.25201 -14.64471 -14.50606 -14.33174 -13.89968 -13.49276 -13.30059 -12.96685 -12.83860 -12.78498 -12.60395 -12.35784 -12.13260 -12.02268 -11.81344 -11.65251 -11.37921 -10.69812 -9.72866 -9.40733 -9.14770 -8.11494 -6.36038 0.09884 0.26760 0.89539 1.25455 1.39985 1.42500 1.48922 2.35836 2.61529 3.06962 3.74858 3.97189 4.18528 4.26216 4.44268 4.64487 4.76201 4.88206 4.90847 5.05348 5.19465 5.27259 5.46968 5.65532 5.77100 5.88360 6.07038 6.63603 6.91962 7.09644 7.39261 8.82737 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.006290 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.773635 B = 4450.443778 C = 4806.607796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 C -0.097 4.097 4 C -0.050 4.050 5 Cl -0.053 7.053 6 C -0.042 4.042 7 Cl -0.057 7.057 8 C -0.097 4.097 9 C -0.039 4.039 10 C 0.247 3.753 11 H 0.033 0.967 12 N -0.847 5.847 13 C -0.551 4.551 14 H 0.046 0.954 15 C 0.030 3.970 16 N -0.912 5.912 17 Si 0.952 3.048 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.273 1.273 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.164 0.836 25 H 0.136 0.864 26 H 0.348 0.652 27 H 0.317 0.683 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 10.694 0.883 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.077 4.077 5 Cl -0.024 7.024 6 C -0.070 4.070 7 Cl -0.028 7.028 8 C -0.116 4.116 9 C -0.040 4.040 10 C 0.137 3.863 11 H 0.050 0.950 12 N -0.376 5.376 13 C -0.591 4.591 14 H 0.064 0.936 15 C -0.171 4.171 16 N -0.551 5.551 17 Si 0.778 3.222 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.198 1.198 21 H 0.096 0.904 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.181 0.819 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.100 11.124 1.592 12.341 hybrid contribution -0.139 -1.034 -1.790 2.072 sum 4.961 10.090 -0.198 11.245 Atomic orbital electron populations 1.20835 0.89432 1.03787 1.02912 1.20017 0.97757 0.91459 0.98560 1.21034 0.90754 0.99183 1.00600 1.20678 0.92690 0.86028 1.08312 1.98341 1.76505 1.30530 1.97007 1.20751 0.85204 0.93555 1.07482 1.98337 1.08611 1.98905 1.96949 1.20832 0.93937 0.96432 1.00378 1.20366 0.93113 0.96443 0.94112 1.17832 0.90584 0.85446 0.92482 0.94962 1.59555 1.09181 1.13279 1.55621 1.21835 1.36925 1.06710 0.93630 0.93575 1.25608 0.94827 0.96242 1.00439 1.69811 1.39596 1.13588 1.32078 0.85710 0.78282 0.77457 0.80772 1.20231 1.20937 1.19772 0.90363 0.89415 0.91733 0.81885 0.84616 0.83663 0.87262 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 9.22 71.24 0.66 -2.92 15 2 C -0.08 -2.69 5.88 -19.87 -0.12 -2.80 15 3 C -0.10 -2.89 9.49 22.29 0.21 -2.68 15 4 C -0.05 -1.53 6.32 22.35 0.14 -1.39 15 5 Cl -0.05 -1.38 27.96 -2.72 -0.08 -1.46 15 6 C -0.04 -1.42 6.32 22.34 0.14 -1.28 15 7 Cl -0.06 -1.69 27.96 -2.72 -0.08 -1.76 15 8 C -0.10 -3.63 9.05 22.29 0.20 -3.43 15 9 C -0.04 -1.59 4.99 -19.87 -0.10 -1.68 15 10 C 0.25 11.49 2.27 43.42 0.10 11.59 15 11 H 0.03 1.66 7.00 -2.38 -0.02 1.64 15 12 N -0.85 -38.54 8.78 -174.95 -1.54 -40.08 15 13 C -0.55 -27.72 7.91 25.60 0.20 -27.52 15 14 H 0.05 2.37 7.74 -2.91 -0.02 2.35 15 15 C 0.03 1.51 5.38 84.66 0.46 1.96 15 16 N -0.91 -47.70 11.53 21.45 0.25 -47.45 15 17 Si 0.95 40.95 29.54 68.60 2.03 42.97 15 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 21 H 0.08 2.26 8.14 -2.38 -0.02 2.24 15 22 H 0.09 2.20 8.09 -2.39 -0.02 2.18 15 23 H 0.06 2.46 6.14 -2.39 -0.01 2.45 15 24 H 0.16 3.77 8.06 -2.91 -0.02 3.75 15 25 H 0.14 5.08 6.29 -2.91 -0.02 5.06 15 26 H 0.35 17.07 7.07 -89.69 -0.63 16.44 15 27 H 0.32 13.73 7.20 -89.69 -0.65 13.08 15 28 H 0.27 13.49 8.31 -92.70 -0.77 12.72 15 Total: -1.00 -51.77 267.97 2.41 -49.36 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.06 Total: 28.58 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 1.89 Total: -30.15 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.29 Total: -87.53 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 17 Polarization: -3.07 SS G_CDS: -0.15 Total: -3.22 kcal Total: -51.77 2.41 -49.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238498088.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.225 kcal (2) G-P(sol) polarization free energy of solvation -51.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds