Wall clock time and date at job start Mon Mar 30 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46549 * 2 1 4 4 H 1.08997 * 109.47472 * 304.95870 * 3 2 1 5 5 C 1.50710 * 109.46840 * 184.96023 * 3 2 1 6 6 H 1.08003 * 119.99872 * 239.99871 * 5 3 2 7 7 C 1.37881 * 119.99857 * 60.00176 * 5 3 2 8 8 N 1.31508 * 120.00010 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99688 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46958 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46834 * 119.99745 * 9 7 5 12 12 H 1.48498 * 109.46896 * 240.00132 * 9 7 5 13 13 S 1.81398 * 109.47408 * 64.96551 * 3 2 1 14 14 O 1.42105 * 109.46486 * 290.77854 * 13 3 2 15 15 C 1.81399 * 103.00387 * 174.39298 * 13 3 2 16 16 H 1.09002 * 109.46366 * 297.38745 * 15 13 3 17 17 C 1.52996 * 109.47194 * 57.38380 * 15 13 3 18 18 C 1.53003 * 109.46782 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47012 * 299.99872 * 18 17 15 20 20 C 1.52997 * 109.47037 * 60.00079 * 19 18 17 21 21 H 1.09006 * 109.46894 * 60.00096 * 20 19 18 22 22 C 1.52996 * 109.47133 * 179.97438 * 20 19 18 23 23 C 1.52992 * 109.47260 * 300.00205 * 20 19 18 24 24 H 1.09001 * 109.46969 * 293.63061 * 1 2 3 25 25 H 1.08995 * 109.47633 * 53.63914 * 1 2 3 26 26 H 1.09003 * 109.46988 * 173.63863 * 1 2 3 27 27 H 1.09000 * 109.47064 * 240.00556 * 2 1 3 28 28 H 1.08994 * 109.47689 * 120.00104 * 2 1 3 29 29 H 0.96997 * 120.00128 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47334 * 60.00606 * 17 15 13 31 31 H 1.09003 * 109.47073 * 300.00191 * 17 15 13 32 32 H 1.09000 * 109.46928 * 179.97438 * 18 17 15 33 33 H 1.08998 * 109.47555 * 59.99813 * 18 17 15 34 34 H 1.08998 * 109.46913 * 300.00334 * 19 18 17 35 35 H 1.09004 * 109.46875 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47327 * 60.00018 * 22 20 19 37 37 H 1.09000 * 109.47343 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.47460 * 300.00501 * 22 20 19 39 39 H 1.09000 * 109.47033 * 180.02562 * 23 20 19 40 40 H 1.09006 * 109.47078 * 299.99778 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6058 1.9814 -0.8422 5 6 3.5419 1.4444 -0.1229 6 1 4.1467 1.8892 0.6536 7 6 4.1440 0.8783 -1.2265 8 7 3.4076 0.3371 -2.1722 9 14 6.0059 0.8799 -1.3784 10 1 6.5988 1.5443 -0.1901 11 1 6.4971 -0.5191 -1.4593 12 1 6.4016 1.6154 -2.6063 13 16 1.5590 2.2539 1.5495 14 8 0.1509 2.4437 1.5675 15 6 2.3850 3.8652 1.4400 16 1 3.4646 3.7185 1.4082 17 6 1.9306 4.5858 0.1691 18 6 2.6278 5.9446 0.0765 19 6 2.2639 6.7890 1.2995 20 6 2.7182 6.0683 2.5703 21 1 3.7979 5.9214 2.5383 22 6 2.3549 6.9129 3.7931 23 6 2.0212 4.7095 2.6629 24 1 -0.3633 0.4119 0.9415 25 1 -0.3634 0.6092 -0.8275 26 1 -0.3633 -1.0214 -0.1139 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8312 -0.0615 -2.9484 30 1 0.8510 4.7325 0.2009 31 1 2.1902 3.9845 -0.7021 32 1 2.3044 6.4579 -0.8291 33 1 3.7073 5.7978 0.0446 34 1 1.1843 6.9359 1.3313 35 1 2.7602 7.7572 1.2332 36 1 1.2754 7.0602 3.8253 37 1 2.6790 6.3996 4.6985 38 1 2.8519 7.8808 3.7269 39 1 2.3445 4.1963 3.5685 40 1 0.9415 4.8564 2.6948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251345011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:53 Heat of formation + Delta-G solvation = -80.653718 kcal Electronic energy + Delta-G solvation = -18502.999590 eV Core-core repulsion = 15828.747374 eV Total energy + Delta-G solvation = -2674.252216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.27870 -34.70344 -34.50633 -32.33728 -31.58439 -30.44855 -27.55577 -26.11217 -23.25758 -22.44393 -21.10286 -20.29064 -19.41769 -16.83231 -16.11222 -15.48292 -14.95912 -14.43345 -14.25312 -13.98508 -13.64135 -13.42750 -13.01658 -12.58465 -12.24012 -12.18918 -11.92435 -11.69337 -11.49065 -11.36983 -11.21834 -11.01246 -10.85260 -10.67941 -10.63287 -10.52411 -10.16585 -10.10573 -9.99976 -9.81109 -9.72177 -9.15259 -8.58642 -8.28806 -6.99987 -6.11834 -4.25058 2.70181 3.21644 3.30845 3.32280 3.81517 4.31975 4.84454 4.94551 5.02995 5.10306 5.17095 5.45225 5.48803 5.69561 5.75525 5.81085 5.85165 5.91083 5.99512 6.07912 6.15386 6.20721 6.24539 6.32158 6.45780 6.50011 6.50988 6.51555 6.60619 6.72686 6.85304 6.90315 7.06771 7.08796 7.46289 7.68147 7.81023 8.15183 8.77460 9.40621 10.92583 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.008174 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.283327 B = 3424.726529 C = 4357.432705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.210 4.210 4 H 0.047 0.953 5 C -0.506 4.506 6 H 0.070 0.930 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.892 3.108 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.285 1.285 13 S 1.171 4.829 14 O -0.882 6.882 15 C -0.387 4.387 16 H 0.120 0.880 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.087 4.087 21 H 0.071 0.929 22 C -0.147 4.147 23 C -0.088 4.088 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.043 0.957 29 H 0.262 0.738 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 7.124 8.466 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.139 4.139 3 C -0.332 4.332 4 H 0.065 0.935 5 C -0.545 4.545 6 H 0.088 0.912 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.719 3.281 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.211 1.211 13 S 1.377 4.623 14 O -0.878 6.878 15 C -0.504 4.504 16 H 0.139 0.861 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.107 4.107 21 H 0.089 0.911 22 C -0.204 4.204 23 C -0.127 4.127 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.763 6.700 9.065 11.298 hybrid contribution 0.375 1.102 -2.248 2.532 sum 1.138 7.802 6.817 10.423 Atomic orbital electron populations 1.22083 0.98775 0.99625 1.01753 1.21308 0.91764 0.97421 1.03441 1.24649 1.01953 0.99702 1.06895 0.93493 1.20609 0.88400 1.39209 1.06293 0.91197 1.24951 0.98126 0.94722 0.95478 1.69892 1.35030 1.37522 1.09294 0.86532 0.85356 0.77925 0.78258 1.19279 1.20841 1.21136 1.69523 0.90600 0.92663 1.09515 1.92947 1.26762 1.83027 1.85045 1.27338 1.10538 1.14305 0.98221 0.86144 1.21499 0.99266 0.96286 0.97508 1.21488 1.00763 0.95985 0.96933 1.21571 1.00685 0.97843 0.94809 1.21102 1.00334 0.94962 0.94294 0.91091 1.21843 1.01282 0.99436 0.97850 1.21253 1.00315 0.94674 0.96409 0.92537 0.93887 0.94436 0.87899 0.93784 0.92822 0.92849 0.90385 0.92822 0.91851 0.92550 0.92722 0.92972 0.92702 0.93105 0.91545 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.36 37.16 0.35 -3.24 16 2 C -0.10 -2.29 5.24 -26.73 -0.14 -2.43 16 3 C -0.21 -4.89 1.60 -27.88 -0.04 -4.94 16 4 H 0.05 1.25 7.25 -51.93 -0.38 0.87 16 5 C -0.51 -12.13 8.05 -34.43 -0.28 -12.40 16 6 H 0.07 1.54 6.68 -52.48 -0.35 1.19 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 S 1.17 22.86 11.76 -107.50 -1.26 21.59 16 14 O -0.88 -20.88 15.98 -35.23 -0.56 -21.44 16 15 C -0.39 -6.71 2.22 -26.74 -0.06 -6.77 16 16 H 0.12 2.03 7.05 -51.92 -0.37 1.66 16 17 C -0.11 -1.99 5.01 -26.73 -0.13 -2.13 16 18 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 19 C -0.11 -1.52 5.20 -26.73 -0.14 -1.66 16 20 C -0.09 -1.14 2.72 -90.63 -0.25 -1.39 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 22 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 23 C -0.09 -1.32 4.49 -26.74 -0.12 -1.44 16 24 H 0.06 1.23 6.04 -51.93 -0.31 0.92 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.64 6.73 -51.93 -0.35 1.29 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -29.27 316.20 -9.30 -38.57 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.12 Total: 2.96 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: -0.72 Total: -37.85 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.63 Total: -23.13 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.56 Total: -21.44 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 22.86 SS G_CDS: -1.26 Total: 21.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.27 -9.30 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251345011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.088 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds