Wall clock time and date at job start Mon Mar 30 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46549 * 2 1 4 4 H 1.08997 * 109.47472 * 304.95870 * 3 2 1 5 5 C 1.50710 * 109.46840 * 184.96023 * 3 2 1 6 6 H 1.08003 * 119.99872 * 239.99871 * 5 3 2 7 7 C 1.37881 * 119.99857 * 60.00176 * 5 3 2 8 8 N 1.31508 * 120.00010 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99688 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46958 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46834 * 119.99745 * 9 7 5 12 12 H 1.48498 * 109.46896 * 240.00132 * 9 7 5 13 13 S 1.81398 * 109.47408 * 64.96551 * 3 2 1 14 14 O 1.42105 * 109.46486 * 290.77854 * 13 3 2 15 15 C 1.81399 * 103.00387 * 174.39298 * 13 3 2 16 16 H 1.09002 * 109.46366 * 297.38745 * 15 13 3 17 17 C 1.52996 * 109.47194 * 57.38380 * 15 13 3 18 18 C 1.53003 * 109.46782 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47012 * 299.99872 * 18 17 15 20 20 C 1.52997 * 109.47037 * 60.00079 * 19 18 17 21 21 H 1.09006 * 109.46894 * 60.00096 * 20 19 18 22 22 C 1.52996 * 109.47133 * 179.97438 * 20 19 18 23 23 C 1.52992 * 109.47260 * 300.00205 * 20 19 18 24 24 H 1.09001 * 109.46969 * 293.63061 * 1 2 3 25 25 H 1.08995 * 109.47633 * 53.63914 * 1 2 3 26 26 H 1.09003 * 109.46988 * 173.63863 * 1 2 3 27 27 H 1.09000 * 109.47064 * 240.00556 * 2 1 3 28 28 H 1.08994 * 109.47689 * 120.00104 * 2 1 3 29 29 H 0.96997 * 120.00128 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47334 * 60.00606 * 17 15 13 31 31 H 1.09003 * 109.47073 * 300.00191 * 17 15 13 32 32 H 1.09000 * 109.46928 * 179.97438 * 18 17 15 33 33 H 1.08998 * 109.47555 * 59.99813 * 18 17 15 34 34 H 1.08998 * 109.46913 * 300.00334 * 19 18 17 35 35 H 1.09004 * 109.46875 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47327 * 60.00018 * 22 20 19 37 37 H 1.09000 * 109.47343 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.47460 * 300.00501 * 22 20 19 39 39 H 1.09000 * 109.47033 * 180.02562 * 23 20 19 40 40 H 1.09006 * 109.47078 * 299.99778 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6058 1.9814 -0.8422 5 6 3.5419 1.4444 -0.1229 6 1 4.1467 1.8892 0.6536 7 6 4.1440 0.8783 -1.2265 8 7 3.4076 0.3371 -2.1722 9 14 6.0059 0.8799 -1.3784 10 1 6.5988 1.5443 -0.1901 11 1 6.4971 -0.5191 -1.4593 12 1 6.4016 1.6154 -2.6063 13 16 1.5590 2.2539 1.5495 14 8 0.1509 2.4437 1.5675 15 6 2.3850 3.8652 1.4400 16 1 3.4646 3.7185 1.4082 17 6 1.9306 4.5858 0.1691 18 6 2.6278 5.9446 0.0765 19 6 2.2639 6.7890 1.2995 20 6 2.7182 6.0683 2.5703 21 1 3.7979 5.9214 2.5383 22 6 2.3549 6.9129 3.7931 23 6 2.0212 4.7095 2.6629 24 1 -0.3633 0.4119 0.9415 25 1 -0.3634 0.6092 -0.8275 26 1 -0.3633 -1.0214 -0.1139 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8312 -0.0615 -2.9484 30 1 0.8510 4.7325 0.2009 31 1 2.1902 3.9845 -0.7021 32 1 2.3044 6.4579 -0.8291 33 1 3.7073 5.7978 0.0446 34 1 1.1843 6.9359 1.3313 35 1 2.7602 7.7572 1.2332 36 1 1.2754 7.0602 3.8253 37 1 2.6790 6.3996 4.6985 38 1 2.8519 7.8808 3.7269 39 1 2.3445 4.1963 3.5685 40 1 0.9415 4.8564 2.6948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251345011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:53 Heat of formation + Delta-G solvation = -96.999842 kcal Electronic energy + Delta-G solvation = -18503.708411 eV Core-core repulsion = 15828.747374 eV Total energy + Delta-G solvation = -2674.961038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49723 -36.55039 -36.34819 -33.54979 -33.45701 -31.72674 -29.39617 -27.23051 -25.14819 -23.75026 -22.35686 -22.07568 -20.64423 -18.64835 -17.85443 -17.15289 -16.46173 -15.94277 -15.58803 -15.31589 -15.19505 -14.92621 -14.58262 -13.95584 -13.78202 -13.75446 -13.37636 -13.25979 -13.12532 -12.74123 -12.71706 -12.56072 -12.37480 -12.27644 -11.97783 -11.93599 -11.82595 -11.64846 -11.46085 -11.32961 -11.01102 -10.96493 -10.50308 -10.01095 -8.73861 -8.04020 -6.22872 1.08781 1.48720 1.52263 1.62221 2.14132 2.49306 3.22494 3.24813 3.76198 3.78459 4.00145 4.21559 4.27199 4.38536 4.46875 4.51358 4.55679 4.60487 4.67837 4.72048 4.83554 4.87325 4.98381 5.02394 5.05561 5.15820 5.20908 5.22669 5.23922 5.26505 5.35619 5.39478 5.47728 5.58379 5.62564 5.75973 5.91514 6.23379 6.88142 7.46249 9.00728 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.008174 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.283327 B = 3424.726529 C = 4357.432705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.223 4.223 4 H -0.001 1.001 5 C -0.503 4.503 6 H 0.094 0.906 7 C 0.017 3.983 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.245 1.245 11 H -0.284 1.284 12 H -0.295 1.295 13 S 1.227 4.773 14 O -0.923 6.923 15 C -0.382 4.382 16 H 0.136 0.864 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.110 4.110 20 C -0.085 4.085 21 H 0.084 0.916 22 C -0.143 4.143 23 C -0.089 4.089 24 H 0.056 0.944 25 H 0.018 0.982 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.258 0.742 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 8.518 10.926 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.343 4.343 4 H 0.017 0.983 5 C -0.542 4.542 6 H 0.111 0.889 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.167 1.167 11 H -0.211 1.211 12 H -0.222 1.222 13 S 1.434 4.566 14 O -0.919 6.919 15 C -0.501 4.501 16 H 0.154 0.846 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.105 4.105 21 H 0.102 0.898 22 C -0.201 4.201 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.686 8.072 11.534 14.332 hybrid contribution -0.268 0.741 -3.020 3.121 sum 2.418 8.813 8.514 12.490 Atomic orbital electron populations 1.21988 0.98057 1.00656 1.00650 1.21262 0.92437 0.97362 1.03062 1.24768 1.01930 1.00081 1.07527 0.98288 1.21030 0.88876 1.37928 1.06391 0.88856 1.25783 1.02311 0.94733 0.95432 1.70067 1.36791 1.39083 1.09998 0.85567 0.80402 0.77689 0.78494 1.16743 1.21052 1.22183 1.68861 0.88684 0.93506 1.05561 1.92863 1.29623 1.84733 1.84701 1.27299 1.10828 1.12831 0.99106 0.84562 1.21420 0.98179 0.98104 0.96797 1.21483 1.00717 0.94285 0.98433 1.21585 1.00450 0.98635 0.94071 1.21118 1.00696 0.93740 0.94912 0.89811 1.21810 1.01177 0.99924 0.97146 1.21342 0.99551 0.95967 0.95920 0.92503 0.96313 0.91971 0.90810 0.91541 0.93295 0.95230 0.93830 0.92607 0.91033 0.93487 0.90264 0.93517 0.91378 0.91547 0.88747 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.94 9.36 71.98 0.67 -6.26 16 2 C -0.10 -4.78 5.24 30.59 0.16 -4.62 16 3 C -0.22 -10.63 1.60 29.85 0.05 -10.59 16 4 H 0.00 -0.07 7.25 -2.39 -0.02 -0.09 16 5 C -0.50 -23.99 8.05 25.60 0.21 -23.79 16 6 H 0.09 3.89 6.68 -2.91 -0.02 3.87 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -51.46 11.29 21.45 0.24 -51.21 16 9 Si 0.95 39.69 29.54 68.60 2.03 41.72 16 10 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 13 S 1.23 47.44 11.76 -56.49 -0.66 46.77 16 14 O -0.92 -44.15 15.98 -148.98 -2.38 -46.53 16 15 C -0.38 -12.70 2.22 30.59 0.07 -12.63 16 16 H 0.14 4.18 7.05 -2.39 -0.02 4.16 16 17 C -0.11 -4.00 5.01 30.59 0.15 -3.85 16 18 C -0.11 -3.28 5.92 30.60 0.18 -3.09 16 19 C -0.11 -2.70 5.20 30.59 0.16 -2.54 16 20 C -0.09 -1.91 2.72 -10.80 -0.03 -1.94 16 21 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 22 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 23 C -0.09 -2.43 4.49 30.59 0.14 -2.30 16 24 H 0.06 2.51 6.04 -2.39 -0.01 2.49 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 28 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.91 6.73 -2.39 -0.02 1.89 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -65.30 316.20 3.07 -62.23 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.98 Total: 19.20 kcal Atomic # 6 Polarization: -75.04 SS G_CDS: 2.87 Total: -72.17 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.24 Total: -51.21 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -2.38 Total: -46.53 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 47.44 SS G_CDS: -0.66 Total: 46.77 kcal Total: -65.30 3.07 -62.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251345011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.772 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds