Wall clock time and date at job start Mon Mar 30 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09000 * 109.46578 * 304.95299 * 3 2 1 5 5 C 1.50702 * 109.46913 * 184.96012 * 3 2 1 6 6 H 1.08001 * 119.99590 * 239.99714 * 5 3 2 7 7 C 1.37870 * 120.00455 * 59.99581 * 5 3 2 8 8 N 1.31515 * 119.99832 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47226 * 60.00005 * 9 7 5 11 11 H 1.48502 * 109.47308 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47001 * 300.00088 * 9 7 5 13 13 S 1.81397 * 109.47232 * 64.95513 * 3 2 1 14 14 O 1.42093 * 109.47219 * 290.77861 * 13 3 2 15 15 C 1.81401 * 102.99737 * 174.39230 * 13 3 2 16 16 H 1.09002 * 109.47781 * 297.38803 * 15 13 3 17 17 C 1.52999 * 109.47186 * 57.39016 * 15 13 3 18 18 C 1.52998 * 109.47287 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47035 * 299.99983 * 18 17 15 20 20 C 1.52999 * 109.47070 * 59.99884 * 19 18 17 21 21 H 1.09004 * 109.47220 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47229 * 60.00332 * 20 19 18 23 23 C 1.52998 * 109.47287 * 299.99962 * 20 19 18 24 24 H 1.09004 * 109.46592 * 53.64254 * 1 2 3 25 25 H 1.09006 * 109.47345 * 173.64042 * 1 2 3 26 26 H 1.09000 * 109.47371 * 293.64190 * 1 2 3 27 27 H 1.09001 * 109.47208 * 239.99306 * 2 1 3 28 28 H 1.09008 * 109.46824 * 119.99954 * 2 1 3 29 29 H 0.97004 * 120.00079 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46993 * 299.99750 * 17 15 13 31 31 H 1.09007 * 109.47146 * 59.99978 * 17 15 13 32 32 H 1.08993 * 109.47513 * 59.99973 * 18 17 15 33 33 H 1.09001 * 109.47093 * 180.02562 * 18 17 15 34 34 H 1.08998 * 109.47435 * 299.99778 * 19 18 17 35 35 H 1.08998 * 109.47206 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46431 * 299.99762 * 22 20 19 37 37 H 1.09005 * 109.47109 * 59.99557 * 22 20 19 38 38 H 1.08996 * 109.47033 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.46827 * 299.99867 * 23 20 19 40 40 H 1.09001 * 109.47093 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9812 -0.8423 5 6 3.5420 1.4442 -0.1229 6 1 4.1467 1.8890 0.6536 7 6 4.1441 0.8780 -1.2263 8 7 3.4077 0.3359 -2.1715 9 14 6.0059 0.8795 -1.3782 10 1 6.5968 0.1450 -0.2307 11 1 6.3997 0.2147 -2.6464 12 1 6.5014 2.2794 -1.3779 13 16 1.5590 2.2540 1.5494 14 8 0.1509 2.4440 1.5673 15 6 2.3852 3.8651 1.4398 16 1 3.4649 3.7186 1.4081 17 6 1.9310 4.5858 0.1688 18 6 2.6274 5.9450 0.0767 19 6 2.2625 6.7889 1.2996 20 6 2.7167 6.0683 2.5705 21 1 2.4571 6.6698 3.4417 22 6 4.2322 5.8630 2.5264 23 6 2.0203 4.7091 2.6627 24 1 -0.3633 0.6093 -0.8277 25 1 -0.3634 -1.0214 -0.1138 26 1 -0.3634 0.4121 0.9414 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8313 -0.0622 -2.9481 30 1 2.1906 3.9843 -0.7024 31 1 0.8513 4.7325 0.2005 32 1 3.7070 5.7988 0.0452 33 1 2.3034 6.4586 -0.8285 34 1 1.1828 6.9353 1.3310 35 1 2.7589 7.7571 1.2341 36 1 4.4921 5.2617 1.6551 37 1 4.7283 6.8314 2.4607 38 1 4.5557 5.3492 3.4316 39 1 0.9407 4.8554 2.6941 40 1 2.3443 4.1955 3.5679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251345015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:56 Heat of formation + Delta-G solvation = -76.126679 kcal Electronic energy + Delta-G solvation = -18710.938470 eV Core-core repulsion = 16036.882561 eV Total energy + Delta-G solvation = -2674.055909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.58096 -34.69617 -34.50191 -31.68079 -31.55625 -30.46258 -27.53913 -26.45368 -23.27143 -22.38777 -21.81017 -20.27141 -18.27707 -16.86474 -16.37665 -15.60480 -15.08369 -14.43034 -14.17841 -13.79806 -13.54896 -13.41292 -13.10050 -12.66476 -12.23811 -12.06710 -11.91102 -11.68571 -11.48927 -11.24925 -11.19118 -10.95730 -10.83179 -10.73905 -10.65512 -10.58020 -10.15709 -10.02684 -9.87515 -9.80190 -9.61252 -9.16788 -8.57433 -8.28131 -6.99221 -6.11147 -4.24559 2.71284 3.23900 3.29725 3.30768 3.82175 4.32278 4.86189 4.98837 5.02565 5.14097 5.17650 5.52916 5.58146 5.64529 5.73583 5.83762 5.90196 6.02431 6.08716 6.09937 6.20956 6.22613 6.29495 6.32421 6.46405 6.49909 6.51177 6.55134 6.63001 6.75203 6.89531 6.90771 7.07061 7.09214 7.46378 7.68366 7.81110 8.15690 8.77392 9.40950 10.93139 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.009249 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.486347 B = 3026.596737 C = 4063.305535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.209 4.209 4 H 0.047 0.953 5 C -0.507 4.507 6 H 0.068 0.932 7 C 0.072 3.928 8 N -0.880 5.880 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.276 1.276 13 S 1.169 4.831 14 O -0.883 6.883 15 C -0.388 4.388 16 H 0.123 0.877 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.085 4.085 21 H 0.062 0.938 22 C -0.151 4.151 23 C -0.089 4.089 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 6.754 8.008 10.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.139 4.139 3 C -0.331 4.331 4 H 0.065 0.935 5 C -0.546 4.546 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.517 5.517 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.201 1.201 13 S 1.375 4.625 14 O -0.878 6.878 15 C -0.504 4.504 16 H 0.141 0.859 17 C -0.145 4.145 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.104 4.104 21 H 0.081 0.919 22 C -0.208 4.208 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.371 6.323 8.597 10.760 hybrid contribution 0.361 1.130 -2.210 2.508 sum 1.731 7.453 6.387 9.967 Atomic orbital electron populations 1.22084 0.98794 0.99613 1.01748 1.21312 0.91745 0.97450 1.03429 1.24632 1.01897 0.99674 1.06881 0.93508 1.20513 0.88389 1.39381 1.06294 0.91349 1.24941 0.98082 0.94712 0.95484 1.69876 1.35193 1.37367 1.09285 0.86656 0.85371 0.78448 0.77617 1.19764 1.21366 1.20104 1.69511 0.90621 0.92780 1.09542 1.92945 1.26769 1.83070 1.85047 1.27354 1.10667 1.14206 0.98182 0.85874 1.21490 0.99245 0.96269 0.97484 1.21519 1.00993 0.95963 0.96824 1.21543 1.00442 0.97850 0.95150 1.21032 0.95788 0.96316 0.97306 0.91932 1.21950 0.95183 1.01203 1.02513 1.21234 1.00067 0.94919 0.96528 0.93893 0.94447 0.92543 0.87898 0.93808 0.92722 0.90414 0.92897 0.91513 0.92959 0.92610 0.92739 0.91316 0.93485 0.92780 0.92164 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.36 37.16 0.35 -3.24 16 2 C -0.10 -2.29 5.24 -26.73 -0.14 -2.43 16 3 C -0.21 -4.85 1.60 -27.88 -0.04 -4.89 16 4 H 0.05 1.24 7.25 -51.92 -0.38 0.86 16 5 C -0.51 -12.07 8.05 -34.44 -0.28 -12.35 16 6 H 0.07 1.49 6.68 -52.49 -0.35 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.68 11.29 55.43 0.63 -23.06 16 9 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 S 1.17 22.78 11.76 -107.50 -1.26 21.51 16 14 O -0.88 -20.88 15.98 -35.23 -0.56 -21.45 16 15 C -0.39 -6.66 1.95 -26.73 -0.05 -6.72 16 16 H 0.12 2.05 5.34 -51.92 -0.28 1.78 16 17 C -0.11 -1.97 5.01 -26.73 -0.13 -2.11 16 18 C -0.11 -1.77 5.65 -26.73 -0.15 -1.92 16 19 C -0.11 -1.53 5.45 -26.73 -0.15 -1.67 16 20 C -0.08 -1.11 3.19 -90.62 -0.29 -1.40 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -1.85 8.50 37.16 0.32 -1.54 16 23 C -0.09 -1.33 4.74 -26.73 -0.13 -1.45 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.23 6.04 -51.93 -0.31 0.92 16 27 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 28 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.93 4.81 -51.93 -0.25 0.68 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -29.10 309.16 -9.12 -38.22 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.77 Total: 3.64 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: -0.79 Total: -37.99 kcal Atomic # 7 Polarization: -23.68 SS G_CDS: 0.63 Total: -23.06 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.56 Total: -21.45 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 22.78 SS G_CDS: -1.26 Total: 21.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.10 -9.12 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251345015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.909 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds