Wall clock time and date at job start Mon Mar 30 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09000 * 109.46578 * 304.95299 * 3 2 1 5 5 C 1.50702 * 109.46913 * 184.96012 * 3 2 1 6 6 H 1.08001 * 119.99590 * 239.99714 * 5 3 2 7 7 C 1.37870 * 120.00455 * 59.99581 * 5 3 2 8 8 N 1.31515 * 119.99832 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00185 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47226 * 60.00005 * 9 7 5 11 11 H 1.48502 * 109.47308 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47001 * 300.00088 * 9 7 5 13 13 S 1.81397 * 109.47232 * 64.95513 * 3 2 1 14 14 O 1.42093 * 109.47219 * 290.77861 * 13 3 2 15 15 C 1.81401 * 102.99737 * 174.39230 * 13 3 2 16 16 H 1.09002 * 109.47781 * 297.38803 * 15 13 3 17 17 C 1.52999 * 109.47186 * 57.39016 * 15 13 3 18 18 C 1.52998 * 109.47287 * 179.97438 * 17 15 13 19 19 C 1.53000 * 109.47035 * 299.99983 * 18 17 15 20 20 C 1.52999 * 109.47070 * 59.99884 * 19 18 17 21 21 H 1.09004 * 109.47220 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47229 * 60.00332 * 20 19 18 23 23 C 1.52998 * 109.47287 * 299.99962 * 20 19 18 24 24 H 1.09004 * 109.46592 * 53.64254 * 1 2 3 25 25 H 1.09006 * 109.47345 * 173.64042 * 1 2 3 26 26 H 1.09000 * 109.47371 * 293.64190 * 1 2 3 27 27 H 1.09001 * 109.47208 * 239.99306 * 2 1 3 28 28 H 1.09008 * 109.46824 * 119.99954 * 2 1 3 29 29 H 0.97004 * 120.00079 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46993 * 299.99750 * 17 15 13 31 31 H 1.09007 * 109.47146 * 59.99978 * 17 15 13 32 32 H 1.08993 * 109.47513 * 59.99973 * 18 17 15 33 33 H 1.09001 * 109.47093 * 180.02562 * 18 17 15 34 34 H 1.08998 * 109.47435 * 299.99778 * 19 18 17 35 35 H 1.08998 * 109.47206 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46431 * 299.99762 * 22 20 19 37 37 H 1.09005 * 109.47109 * 59.99557 * 22 20 19 38 38 H 1.08996 * 109.47033 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.46827 * 299.99867 * 23 20 19 40 40 H 1.09001 * 109.47093 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9812 -0.8423 5 6 3.5420 1.4442 -0.1229 6 1 4.1467 1.8890 0.6536 7 6 4.1441 0.8780 -1.2263 8 7 3.4077 0.3359 -2.1715 9 14 6.0059 0.8795 -1.3782 10 1 6.5968 0.1450 -0.2307 11 1 6.3997 0.2147 -2.6464 12 1 6.5014 2.2794 -1.3779 13 16 1.5590 2.2540 1.5494 14 8 0.1509 2.4440 1.5673 15 6 2.3852 3.8651 1.4398 16 1 3.4649 3.7186 1.4081 17 6 1.9310 4.5858 0.1688 18 6 2.6274 5.9450 0.0767 19 6 2.2625 6.7889 1.2996 20 6 2.7167 6.0683 2.5705 21 1 2.4571 6.6698 3.4417 22 6 4.2322 5.8630 2.5264 23 6 2.0203 4.7091 2.6627 24 1 -0.3633 0.6093 -0.8277 25 1 -0.3634 -1.0214 -0.1138 26 1 -0.3634 0.4121 0.9414 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8313 -0.0622 -2.9481 30 1 2.1906 3.9843 -0.7024 31 1 0.8513 4.7325 0.2005 32 1 3.7070 5.7988 0.0452 33 1 2.3034 6.4586 -0.8285 34 1 1.1828 6.9353 1.3310 35 1 2.7589 7.7571 1.2341 36 1 4.4921 5.2617 1.6551 37 1 4.7283 6.8314 2.4607 38 1 4.5557 5.3492 3.4316 39 1 0.9407 4.8554 2.6941 40 1 2.3443 4.1955 3.5679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251345015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:55 Heat of formation + Delta-G solvation = -92.534387 kcal Electronic energy + Delta-G solvation = -18711.649962 eV Core-core repulsion = 16036.882561 eV Total energy + Delta-G solvation = -2674.767401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79678 -36.54219 -36.34161 -33.47814 -32.90528 -31.73653 -29.36995 -27.54001 -25.15620 -23.69864 -23.14184 -22.06806 -19.48214 -18.63458 -18.01972 -17.26893 -16.63042 -16.00974 -15.45673 -15.39203 -14.97380 -14.83403 -14.68111 -14.06799 -13.77992 -13.63747 -13.50390 -13.28865 -13.11086 -12.72051 -12.58926 -12.50477 -12.46541 -12.30004 -11.97264 -11.89645 -11.84422 -11.63697 -11.46432 -11.13530 -10.99677 -10.87057 -10.47025 -10.00624 -8.72908 -8.02890 -6.21839 1.10037 1.52338 1.53003 1.59022 2.15067 2.50108 3.23385 3.25613 3.77240 3.78717 4.01697 4.28636 4.33193 4.38908 4.44442 4.48420 4.51706 4.63712 4.68287 4.71841 4.86032 4.94747 4.99100 5.06595 5.09719 5.12277 5.21073 5.23354 5.25073 5.28538 5.38557 5.44406 5.50105 5.58796 5.70335 5.76440 5.92087 6.24032 6.88386 7.47137 9.01345 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.009249 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.486347 B = 3026.596737 C = 4063.305535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C -0.221 4.221 4 H -0.001 1.001 5 C -0.504 4.504 6 H 0.092 0.908 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.256 1.256 11 H -0.299 1.299 12 H -0.268 1.268 13 S 1.224 4.776 14 O -0.924 6.924 15 C -0.380 4.380 16 H 0.138 0.862 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.082 4.082 21 H 0.086 0.914 22 C -0.151 4.151 23 C -0.091 4.091 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.258 0.742 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 8.130 10.478 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.341 4.341 4 H 0.017 0.983 5 C -0.543 4.543 6 H 0.110 0.890 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.180 1.180 11 H -0.226 1.226 12 H -0.193 1.193 13 S 1.431 4.569 14 O -0.920 6.920 15 C -0.499 4.499 16 H 0.156 0.844 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.101 4.101 21 H 0.105 0.895 22 C -0.208 4.208 23 C -0.129 4.129 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.289 7.676 11.075 13.871 hybrid contribution -0.279 0.785 -2.976 3.090 sum 3.010 8.461 8.099 12.093 Atomic orbital electron populations 1.21990 0.98089 1.00639 1.00637 1.21266 0.92406 0.97398 1.03047 1.24746 1.01884 1.00034 1.07479 0.98303 1.20935 0.88857 1.38102 1.06413 0.88989 1.25771 1.02269 0.94708 0.95424 1.70060 1.36885 1.38955 1.09944 0.85686 0.80392 0.78705 0.77448 1.17995 1.22589 1.19282 1.68845 0.88717 0.93684 1.05647 1.92861 1.29614 1.84785 1.84718 1.27300 1.10873 1.12675 0.99058 0.84422 1.21405 0.98148 0.98053 0.96773 1.21509 1.00905 0.94294 0.98312 1.21562 1.00312 0.98617 0.94389 1.21055 0.96304 0.94981 0.97763 0.89525 1.21948 0.94272 1.02062 1.02543 1.21329 0.99387 0.96190 0.96041 0.96315 0.91985 0.92526 0.90778 0.91597 0.93317 0.93928 0.95249 0.90809 0.92835 0.93390 0.90318 0.92906 0.91949 0.91231 0.93953 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.94 9.36 71.98 0.67 -6.27 16 2 C -0.10 -4.77 5.24 30.59 0.16 -4.61 16 3 C -0.22 -10.54 1.60 29.85 0.05 -10.49 16 4 H 0.00 -0.08 7.25 -2.39 -0.02 -0.09 16 5 C -0.50 -23.98 8.05 25.60 0.21 -23.78 16 6 H 0.09 3.82 6.68 -2.91 -0.02 3.80 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.92 -51.30 11.29 21.44 0.24 -51.06 16 9 Si 0.95 39.57 29.54 68.60 2.03 41.60 16 10 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 11 H -0.30 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 13 S 1.22 47.33 11.76 -56.49 -0.66 46.67 16 14 O -0.92 -44.19 15.98 -148.98 -2.38 -46.57 16 15 C -0.38 -12.61 1.95 30.59 0.06 -12.55 16 16 H 0.14 4.25 5.34 -2.39 -0.01 4.24 16 17 C -0.11 -3.96 5.01 30.59 0.15 -3.80 16 18 C -0.11 -3.32 5.65 30.59 0.17 -3.15 16 19 C -0.11 -2.72 5.45 30.59 0.17 -2.56 16 20 C -0.08 -1.81 3.19 -10.79 -0.03 -1.85 16 21 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 22 C -0.15 -3.02 8.50 71.98 0.61 -2.41 16 23 C -0.09 -2.46 4.74 30.59 0.14 -2.32 16 24 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 26 H 0.06 2.50 6.04 -2.39 -0.01 2.49 16 27 H 0.07 3.93 5.95 -2.39 -0.01 3.92 16 28 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 29 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.04 1.87 6.73 -2.39 -0.02 1.85 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 2.10 6.43 -2.39 -0.02 2.09 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.23 4.81 -2.38 -0.01 1.22 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.97 309.16 3.03 -61.94 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.00 Total: 19.83 kcal Atomic # 6 Polarization: -75.22 SS G_CDS: 2.81 Total: -72.41 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.24 Total: -51.06 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.38 Total: -46.57 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.66 Total: 46.67 kcal Total: -64.97 3.03 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251345015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.599 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds