Wall clock time and date at job start Mon Mar 30 2020 07:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47306 * 239.99692 * 2 1 3 5 5 C 1.47202 * 109.47252 * 174.99985 * 4 2 1 6 6 N 3.43557 * 154.82763 * 248.42704 * 2 1 3 7 7 N 1.46903 * 109.47215 * 119.99462 * 2 1 3 8 8 C 1.46899 * 110.99734 * 58.95643 * 7 2 1 9 9 C 1.46897 * 110.99868 * 295.00452 * 7 2 1 10 10 H 1.08999 * 109.47837 * 59.99755 * 9 7 2 11 11 C 1.50704 * 109.46940 * 299.99248 * 9 7 2 12 12 H 1.07999 * 120.00208 * 325.04421 * 11 9 7 13 13 C 1.37874 * 119.99600 * 145.31692 * 11 9 7 14 14 N 1.31515 * 120.00272 * 184.68962 * 13 11 9 15 15 Si 1.86803 * 120.00170 * 4.69302 * 13 11 9 16 16 H 1.48495 * 109.47408 * 84.58168 * 15 13 11 17 17 H 1.48505 * 109.47079 * 204.58279 * 15 13 11 18 18 H 1.48500 * 109.47088 * 324.57938 * 15 13 11 19 19 C 1.50706 * 109.46943 * 179.97438 * 9 7 2 20 20 C 1.38237 * 120.00374 * 45.43352 * 19 9 7 21 21 C 1.38235 * 120.00153 * 179.78954 * 20 19 9 22 22 C 1.38236 * 119.99678 * 0.43939 * 21 20 19 23 23 C 1.38227 * 120.00326 * 359.81566 * 22 21 20 24 24 C 1.38234 * 120.00045 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47459 * 60.00386 * 1 2 3 26 26 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47607 * 300.00723 * 1 2 3 28 28 H 1.09000 * 109.47055 * 294.99586 * 4 2 1 29 29 H 1.08996 * 109.47668 * 55.00341 * 4 2 1 30 30 H 1.09009 * 109.47155 * 296.04251 * 8 7 2 31 31 H 1.09000 * 109.47400 * 56.04383 * 8 7 2 32 32 H 1.09001 * 109.47416 * 176.04632 * 8 7 2 33 33 H 0.97001 * 120.00328 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.99632 * 0.02562 * 20 19 9 35 35 H 1.07997 * 120.00040 * 180.27335 * 21 20 19 36 36 H 1.08001 * 119.99524 * 179.83177 * 22 21 20 37 37 H 1.08002 * 120.00437 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.00217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5070 -0.6174 -1.3112 6 7 4.6392 -0.5373 -1.3589 7 7 2.0196 -0.6924 1.1995 8 6 1.5283 -2.0760 1.2461 9 6 1.6486 0.0393 2.4180 10 1 0.5631 0.1178 2.4785 11 6 2.2507 1.4203 2.3777 12 1 3.2197 1.5739 1.9262 13 6 1.5669 2.4865 2.9222 14 7 2.0483 3.7049 2.8059 15 14 -0.0432 2.2007 3.8251 16 1 0.2389 1.8332 5.2360 17 1 -0.8574 3.4422 3.7903 18 1 -0.7912 1.0996 3.1668 19 6 2.1662 -0.6998 3.6251 20 6 3.4597 -1.1875 3.6347 21 6 3.9359 -1.8617 4.7436 22 6 3.1157 -2.0560 5.8393 23 6 1.8206 -1.5730 5.8276 24 6 1.3458 -0.8950 4.7204 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7716 -1.2054 29 1 1.6054 -0.2619 -2.1370 30 1 0.4418 -2.0730 1.3349 31 1 1.8166 -2.5950 0.3320 32 1 1.9616 -2.5868 2.1060 33 1 1.5674 4.4550 3.1893 34 1 4.0994 -1.0385 2.7774 35 1 4.9478 -2.2389 4.7529 36 1 3.4869 -2.5851 6.7045 37 1 1.1797 -1.7252 6.6834 38 1 0.3338 -0.5179 4.7111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251698906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:13 Heat of formation + Delta-G solvation = 61.624079 kcal Electronic energy + Delta-G solvation = -19649.860414 eV Core-core repulsion = 16878.626626 eV Total energy + Delta-G solvation = -2771.233788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.16179 -37.67200 -35.73985 -33.23996 -31.91553 -30.27000 -29.73116 -28.13336 -27.31646 -24.64641 -22.91734 -21.89338 -20.55158 -18.92864 -17.18956 -16.89289 -16.15782 -15.95517 -14.83067 -14.47533 -14.19649 -13.73210 -13.65449 -13.20451 -13.04492 -12.86167 -12.75578 -12.51829 -12.22034 -12.09708 -11.71463 -11.51034 -11.45996 -11.11865 -10.95094 -10.82615 -10.69630 -10.45334 -10.08412 -9.98704 -9.92953 -9.50353 -8.72543 -8.22418 -7.83696 -7.39954 -6.21799 -4.20687 2.08050 2.14204 3.15071 3.22229 3.26881 3.31288 3.33884 4.26088 4.42321 4.52479 4.75590 5.10295 5.32750 5.50527 5.52301 5.55978 5.67335 5.69132 5.72843 5.81628 5.93980 5.96906 6.04625 6.13385 6.22707 6.27919 6.41363 6.49569 6.63779 6.68860 6.84259 6.85376 7.12730 7.19384 7.36737 7.46664 7.75174 7.85344 7.97514 8.13679 8.49844 8.90328 9.39392 10.90049 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.010295 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.590011 B = 2719.228847 C = 3695.272863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.092 3.908 3 H 0.112 0.888 4 C -0.024 4.024 5 C 0.227 3.773 6 N -0.451 5.451 7 N -0.524 5.524 8 C 0.012 3.988 9 C 0.207 3.793 10 H 0.028 0.972 11 C -0.494 4.494 12 H 0.084 0.916 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.860 3.140 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.262 1.262 19 C -0.033 4.033 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.148 4.148 23 C -0.124 4.124 24 C -0.140 4.140 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.021 0.979 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -10.646 -2.214 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.018 4.018 3 H 0.130 0.870 4 C -0.064 4.064 5 C -0.091 4.091 6 N -0.128 5.128 7 N -0.247 5.247 8 C -0.137 4.137 9 C 0.101 3.899 10 H 0.045 0.955 11 C -0.531 4.531 12 H 0.102 0.898 13 C -0.124 4.124 14 N -0.523 5.523 15 Si 0.688 3.312 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.188 1.188 19 C -0.034 4.034 20 C -0.111 4.111 21 C -0.146 4.146 22 C -0.166 4.166 23 C -0.142 4.142 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.258 -10.325 -2.275 11.063 hybrid contribution -2.203 0.076 0.930 2.393 sum -5.461 -10.248 -1.345 11.690 Atomic orbital electron populations 1.22417 0.97466 1.01425 1.02867 1.21540 0.92356 1.00309 0.87629 0.86999 1.19529 0.82634 1.03605 1.00668 1.28853 0.95027 0.92980 0.92212 1.81118 1.13134 1.08902 1.09646 1.62244 1.59010 1.00807 1.02643 1.22500 0.97551 0.92023 1.01611 1.18933 0.94829 0.92672 0.83485 0.95453 1.20791 1.06425 0.87773 1.38160 0.89759 1.24955 0.97176 0.94999 0.95289 1.69875 1.39517 0.98645 1.44291 0.87200 0.84645 0.77639 0.81712 1.19382 1.21466 1.18751 1.20478 0.93918 0.92276 0.96767 1.20967 0.95584 0.96757 0.97767 1.21090 0.98973 1.00391 0.94186 1.20853 0.94573 1.02776 0.98409 1.20900 0.95965 0.99579 0.97757 1.20967 0.99515 1.00806 0.94601 0.92360 0.92924 0.91452 0.88116 0.87673 0.96080 0.92416 0.91728 0.92355 0.85806 0.87218 0.87402 0.87363 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.50 37.15 0.32 -2.30 16 2 C 0.09 1.47 2.12 -67.72 -0.14 1.33 16 3 H 0.11 2.18 6.91 -51.93 -0.36 1.83 16 4 C -0.02 -0.29 5.00 -29.52 -0.15 -0.44 16 5 C 0.23 3.67 15.15 -20.76 -0.31 3.36 16 6 N -0.45 -8.65 18.54 42.16 0.78 -7.87 16 7 N -0.52 -9.52 3.81 -229.69 -0.88 -10.39 16 8 C 0.01 0.18 8.37 60.06 0.50 0.68 16 9 C 0.21 4.43 1.04 -70.01 -0.07 4.36 16 10 H 0.03 0.61 3.25 -51.93 -0.17 0.44 16 11 C -0.49 -12.73 7.49 -34.44 -0.26 -12.99 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 15 Si 0.86 20.11 25.08 -169.99 -4.26 15.85 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.26 -5.68 6.03 56.52 0.34 -5.33 16 19 C -0.03 -0.69 3.52 -104.62 -0.37 -1.06 16 20 C -0.09 -1.84 8.37 -39.58 -0.33 -2.17 16 21 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 22 C -0.15 -2.45 10.05 -39.59 -0.40 -2.85 16 23 C -0.12 -2.17 10.05 -39.59 -0.40 -2.56 16 24 C -0.14 -2.78 8.82 -39.58 -0.35 -3.13 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.05 0.65 6.47 -51.93 -0.34 0.32 16 27 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 28 H 0.10 1.01 6.09 -51.93 -0.32 0.69 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.02 0.31 6.51 -51.92 -0.34 -0.03 16 31 H 0.06 0.73 6.03 -51.93 -0.31 0.42 16 32 H 0.06 1.04 6.36 -51.93 -0.33 0.71 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.12 2.57 7.89 -52.48 -0.41 2.16 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 2.06 6.34 -52.49 -0.33 1.72 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -29.95 304.77 -6.42 -36.38 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.98 Total: 4.74 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.46 Total: -18.38 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.68 Total: -43.18 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.26 Total: 15.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.95 -6.42 -36.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251698906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.003 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds