Wall clock time and date at job start Mon Mar 30 2020 07:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47306 * 239.99692 * 2 1 3 5 5 C 1.47202 * 109.47252 * 174.99985 * 4 2 1 6 6 N 3.43557 * 154.82763 * 248.42704 * 2 1 3 7 7 N 1.46903 * 109.47215 * 119.99462 * 2 1 3 8 8 C 1.46899 * 110.99734 * 58.95643 * 7 2 1 9 9 C 1.46897 * 110.99868 * 295.00452 * 7 2 1 10 10 H 1.08999 * 109.47837 * 59.99755 * 9 7 2 11 11 C 1.50704 * 109.46940 * 299.99248 * 9 7 2 12 12 H 1.07999 * 120.00208 * 325.04421 * 11 9 7 13 13 C 1.37874 * 119.99600 * 145.31692 * 11 9 7 14 14 N 1.31515 * 120.00272 * 184.68962 * 13 11 9 15 15 Si 1.86803 * 120.00170 * 4.69302 * 13 11 9 16 16 H 1.48495 * 109.47408 * 84.58168 * 15 13 11 17 17 H 1.48505 * 109.47079 * 204.58279 * 15 13 11 18 18 H 1.48500 * 109.47088 * 324.57938 * 15 13 11 19 19 C 1.50706 * 109.46943 * 179.97438 * 9 7 2 20 20 C 1.38237 * 120.00374 * 45.43352 * 19 9 7 21 21 C 1.38235 * 120.00153 * 179.78954 * 20 19 9 22 22 C 1.38236 * 119.99678 * 0.43939 * 21 20 19 23 23 C 1.38227 * 120.00326 * 359.81566 * 22 21 20 24 24 C 1.38234 * 120.00045 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47459 * 60.00386 * 1 2 3 26 26 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47607 * 300.00723 * 1 2 3 28 28 H 1.09000 * 109.47055 * 294.99586 * 4 2 1 29 29 H 1.08996 * 109.47668 * 55.00341 * 4 2 1 30 30 H 1.09009 * 109.47155 * 296.04251 * 8 7 2 31 31 H 1.09000 * 109.47400 * 56.04383 * 8 7 2 32 32 H 1.09001 * 109.47416 * 176.04632 * 8 7 2 33 33 H 0.97001 * 120.00328 * 180.02562 * 14 13 11 34 34 H 1.08003 * 119.99632 * 0.02562 * 20 19 9 35 35 H 1.07997 * 120.00040 * 180.27335 * 21 20 19 36 36 H 1.08001 * 119.99524 * 179.83177 * 22 21 20 37 37 H 1.08002 * 120.00437 * 179.97438 * 23 22 21 38 38 H 1.08002 * 120.00217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5070 -0.6174 -1.3112 6 7 4.6392 -0.5373 -1.3589 7 7 2.0196 -0.6924 1.1995 8 6 1.5283 -2.0760 1.2461 9 6 1.6486 0.0393 2.4180 10 1 0.5631 0.1178 2.4785 11 6 2.2507 1.4203 2.3777 12 1 3.2197 1.5739 1.9262 13 6 1.5669 2.4865 2.9222 14 7 2.0483 3.7049 2.8059 15 14 -0.0432 2.2007 3.8251 16 1 0.2389 1.8332 5.2360 17 1 -0.8574 3.4422 3.7903 18 1 -0.7912 1.0996 3.1668 19 6 2.1662 -0.6998 3.6251 20 6 3.4597 -1.1875 3.6347 21 6 3.9359 -1.8617 4.7436 22 6 3.1157 -2.0560 5.8393 23 6 1.8206 -1.5730 5.8276 24 6 1.3458 -0.8950 4.7204 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7716 -1.2054 29 1 1.6054 -0.2619 -2.1370 30 1 0.4418 -2.0730 1.3349 31 1 1.8166 -2.5950 0.3320 32 1 1.9616 -2.5868 2.1060 33 1 1.5674 4.4550 3.1893 34 1 4.0994 -1.0385 2.7774 35 1 4.9478 -2.2389 4.7529 36 1 3.4869 -2.5851 6.7045 37 1 1.1797 -1.7252 6.6834 38 1 0.3338 -0.5179 4.7111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251698906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:10 Heat of formation + Delta-G solvation = 42.527786 kcal Electronic energy + Delta-G solvation = -19650.688492 eV Core-core repulsion = 16878.626626 eV Total energy + Delta-G solvation = -2772.061866 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.60641 -39.01519 -37.14718 -34.99381 -33.57269 -31.69862 -31.08808 -29.58367 -28.68212 -26.09171 -24.56437 -23.33231 -21.95158 -20.42382 -18.95678 -18.30006 -17.58224 -17.32844 -16.34511 -16.10115 -15.62605 -15.10120 -14.97343 -14.74688 -14.51905 -14.37451 -14.23514 -14.04629 -13.60491 -13.49309 -13.06807 -12.88425 -12.77090 -12.72998 -12.40819 -12.11313 -12.05885 -11.95748 -11.81230 -11.52819 -11.34364 -11.29047 -10.73817 -9.66574 -9.33517 -8.80725 -8.29598 -6.31257 0.63089 0.70592 1.27501 1.33007 1.38586 2.01205 2.05939 2.29803 2.94076 3.16709 3.27282 3.45111 4.14234 4.14460 4.23975 4.32934 4.38799 4.45283 4.54436 4.58496 4.70098 4.80989 4.84333 4.85547 4.93258 5.00549 5.03070 5.22690 5.25781 5.30212 5.43976 5.52543 5.54677 5.71830 5.76901 5.98016 6.09934 6.29154 6.51127 6.73480 6.80184 6.86889 7.33265 8.86852 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.010295 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.590011 B = 2719.228847 C = 3695.272863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.063 0.937 4 C -0.015 4.015 5 C 0.245 3.755 6 N -0.514 5.514 7 N -0.541 5.541 8 C 0.015 3.985 9 C 0.218 3.782 10 H 0.026 0.974 11 C -0.480 4.480 12 H 0.028 0.972 13 C 0.023 3.977 14 N -0.943 5.943 15 Si 0.918 3.082 16 H -0.266 1.266 17 H -0.292 1.292 18 H -0.233 1.233 19 C -0.055 4.055 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.139 4.139 23 C -0.122 4.122 24 C -0.158 4.158 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -13.731 -1.602 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 H 0.081 0.919 4 C -0.055 4.055 5 C -0.071 4.071 6 N -0.192 5.192 7 N -0.265 5.265 8 C -0.133 4.133 9 C 0.111 3.889 10 H 0.043 0.957 11 C -0.518 4.518 12 H 0.047 0.953 13 C -0.175 4.175 14 N -0.583 5.583 15 Si 0.743 3.257 16 H -0.191 1.191 17 H -0.218 1.218 18 H -0.157 1.157 19 C -0.056 4.056 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.140 4.140 24 C -0.177 4.177 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.156 0.844 29 H 0.166 0.834 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.393 -13.449 -1.679 14.587 hybrid contribution -1.432 0.958 0.732 1.872 sum -6.826 -12.491 -0.947 14.265 Atomic orbital electron populations 1.22338 0.95435 1.03121 1.02535 1.21488 0.93973 0.98228 0.88496 0.91857 1.19807 0.79764 1.05705 1.00175 1.29678 0.95873 0.91118 0.90411 1.81129 1.15309 1.11104 1.11694 1.62102 1.60086 1.02240 1.02064 1.22531 0.98155 0.89863 1.02736 1.18644 0.94020 0.90676 0.85587 0.95709 1.20840 1.03963 0.90667 1.36319 0.95341 1.25708 1.00877 0.94513 0.96403 1.70044 1.41690 0.99768 1.46835 0.86259 0.80754 0.78157 0.80492 1.19142 1.21832 1.15723 1.20420 0.94611 0.93786 0.96828 1.20887 0.95305 0.98345 0.98348 1.21392 1.00331 0.99355 0.93599 1.21291 0.93917 1.01550 0.98897 1.21302 0.96797 0.98129 0.97789 1.21131 0.99615 1.01786 0.95127 0.89705 0.90074 0.94815 0.84406 0.83387 0.94806 0.89363 0.92909 0.92623 0.88101 0.84872 0.83569 0.84148 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.58 8.50 71.98 0.61 -3.97 16 2 C 0.09 2.77 2.12 44.91 0.10 2.86 16 3 H 0.06 2.60 6.91 -2.39 -0.02 2.58 16 4 C -0.01 -0.32 5.00 28.79 0.14 -0.18 16 5 C 0.25 7.84 15.15 89.44 1.35 9.19 16 6 N -0.51 -20.25 18.54 20.01 0.37 -19.88 16 7 N -0.54 -19.55 3.81 -880.61 -3.36 -22.91 16 8 C 0.01 0.41 8.37 127.69 1.07 1.48 16 9 C 0.22 9.45 1.04 43.43 0.05 9.50 16 10 H 0.03 1.10 3.25 -2.39 -0.01 1.09 16 11 C -0.48 -26.17 7.49 25.60 0.19 -25.98 16 12 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 13 C 0.02 1.31 5.47 84.65 0.46 1.77 16 14 N -0.94 -57.91 13.96 21.45 0.30 -57.62 16 15 Si 0.92 42.19 25.08 68.60 1.72 43.91 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.23 -9.52 6.03 99.48 0.60 -8.92 16 19 C -0.06 -2.30 3.52 -19.86 -0.07 -2.37 16 20 C -0.11 -4.41 8.37 22.27 0.19 -4.22 16 21 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 22 C -0.14 -4.07 10.05 22.27 0.22 -3.85 16 23 C -0.12 -3.85 10.05 22.27 0.22 -3.62 16 24 C -0.16 -5.97 8.82 22.27 0.20 -5.78 16 25 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.08 1.66 6.47 -2.39 -0.02 1.64 16 27 H 0.03 1.11 6.48 -2.39 -0.02 1.09 16 28 H 0.14 2.06 6.09 -2.39 -0.01 2.05 16 29 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.03 0.86 6.51 -2.38 -0.02 0.85 16 31 H 0.09 1.89 6.03 -2.39 -0.01 1.88 16 32 H 0.05 1.61 6.36 -2.39 -0.02 1.60 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.10 4.40 7.89 -2.91 -0.02 4.38 16 35 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.10 3.89 6.34 -2.91 -0.02 3.87 16 Total: -1.00 -72.18 304.77 4.95 -67.23 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.95 Total: 18.46 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.96 Total: -29.19 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -2.69 Total: -100.40 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.72 Total: 43.91 kcal Total: -72.18 4.95 -67.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251698906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.761 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds