Wall clock time and date at job start Mon Mar 30 2020 08:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47801 * 270.00270 * 3 2 1 5 5 H 1.48508 * 109.47174 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.47128 * 149.99859 * 3 2 1 7 7 C 1.38809 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99733 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.97788 * 270.01801 * 12 11 10 14 14 C 1.38212 * 120.03625 * 180.02562 * 13 12 11 15 15 C 1.38344 * 119.99792 * 359.95605 * 14 13 12 16 16 Cl 1.73605 * 120.01708 * 180.29711 * 15 14 13 17 17 C 1.38445 * 119.96254 * 0.02562 * 15 14 13 18 18 Cl 1.73601 * 120.01534 * 180.02562 * 17 15 14 19 19 C 1.38196 * 119.98121 * 90.00245 * 12 11 10 20 20 H 0.97002 * 120.00128 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99991 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47616 * 60.00034 * 10 9 7 23 23 H 1.09002 * 109.47080 * 299.99721 * 10 9 7 24 24 H 1.09008 * 109.47245 * 59.99933 * 11 10 9 25 25 H 1.09002 * 109.47014 * 299.99840 * 11 10 9 26 26 H 1.07999 * 119.98547 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.99868 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.00416 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8173 -6.1248 -0.0016 13 6 2.1639 -6.7230 -1.1990 14 6 2.8545 -7.9202 -1.1998 15 6 3.2001 -8.5202 -0.0021 16 17 4.0743 -10.0201 -0.0026 17 6 2.8533 -7.9210 1.1968 18 17 3.2869 -8.6723 2.7005 19 6 2.1617 -6.7228 1.1957 20 1 -0.4850 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0023 22 1 2.6840 -3.7150 0.8888 23 1 2.6854 -3.7141 -0.8912 24 1 0.4374 -4.7618 -0.8925 25 1 0.4368 -4.7622 0.8875 26 1 1.8949 -6.2545 -2.1342 27 1 3.1254 -8.3867 -2.1355 28 1 1.8905 -6.2551 2.1307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258669550.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:05 Heat of formation + Delta-G solvation = 9.191478 kcal Electronic energy + Delta-G solvation = -14067.500721 eV Core-core repulsion = 11362.884748 eV Total energy + Delta-G solvation = -2704.615973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67490 -36.84868 -36.64087 -35.17036 -32.78986 -31.04319 -30.61996 -27.61516 -24.10921 -23.07632 -22.10139 -20.84486 -17.52347 -16.97152 -16.14851 -15.68122 -14.79463 -14.18673 -14.14861 -13.84654 -13.60169 -13.38930 -12.98197 -12.02837 -12.01514 -11.78094 -11.73423 -11.13814 -11.06721 -10.98453 -10.92220 -10.72920 -10.70322 -10.09919 -9.75522 -9.06163 -8.90371 -8.64006 -6.96979 -5.79697 -3.09109 0.85611 0.99735 1.71292 2.08552 3.34781 3.42282 3.47624 3.49275 4.49554 4.54105 4.73426 5.00027 5.08955 5.17768 5.45768 5.55368 5.70533 5.76578 5.84647 5.92231 6.09810 6.24037 6.34278 6.54297 6.73797 6.79936 7.67572 8.38956 9.50260 10.06400 10.41219 11.43094 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.003736 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.479866 B = 7491.856896 C = 7727.564795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.160 3.840 11 C -0.094 4.094 12 C -0.045 4.045 13 C -0.100 4.100 14 C -0.097 4.097 15 C -0.042 4.042 16 Cl -0.060 7.060 17 C -0.028 4.028 18 Cl -0.056 7.056 19 C -0.097 4.097 20 H 0.256 0.744 21 H 0.384 0.616 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -19.669 0.005 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.132 4.132 12 C -0.046 4.046 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.070 4.070 16 Cl -0.031 7.031 17 C -0.055 4.055 18 Cl -0.027 7.027 19 C -0.116 4.116 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.112 -19.745 0.156 20.397 hybrid contribution 0.304 0.712 0.137 0.786 sum 5.416 -19.034 0.293 19.791 Atomic orbital electron populations 1.69659 1.05120 1.25734 1.57681 1.24756 0.95563 0.97764 1.02911 0.86171 0.78668 0.83695 0.77549 1.21671 1.21711 1.20719 1.19223 0.91071 0.84062 1.42834 0.91135 1.42355 1.05902 0.99924 1.89646 1.20600 0.93043 0.84874 0.98253 1.20904 0.98141 0.90300 1.03806 1.20081 0.96275 0.96252 0.91992 1.21225 0.97484 0.94329 0.98803 1.21017 0.98581 0.95747 0.96286 1.20717 1.01815 0.90829 0.93630 1.98372 1.74580 1.31261 1.98898 1.20750 1.02565 0.95905 0.86303 1.98380 1.91735 1.81540 1.31076 1.21029 0.97868 0.92960 0.99693 0.93464 0.78214 0.96113 0.96091 0.90167 0.90293 0.84185 0.84187 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 15 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 15 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 15 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 15 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 15 9 N -0.73 -18.31 5.60 -59.91 -0.34 -18.65 15 10 C 0.16 3.11 6.24 -4.04 -0.03 3.08 15 11 C -0.09 -1.40 5.46 -27.88 -0.15 -1.56 15 12 C -0.04 -0.58 5.13 -104.63 -0.54 -1.12 15 13 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 15 14 C -0.10 -1.03 9.83 -39.55 -0.39 -1.42 15 15 C -0.04 -0.50 6.32 -39.47 -0.25 -0.75 15 16 Cl -0.06 -0.65 27.96 -51.86 -1.45 -2.10 15 17 C -0.03 -0.34 6.32 -39.47 -0.25 -0.59 15 18 Cl -0.06 -0.66 27.96 -51.86 -1.45 -2.11 15 19 C -0.10 -1.22 9.48 -39.56 -0.38 -1.59 15 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.38 9.97 7.67 -40.82 -0.31 9.65 15 22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.08 1.16 8.09 -51.92 -0.42 0.74 15 25 H 0.08 1.17 8.08 -51.93 -0.42 0.75 15 26 H 0.14 1.39 8.06 -52.49 -0.42 0.96 15 27 H 0.14 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.14 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -29.83 279.88 -8.74 -38.57 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.81 Total: 2.91 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.61 Total: -12.83 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.39 Total: -45.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -2.90 Total: -4.21 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.83 -8.74 -38.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258669550.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.758 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds