Wall clock time and date at job start Mon Mar 30 2020 08:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47801 * 270.00270 * 3 2 1 5 5 H 1.48508 * 109.47174 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.47128 * 149.99859 * 3 2 1 7 7 C 1.38809 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99733 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47053 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.38264 * 119.97788 * 270.01801 * 12 11 10 14 14 C 1.38212 * 120.03625 * 180.02562 * 13 12 11 15 15 C 1.38344 * 119.99792 * 359.95605 * 14 13 12 16 16 Cl 1.73605 * 120.01708 * 180.29711 * 15 14 13 17 17 C 1.38445 * 119.96254 * 0.02562 * 15 14 13 18 18 Cl 1.73601 * 120.01534 * 180.02562 * 17 15 14 19 19 C 1.38196 * 119.98121 * 90.00245 * 12 11 10 20 20 H 0.97002 * 120.00128 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99991 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47616 * 60.00034 * 10 9 7 23 23 H 1.09002 * 109.47080 * 299.99721 * 10 9 7 24 24 H 1.09008 * 109.47245 * 59.99933 * 11 10 9 25 25 H 1.09002 * 109.47014 * 299.99840 * 11 10 9 26 26 H 1.07999 * 119.98547 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.99868 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.00416 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8173 -6.1248 -0.0016 13 6 2.1639 -6.7230 -1.1990 14 6 2.8545 -7.9202 -1.1998 15 6 3.2001 -8.5202 -0.0021 16 17 4.0743 -10.0201 -0.0026 17 6 2.8533 -7.9210 1.1968 18 17 3.2869 -8.6723 2.7005 19 6 2.1617 -6.7228 1.1957 20 1 -0.4850 0.8400 -0.0004 21 1 0.3555 -2.3881 -0.0023 22 1 2.6840 -3.7150 0.8888 23 1 2.6854 -3.7141 -0.8912 24 1 0.4374 -4.7618 -0.8925 25 1 0.4368 -4.7622 0.8875 26 1 1.8949 -6.2545 -2.1342 27 1 3.1254 -8.3867 -2.1355 28 1 1.8905 -6.2551 2.1307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258669550.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:04 Heat of formation + Delta-G solvation = -7.050533 kcal Electronic energy + Delta-G solvation = -14068.205027 eV Core-core repulsion = 11362.884748 eV Total energy + Delta-G solvation = -2705.320279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62074 -37.82947 -37.54348 -36.80396 -34.37675 -32.35754 -31.90151 -29.06220 -25.87361 -23.99019 -23.61832 -22.07031 -19.25343 -18.20151 -17.12955 -16.82769 -16.50359 -15.48710 -15.37057 -15.21262 -14.93769 -14.75781 -14.43091 -13.15815 -13.05548 -13.04913 -12.90352 -12.79775 -12.61167 -12.18374 -12.15814 -11.99633 -11.96646 -11.87915 -11.70940 -10.94200 -9.96806 -9.61001 -9.01453 -7.95856 -5.25156 -0.08874 0.09020 0.80647 1.17787 1.48500 1.49833 1.58440 2.40571 2.56977 3.38025 3.57056 3.64958 4.05860 4.13173 4.19116 4.36490 4.41840 4.47052 4.71961 4.79880 4.92435 5.06222 5.14936 5.26327 5.49283 5.51983 5.61420 6.26737 7.33283 8.07878 8.31559 9.27437 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.039456 B = 0.003736 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.479866 B = 7491.856896 C = 7727.564795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.159 3.841 11 C -0.079 4.079 12 C -0.057 4.057 13 C -0.097 4.097 14 C -0.091 4.091 15 C -0.047 4.047 16 Cl -0.052 7.052 17 C -0.038 4.038 18 Cl -0.055 7.055 19 C -0.102 4.102 20 H 0.252 0.748 21 H 0.376 0.624 22 H 0.017 0.983 23 H 0.024 0.976 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.167 0.833 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -20.485 -0.617 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.033 3.967 11 C -0.116 4.116 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.075 4.075 16 Cl -0.023 7.023 17 C -0.066 4.066 18 Cl -0.026 7.026 19 C -0.121 4.121 20 H 0.061 0.939 21 H 0.208 0.792 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.174 0.826 27 H 0.184 0.816 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.103 -20.600 -0.465 21.490 hybrid contribution 0.058 0.846 0.331 0.911 sum 6.161 -19.753 -0.134 20.692 Atomic orbital electron populations 1.69807 1.06541 1.26169 1.59332 1.25576 0.96454 1.01125 1.03573 0.85142 0.77686 0.79429 0.77519 1.21241 1.22083 1.19555 1.19612 0.91490 0.85365 1.41446 0.90781 1.42572 1.05772 1.01145 1.89525 1.20726 0.93767 0.84352 0.97852 1.20662 0.97200 0.89695 1.04052 1.19893 0.97296 0.95700 0.92885 1.21431 0.96808 0.94438 0.98825 1.21294 0.97518 0.95211 0.96964 1.20918 1.01590 0.91124 0.93823 1.98377 1.74347 1.30727 1.98889 1.20825 1.02974 0.96045 0.86751 1.98377 1.91719 1.81447 1.31048 1.21066 0.98016 0.93235 0.99776 0.93915 0.79187 0.96510 0.95818 0.89617 0.90472 0.82557 0.81563 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.34 15 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 15 3 Si 0.97 45.76 29.55 68.60 2.03 47.79 15 4 H -0.29 -13.13 7.11 99.48 0.71 -12.43 15 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 15 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 15 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 15 9 N -0.75 -37.32 5.60 -343.46 -1.92 -39.24 15 10 C 0.16 6.10 6.24 86.38 0.54 6.64 15 11 C -0.08 -2.28 5.46 29.85 0.16 -2.12 15 12 C -0.06 -1.38 5.13 -19.87 -0.10 -1.48 15 13 C -0.10 -1.97 9.70 22.27 0.22 -1.76 15 14 C -0.09 -1.69 9.83 22.29 0.22 -1.47 15 15 C -0.05 -1.00 6.32 22.34 0.14 -0.86 15 16 Cl -0.05 -1.03 27.96 -2.72 -0.08 -1.11 15 17 C -0.04 -0.90 6.32 22.34 0.14 -0.75 15 18 Cl -0.05 -1.23 27.96 -2.72 -0.08 -1.30 15 19 C -0.10 -2.46 9.48 22.29 0.21 -2.25 15 20 H 0.25 14.78 8.31 -92.71 -0.77 14.01 15 21 H 0.38 19.72 7.67 -92.71 -0.71 19.01 15 22 H 0.02 0.66 8.14 -2.39 -0.02 0.64 15 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 24 H 0.09 2.38 8.09 -2.38 -0.02 2.36 15 25 H 0.08 2.25 8.08 -2.39 -0.02 2.23 15 26 H 0.16 2.65 8.06 -2.91 -0.02 2.63 15 27 H 0.17 2.17 8.06 -2.91 -0.02 2.14 15 28 H 0.14 3.35 8.06 -2.91 -0.02 3.32 15 Total: -1.00 -62.32 279.88 3.54 -58.79 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.47 Total: 14.20 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 2.84 Total: -20.78 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -1.64 Total: -97.58 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.15 Total: -2.41 kcal Total: -62.32 3.54 -58.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258669550.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.736 kcal (2) G-P(sol) polarization free energy of solvation -62.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds