Wall clock time and date at job start Mon Mar 30 2020 08:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00064 * 2 1 4 4 H 1.09001 * 109.47238 * 184.17284 * 3 2 1 5 5 C 1.50703 * 109.47318 * 64.17091 * 3 2 1 6 6 H 1.07998 * 119.99783 * 244.17275 * 5 3 2 7 7 C 1.37877 * 119.99998 * 64.16988 * 5 3 2 8 8 N 1.31516 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00195 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47235 * 59.99446 * 9 7 5 11 11 H 1.48497 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47096 * 299.99795 * 9 7 5 13 13 C 1.50703 * 109.46986 * 304.17132 * 3 2 1 14 14 C 1.38239 * 119.99197 * 101.64880 * 13 3 2 15 15 C 1.38198 * 120.02390 * 179.97438 * 14 13 3 16 16 C 1.38386 * 120.01616 * 359.97438 * 15 14 13 17 17 Cl 1.73597 * 120.00707 * 179.97438 * 16 15 14 18 18 C 1.38312 * 119.98159 * 359.97438 * 16 15 14 19 19 C 1.38338 * 119.99023 * 281.37014 * 13 3 2 20 20 Cl 1.73600 * 120.00819 * 0.02562 * 19 13 3 21 21 H 1.08996 * 109.47239 * 175.56973 * 1 2 3 22 22 H 1.08999 * 109.47095 * 295.57857 * 1 2 3 23 23 H 1.09005 * 109.46755 * 55.57086 * 1 2 3 24 24 H 1.00893 * 111.00019 * 236.03989 * 2 1 3 25 25 H 0.97008 * 119.99613 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.98886 * 359.94762 * 14 13 3 27 27 H 1.08001 * 119.99556 * 179.97438 * 15 14 13 28 28 H 1.07994 * 120.00961 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0826 1.3434 -0.0748 5 6 1.5976 2.0623 1.2789 6 1 0.9405 2.9189 1.2480 7 6 2.0724 1.6008 2.4883 8 7 2.8721 0.5574 2.5258 9 14 1.5787 2.4567 4.0735 10 1 0.1023 2.4056 4.2246 11 1 2.2177 1.7717 5.2257 12 1 2.0231 3.8730 4.0305 13 6 1.4305 2.1264 -1.1756 14 6 0.3896 3.0168 -0.9893 15 6 -0.1287 3.7099 -2.0668 16 6 0.3944 3.5133 -3.3328 17 17 -0.2573 4.3835 -4.6862 18 6 1.4365 2.6233 -3.5195 19 6 1.9574 1.9324 -2.4399 20 17 3.2689 0.8191 -2.6724 21 1 -0.3633 -1.0245 -0.0794 22 1 -0.3633 0.4437 0.9269 23 1 -0.3633 0.5811 -0.8477 24 1 1.8306 -0.5262 -0.7813 25 1 3.2059 0.2325 3.3767 26 1 -0.0190 3.1706 -0.0015 27 1 -0.9422 4.4051 -1.9208 28 1 1.8454 2.4698 -4.5072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259143017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:00 Heat of formation + Delta-G solvation = 16.598037 kcal Electronic energy + Delta-G solvation = -15148.434773 eV Core-core repulsion = 12444.139973 eV Total energy + Delta-G solvation = -2704.294800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31373 -36.63048 -35.99642 -35.18993 -31.99077 -30.63354 -30.20418 -26.68699 -24.67857 -22.58271 -22.30240 -20.03140 -17.06470 -16.45855 -15.30139 -15.08345 -14.53141 -14.45926 -13.82885 -13.68384 -13.28729 -12.86166 -12.21051 -12.03025 -11.83619 -11.61915 -11.02481 -10.89134 -10.79735 -10.73314 -10.71361 -10.51404 -10.30246 -9.82675 -9.08383 -8.55994 -8.46969 -8.13173 -7.00724 -5.96101 -4.09299 1.40387 1.50408 2.11427 2.66021 3.30592 3.36332 3.37808 3.89318 4.41039 5.06328 5.24545 5.29171 5.47259 5.65580 5.85750 5.91186 6.10481 6.32434 6.38154 6.47954 6.64033 6.75738 6.98429 7.07249 7.45268 7.80010 8.07639 8.42719 8.76894 9.03471 9.58835 11.10164 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.007231 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.854165 B = 3871.197672 C = 4566.684869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.646 5.646 3 C 0.248 3.752 4 H 0.063 0.937 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.087 3.913 8 N -0.847 5.847 9 Si 0.883 3.117 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.063 4.063 14 C -0.079 4.079 15 C -0.116 4.116 16 C -0.043 4.043 17 Cl -0.082 7.082 18 C -0.111 4.111 19 C -0.036 4.036 20 Cl -0.064 7.064 21 H 0.036 0.964 22 H 0.069 0.931 23 H -0.001 1.001 24 H 0.304 0.696 25 H 0.258 0.742 26 H 0.154 0.846 27 H 0.130 0.870 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 3.526 -10.291 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.273 5.273 3 C 0.140 3.860 4 H 0.081 0.919 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.121 4.121 8 N -0.481 5.481 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.067 4.067 14 C -0.097 4.097 15 C -0.135 4.135 16 C -0.070 4.070 17 Cl -0.054 7.054 18 C -0.131 4.131 19 C -0.064 4.064 20 Cl -0.035 7.035 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.017 0.983 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.172 0.828 27 H 0.148 0.852 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.805 3.255 -9.603 10.830 hybrid contribution -0.440 0.714 -0.266 0.880 sum -4.246 3.969 -9.869 11.453 Atomic orbital electron populations 1.21981 0.90478 0.98250 1.00040 1.60971 1.05531 1.14768 1.46018 1.18435 0.95904 0.83520 0.88102 0.91893 1.20899 1.32222 1.14132 0.90349 0.92122 1.24902 0.94359 0.94258 0.98551 1.70051 1.30458 1.22221 1.25372 0.86840 0.78834 0.79774 0.83506 1.20290 1.21313 1.20299 1.21714 0.93979 0.95445 0.95547 1.21505 0.95185 0.93859 0.99196 1.21223 1.00639 1.00770 0.90855 1.20587 0.98762 0.98944 0.88669 1.98334 1.85690 1.75787 1.45556 1.20723 0.96656 0.96940 0.98750 1.20828 0.93986 0.96990 0.94561 1.98352 1.47138 1.60973 1.97025 0.94476 0.91256 0.98275 0.88011 0.93174 0.82818 0.85234 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 9.98 60.07 0.60 1.47 15 2 N -0.65 -14.65 6.34 -116.49 -0.74 -15.39 15 3 C 0.25 5.75 1.96 -70.01 -0.14 5.61 15 4 H 0.06 1.63 7.42 -51.93 -0.39 1.25 15 5 C -0.54 -13.53 7.04 -34.44 -0.24 -13.77 15 6 H 0.06 1.46 5.29 -52.49 -0.28 1.18 15 7 C 0.09 2.28 5.41 -17.82 -0.10 2.18 15 8 N -0.85 -23.55 12.96 55.43 0.72 -22.83 15 9 Si 0.88 20.25 29.54 -169.99 -5.02 15.23 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 13 C -0.06 -1.26 3.99 -104.58 -0.42 -1.67 15 14 C -0.08 -1.42 8.08 -39.60 -0.32 -1.74 15 15 C -0.12 -1.80 9.83 -39.54 -0.39 -2.19 15 16 C -0.04 -0.65 6.32 -39.50 -0.25 -0.90 15 17 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 15 18 C -0.11 -1.75 9.62 -39.51 -0.38 -2.13 15 19 C -0.04 -0.65 6.31 -39.50 -0.25 -0.90 15 20 Cl -0.06 -1.09 26.66 -51.86 -1.38 -2.47 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.07 1.52 7.37 -51.93 -0.38 1.14 15 23 H 0.00 -0.02 6.23 -51.93 -0.32 -0.34 15 24 H 0.30 6.45 7.96 -39.30 -0.31 6.14 15 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 26 H 0.15 2.85 5.69 -52.49 -0.30 2.55 15 27 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 28 H 0.13 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 266.83 15.07 4.02 4.02 Total: -1.00 -26.50 266.83 -8.17 -34.67 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.38 Total: 3.40 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.88 Total: -14.04 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.02 Total: -38.23 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -2.88 Total: -5.05 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.50 -8.17 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259143017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.267 kcal (2) G-P(sol) polarization free energy of solvation -26.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds