Wall clock time and date at job start Mon Mar 30 2020 08:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 111.00064 * 2 1 4 4 H 1.09001 * 109.47238 * 184.17284 * 3 2 1 5 5 C 1.50703 * 109.47318 * 64.17091 * 3 2 1 6 6 H 1.07998 * 119.99783 * 244.17275 * 5 3 2 7 7 C 1.37877 * 119.99998 * 64.16988 * 5 3 2 8 8 N 1.31516 * 119.99741 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00195 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47235 * 59.99446 * 9 7 5 11 11 H 1.48497 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47096 * 299.99795 * 9 7 5 13 13 C 1.50703 * 109.46986 * 304.17132 * 3 2 1 14 14 C 1.38239 * 119.99197 * 101.64880 * 13 3 2 15 15 C 1.38198 * 120.02390 * 179.97438 * 14 13 3 16 16 C 1.38386 * 120.01616 * 359.97438 * 15 14 13 17 17 Cl 1.73597 * 120.00707 * 179.97438 * 16 15 14 18 18 C 1.38312 * 119.98159 * 359.97438 * 16 15 14 19 19 C 1.38338 * 119.99023 * 281.37014 * 13 3 2 20 20 Cl 1.73600 * 120.00819 * 0.02562 * 19 13 3 21 21 H 1.08996 * 109.47239 * 175.56973 * 1 2 3 22 22 H 1.08999 * 109.47095 * 295.57857 * 1 2 3 23 23 H 1.09005 * 109.46755 * 55.57086 * 1 2 3 24 24 H 1.00893 * 111.00019 * 236.03989 * 2 1 3 25 25 H 0.97008 * 119.99613 * 180.02562 * 8 7 5 26 26 H 1.07997 * 119.98886 * 359.94762 * 14 13 3 27 27 H 1.08001 * 119.99556 * 179.97438 * 15 14 13 28 28 H 1.07994 * 120.00961 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 3.0826 1.3434 -0.0748 5 6 1.5976 2.0623 1.2789 6 1 0.9405 2.9189 1.2480 7 6 2.0724 1.6008 2.4883 8 7 2.8721 0.5574 2.5258 9 14 1.5787 2.4567 4.0735 10 1 0.1023 2.4056 4.2246 11 1 2.2177 1.7717 5.2257 12 1 2.0231 3.8730 4.0305 13 6 1.4305 2.1264 -1.1756 14 6 0.3896 3.0168 -0.9893 15 6 -0.1287 3.7099 -2.0668 16 6 0.3944 3.5133 -3.3328 17 17 -0.2573 4.3835 -4.6862 18 6 1.4365 2.6233 -3.5195 19 6 1.9574 1.9324 -2.4399 20 17 3.2689 0.8191 -2.6724 21 1 -0.3633 -1.0245 -0.0794 22 1 -0.3633 0.4437 0.9269 23 1 -0.3633 0.5811 -0.8477 24 1 1.8306 -0.5262 -0.7813 25 1 3.2059 0.2325 3.3767 26 1 -0.0190 3.1706 -0.0015 27 1 -0.9422 4.4051 -1.9208 28 1 1.8454 2.4698 -4.5072 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259143017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:08:59 Heat of formation + Delta-G solvation = 1.385207 kcal Electronic energy + Delta-G solvation = -15149.094451 eV Core-core repulsion = 12444.139973 eV Total energy + Delta-G solvation = -2704.954478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70126 -37.88638 -37.38222 -36.70653 -33.93522 -32.00210 -31.63244 -28.43220 -26.43325 -24.11304 -23.68799 -21.65142 -18.46723 -18.18408 -16.86050 -16.67797 -16.22184 -15.95151 -15.33176 -15.08217 -14.73551 -14.41794 -13.84250 -13.58383 -13.23435 -12.92531 -12.75778 -12.61750 -12.46695 -12.27186 -11.94871 -11.90261 -11.84297 -11.57903 -10.94078 -10.45409 -9.87010 -9.50819 -8.71605 -7.94704 -6.11623 0.07130 0.18522 0.87293 1.36000 1.48588 1.49306 1.55152 2.49730 2.54880 3.32336 3.80721 4.02208 4.06544 4.13148 4.33640 4.52815 4.74537 4.80499 4.87339 5.05060 5.16170 5.24505 5.35723 5.62605 5.71256 5.87163 6.19720 6.64271 6.94755 7.22535 7.59383 9.11303 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.007231 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.854165 B = 3871.197672 C = 4566.684869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.666 5.666 3 C 0.254 3.746 4 H 0.027 0.973 5 C -0.540 4.540 6 H 0.068 0.932 7 C 0.037 3.963 8 N -0.884 5.884 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.272 1.272 13 C -0.087 4.087 14 C -0.088 4.088 15 C -0.105 4.105 16 C -0.038 4.038 17 Cl -0.056 7.056 18 C -0.105 4.105 19 C -0.044 4.044 20 Cl -0.064 7.064 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.010 0.990 24 H 0.310 0.690 25 H 0.254 0.746 26 H 0.145 0.855 27 H 0.158 0.842 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 4.791 -11.632 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.293 5.293 3 C 0.147 3.853 4 H 0.045 0.955 5 C -0.579 4.579 6 H 0.086 0.914 7 C -0.166 4.166 8 N -0.521 5.521 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.198 1.198 13 C -0.091 4.091 14 C -0.107 4.107 15 C -0.124 4.124 16 C -0.065 4.065 17 Cl -0.027 7.027 18 C -0.125 4.125 19 C -0.071 4.071 20 Cl -0.035 7.035 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.029 0.971 24 H 0.126 0.874 25 H 0.063 0.937 26 H 0.162 0.838 27 H 0.176 0.824 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.210 4.539 -10.957 12.954 hybrid contribution -0.043 0.377 0.005 0.379 sum -5.253 4.916 -10.953 13.105 Atomic orbital electron populations 1.21881 0.89186 0.99336 0.99386 1.60816 1.06850 1.14919 1.46747 1.18044 0.94020 0.84224 0.89038 0.95513 1.21327 1.31265 1.14054 0.91234 0.91369 1.25606 0.94580 0.94908 1.01507 1.70195 1.32242 1.24060 1.25574 0.85901 0.78600 0.78778 0.79929 1.19617 1.21891 1.19768 1.21362 0.95682 0.96888 0.95147 1.21399 0.95222 0.94317 0.99745 1.21416 1.00665 1.00137 0.90135 1.20701 0.98058 0.98306 0.89465 1.98352 1.85211 1.75030 1.44070 1.20935 0.96388 0.96152 0.98986 1.20868 0.94193 0.97515 0.94549 1.98349 1.47188 1.61054 1.96952 0.92723 0.93244 0.97146 0.87353 0.93712 0.83768 0.82448 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.10 9.98 127.69 1.27 3.38 15 2 N -0.67 -30.55 6.34 -522.46 -3.31 -33.86 15 3 C 0.25 12.00 1.96 43.42 0.09 12.09 15 4 H 0.03 1.45 7.42 -2.39 -0.02 1.43 15 5 C -0.54 -27.49 7.04 25.60 0.18 -27.31 15 6 H 0.07 3.29 5.29 -2.91 -0.02 3.27 15 7 C 0.04 1.99 5.41 84.65 0.46 2.45 15 8 N -0.88 -50.46 12.96 21.45 0.28 -50.18 15 9 Si 0.94 41.98 29.54 68.60 2.03 44.01 15 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 15 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 13 C -0.09 -3.42 3.99 -19.84 -0.08 -3.50 15 14 C -0.09 -3.07 8.08 22.26 0.18 -2.89 15 15 C -0.10 -2.96 9.83 22.30 0.22 -2.74 15 16 C -0.04 -1.04 6.32 22.32 0.14 -0.90 15 17 Cl -0.06 -1.25 28.96 -2.72 -0.08 -1.33 15 18 C -0.11 -3.05 9.62 22.31 0.21 -2.84 15 19 C -0.04 -1.52 6.31 22.32 0.14 -1.38 15 20 Cl -0.06 -2.18 26.66 -2.72 -0.07 -2.25 15 21 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.05 2.17 7.37 -2.39 -0.02 2.15 15 23 H 0.01 0.39 6.23 -2.38 -0.01 0.37 15 24 H 0.31 13.32 7.96 -89.70 -0.71 12.61 15 25 H 0.25 14.02 8.31 -92.70 -0.77 13.25 15 26 H 0.14 5.24 5.69 -2.91 -0.02 5.22 15 27 H 0.16 3.52 8.06 -2.91 -0.02 3.49 15 28 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -56.48 266.83 2.14 -54.34 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.49 Total: 12.90 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 2.81 Total: -23.63 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -3.03 Total: -84.04 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.15 Total: -3.58 kcal Total: -56.48 2.14 -54.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259143017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.724 kcal (2) G-P(sol) polarization free energy of solvation -56.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds