Wall clock time and date at job start Mon Mar 30 2020 08:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 O 1.21435 * 119.99488 * 0.02562 * 4 3 2 6 6 C 1.41019 * 120.00112 * 180.02562 * 4 3 2 7 7 H 1.08004 * 119.99959 * 359.97438 * 6 4 3 8 8 C 1.40457 * 120.00109 * 180.02562 * 6 4 3 9 9 N 1.30524 * 120.00199 * 0.02562 * 8 6 4 10 10 Si 1.86801 * 120.00120 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47101 * 60.00131 * 10 8 6 12 12 H 1.48500 * 109.47156 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47145 * 299.99986 * 10 8 6 14 14 C 1.39705 * 120.00025 * 179.97438 * 2 1 3 15 15 C 1.34029 * 125.21829 * 0.02562 * 14 2 1 16 16 C 1.38691 * 114.72063 * 179.97438 * 15 14 2 17 17 C 1.33301 * 114.94441 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 125.13516 * 179.97438 * 17 16 15 19 19 S 1.75863 * 109.73584 * 359.73367 * 17 16 15 20 20 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 21 21 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 22 22 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 23 23 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 24 24 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 25 25 H 0.96998 * 120.00532 * 180.02562 * 9 8 6 26 26 H 1.07993 * 122.64148 * 359.97438 * 15 14 2 27 27 H 1.07999 * 122.52779 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 8 2.0539 1.0204 -2.3438 6 6 3.1426 2.9041 -1.6785 7 1 3.4934 3.5119 -0.8576 8 6 3.3763 3.3098 -3.0028 9 7 2.9510 2.5760 -3.9949 10 14 4.2946 4.9003 -3.3441 11 1 5.6522 4.8260 -2.7468 12 1 4.4091 5.1007 -4.8110 13 1 3.5522 6.0387 -2.7459 14 6 2.1635 -1.2099 0.0005 15 6 1.6017 -2.4267 0.0006 16 6 2.5024 -3.4814 0.0006 17 6 3.7866 -3.1240 0.0011 18 17 5.1298 -4.2238 0.0019 19 16 3.9149 -1.3700 -0.0061 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1383 0.5138 25 1 3.1127 2.8559 -4.9094 26 1 0.5319 -2.5744 0.0006 27 1 2.1871 -4.5143 0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259202301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:59 Heat of formation + Delta-G solvation = -23.573440 kcal Electronic energy + Delta-G solvation = -14739.822813 eV Core-core repulsion = 12035.829753 eV Total energy + Delta-G solvation = -2703.993060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79683 -38.62160 -37.57415 -36.19756 -34.66615 -30.74644 -29.38562 -28.38607 -26.04038 -23.65955 -21.59684 -20.18521 -18.87159 -18.46927 -17.26891 -17.06656 -16.07434 -15.82067 -15.56432 -14.88794 -14.53705 -14.43775 -14.17830 -13.89056 -13.39791 -13.28791 -12.90635 -12.84176 -12.62249 -12.39239 -12.33165 -12.11430 -12.02963 -11.48256 -10.95643 -10.69763 -9.55986 -9.46103 -8.45429 -7.93839 -7.09052 0.07259 0.26557 0.91373 1.36689 1.38266 1.41020 1.51964 1.87138 2.16952 2.18966 2.26652 3.34098 4.18304 4.30818 4.36990 4.54090 4.59054 4.59923 4.71389 4.85942 5.00881 5.16441 5.19406 5.43511 5.94943 6.02993 6.27848 6.73111 6.81069 8.27894 8.51263 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.006089 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.015024 B = 4597.678412 C = 5280.980618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.585 5.585 3 C 0.083 3.917 4 C 0.326 3.674 5 O -0.575 6.575 6 C -0.566 4.566 7 H 0.088 0.912 8 C 0.031 3.969 9 N -0.788 5.788 10 Si 0.988 3.012 11 H -0.254 1.254 12 H -0.274 1.274 13 H -0.251 1.251 14 C 0.145 3.855 15 C -0.277 4.277 16 C -0.054 4.054 17 C -0.218 4.218 18 Cl -0.024 7.024 19 S 0.097 5.903 20 H 0.079 0.921 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.279 0.721 26 H 0.157 0.843 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -5.773 9.095 10.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.294 5.294 3 C -0.042 4.042 4 C 0.222 3.778 5 O -0.466 6.466 6 C -0.598 4.598 7 H 0.106 0.894 8 C -0.188 4.188 9 N -0.417 5.417 10 Si 0.807 3.193 11 H -0.178 1.178 12 H -0.198 1.198 13 H -0.175 1.175 14 C -0.078 4.078 15 C -0.310 4.310 16 C -0.086 4.086 17 C -0.362 4.362 18 Cl 0.005 6.995 19 S 0.352 5.648 20 H 0.097 0.903 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.127 0.873 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.175 0.825 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.465 -5.110 8.513 9.940 hybrid contribution -0.588 -0.313 -0.447 0.802 sum -0.123 -5.423 8.066 9.720 Atomic orbital electron populations 1.21718 0.77225 1.02819 1.02035 1.45938 1.05742 1.01052 1.76670 1.22096 0.97094 0.85223 0.99759 1.20615 0.81138 0.87061 0.89027 1.90403 1.52166 1.56737 1.47269 1.21283 1.35905 1.08581 0.93985 0.89353 1.27138 0.94595 1.01588 0.95513 1.70079 1.33948 1.37114 1.00592 0.85210 0.79301 0.76861 0.77955 1.17825 1.19833 1.17469 1.22405 0.94724 0.90586 1.00062 1.19686 1.01799 0.88949 1.20580 1.20002 0.89399 1.01400 0.97800 1.24480 0.92906 0.93288 1.25493 1.98293 1.43640 1.59840 1.97770 1.84578 1.01712 1.00793 1.77754 0.90287 0.92385 0.91165 0.87291 0.89993 0.91030 0.82539 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.28 10.37 127.77 1.33 4.61 15 2 N -0.59 -22.51 2.50 -730.25 -1.82 -24.33 15 3 C 0.08 3.41 5.77 85.63 0.49 3.90 15 4 C 0.33 17.53 6.97 26.37 0.18 17.71 15 5 O -0.57 -35.89 14.95 -3.51 -0.05 -35.94 15 6 C -0.57 -30.15 9.22 23.49 0.22 -29.94 15 7 H 0.09 4.19 7.85 -2.91 -0.02 4.17 15 8 C 0.03 1.64 5.50 85.43 0.47 2.11 15 9 N -0.79 -45.80 11.72 21.91 0.26 -45.54 15 10 Si 0.99 38.60 29.56 68.60 2.03 40.63 15 11 H -0.25 -9.46 7.11 99.48 0.71 -8.76 15 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 13 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 14 C 0.15 5.53 7.03 82.48 0.58 6.11 15 15 C -0.28 -9.09 9.43 21.42 0.20 -8.89 15 16 C -0.05 -1.63 10.13 21.26 0.22 -1.42 15 17 C -0.22 -7.18 7.08 66.70 0.47 -6.71 15 18 Cl -0.02 -0.68 29.28 -2.72 -0.08 -0.76 15 19 S 0.10 3.69 21.95 -56.49 -1.24 2.45 15 20 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.06 1.93 8.07 -2.39 -0.02 1.91 15 22 H 0.07 2.06 6.67 -2.39 -0.02 2.04 15 23 H 0.11 3.88 8.07 -2.39 -0.02 3.86 15 24 H 0.08 3.22 7.12 -2.38 -0.02 3.21 15 25 H 0.28 14.72 8.29 -92.71 -0.77 13.95 15 26 H 0.16 4.40 6.84 -2.91 -0.02 4.38 15 27 H 0.17 3.95 8.06 -2.91 -0.02 3.92 15 Total: -1.00 -68.05 271.91 4.44 -63.61 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.20 Total: 12.41 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.16 Total: -12.52 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.57 Total: -69.88 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.05 Total: -35.94 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.24 Total: 2.45 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -68.05 4.44 -63.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259202301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.035 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds