Wall clock time and date at job start Mon Mar 30 2020 08:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48499 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46919 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47378 * 59.99653 * 3 2 1 7 7 C 1.37879 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47314 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47060 * 54.99844 * 10 9 7 12 12 N 1.46894 * 109.47061 * 294.99882 * 10 9 7 13 13 C 1.50700 * 109.47144 * 174.99984 * 10 9 7 14 14 C 1.38234 * 119.99301 * 99.97912 * 13 10 9 15 15 C 1.38205 * 120.02561 * 180.02562 * 14 13 10 16 16 C 1.38385 * 120.01103 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.00274 * 179.97438 * 16 15 14 18 18 C 1.38304 * 119.98984 * 359.97438 * 16 15 14 19 19 C 1.38337 * 119.98947 * 279.99602 * 13 10 9 20 20 Cl 1.73598 * 120.01274 * 0.02562 * 19 13 10 21 21 H 0.97003 * 119.99925 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47010 * 59.99419 * 9 7 2 23 23 H 1.08996 * 109.47179 * 299.99735 * 9 7 2 24 24 H 1.00901 * 111.00048 * 176.04358 * 12 10 9 25 25 H 1.00894 * 111.00462 * 299.99592 * 12 10 9 26 26 H 1.08002 * 119.99117 * 0.04183 * 14 13 10 27 27 H 1.07999 * 119.99496 * 180.27416 * 15 14 13 28 28 H 1.07992 * 120.01774 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2535 -5.7312 -0.9995 15 6 0.5658 -6.9247 -0.8868 16 6 0.1189 -7.3518 0.3513 17 17 -0.7455 -8.8507 0.4926 18 6 0.3610 -6.5843 1.4761 19 6 1.0502 -5.3899 1.3627 20 17 1.3536 -4.4254 2.7739 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.7160 -4.3732 -1.2523 25 1 2.3961 -3.7518 -2.0507 26 1 1.6019 -5.3982 -1.9660 27 1 0.3806 -7.5261 -1.7645 28 1 0.0121 -6.9169 2.4425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259264120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:14 Heat of formation + Delta-G solvation = 2.143170 kcal Electronic energy + Delta-G solvation = -14704.985872 eV Core-core repulsion = 12000.064262 eV Total energy + Delta-G solvation = -2704.921610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62607 -36.83013 -36.14439 -35.26660 -32.48082 -30.87645 -29.77840 -28.29782 -24.59575 -22.70258 -22.22977 -19.86569 -17.45780 -16.36050 -15.96681 -15.25456 -15.04043 -14.32006 -14.16046 -13.88524 -13.78296 -12.97356 -12.43803 -12.14025 -11.82084 -11.71521 -11.33095 -11.01265 -10.95491 -10.88196 -10.51623 -10.45513 -10.27354 -9.64441 -9.07627 -8.86898 -8.31979 -8.29376 -8.10074 -5.91286 -3.89802 1.09301 1.14859 1.91176 2.47696 3.37417 3.44856 3.49780 3.53442 4.54179 4.72178 4.90509 5.02700 5.14202 5.35472 5.46164 5.52868 5.66676 6.01721 6.08191 6.17206 6.37293 6.59789 6.79297 7.51134 7.65813 7.91128 8.04773 8.09841 8.50703 9.15912 9.71924 11.20505 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.005397 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.625323 B = 5186.717444 C = 5469.326398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.128 3.872 11 H 0.090 0.910 12 N -0.820 5.820 13 C -0.082 4.082 14 C -0.108 4.108 15 C -0.103 4.103 16 C -0.040 4.040 17 Cl -0.073 7.073 18 C -0.102 4.102 19 C -0.021 4.021 20 Cl -0.045 7.045 21 H 0.257 0.743 22 H 0.015 0.985 23 H 0.029 0.971 24 H 0.324 0.676 25 H 0.335 0.665 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -15.810 0.562 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.016 3.984 11 H 0.108 0.892 12 N -0.348 5.348 13 C -0.085 4.085 14 C -0.126 4.126 15 C -0.122 4.122 16 C -0.067 4.067 17 Cl -0.044 7.044 18 C -0.121 4.121 19 C -0.049 4.049 20 Cl -0.016 7.016 21 H 0.067 0.933 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.135 0.865 25 H 0.149 0.851 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.129 -14.971 0.902 15.041 hybrid contribution -0.210 -0.152 -0.012 0.260 sum 0.918 -15.123 0.890 15.177 Atomic orbital electron populations 1.69981 1.05978 1.26243 1.51966 1.25005 0.94796 0.99132 0.95937 0.86544 0.80229 0.83973 0.77279 1.19718 1.21298 1.21355 1.21138 0.93358 0.89862 1.48611 0.91896 1.19153 0.92753 0.90333 0.97699 1.20991 0.95185 0.89489 0.92728 0.89197 1.58777 1.17751 1.54375 1.03904 1.21530 0.97137 0.98734 0.91101 1.20938 0.99253 0.93795 0.98635 1.21047 0.98151 0.96914 0.96039 1.20615 1.01371 0.89849 0.94845 1.98356 1.75589 1.32100 1.98351 1.20862 0.99249 0.93366 0.98635 1.20645 1.01712 0.93201 0.89360 1.98399 1.94265 1.70432 1.38481 0.93302 0.96717 0.95269 0.86472 0.85059 0.84522 0.84768 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.26 15 2 C 0.05 1.46 5.46 -17.82 -0.10 1.36 15 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 7 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 15 8 H 0.06 1.75 7.74 -52.49 -0.41 1.34 15 9 C 0.04 0.94 4.54 -27.88 -0.13 0.81 15 10 C 0.13 2.47 2.38 -68.87 -0.16 2.31 15 11 H 0.09 1.82 7.36 -51.93 -0.38 1.44 15 12 N -0.82 -14.13 8.42 -5.66 -0.05 -14.18 15 13 C -0.08 -1.35 5.08 -104.59 -0.53 -1.89 15 14 C -0.11 -1.50 9.25 -39.59 -0.37 -1.86 15 15 C -0.10 -1.29 9.83 -39.54 -0.39 -1.68 15 16 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 15 17 Cl -0.07 -0.83 28.96 -51.86 -1.50 -2.33 15 18 C -0.10 -1.43 9.62 -39.51 -0.38 -1.81 15 19 C -0.02 -0.35 6.31 -39.50 -0.25 -0.60 15 20 Cl -0.04 -0.76 26.65 -51.86 -1.38 -2.14 15 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 15 23 H 0.03 0.77 7.30 -51.93 -0.38 0.39 15 24 H 0.32 4.58 9.06 -39.29 -0.36 4.22 15 25 H 0.34 5.39 7.29 -39.29 -0.29 5.11 15 26 H 0.14 1.66 6.25 -52.49 -0.33 1.33 15 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.14 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 273.34 15.07 4.12 4.12 Total: -1.00 -29.84 273.34 -8.49 -38.33 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.54 Total: 3.54 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.86 Total: -18.02 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.69 Total: -40.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -2.88 Total: -4.47 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.84 -8.49 -38.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259264120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds