Wall clock time and date at job start Mon Mar 30 2020 08:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48499 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46919 * 299.99939 * 3 2 1 6 6 H 1.48501 * 109.47378 * 59.99653 * 3 2 1 7 7 C 1.37879 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47314 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47060 * 54.99844 * 10 9 7 12 12 N 1.46894 * 109.47061 * 294.99882 * 10 9 7 13 13 C 1.50700 * 109.47144 * 174.99984 * 10 9 7 14 14 C 1.38234 * 119.99301 * 99.97912 * 13 10 9 15 15 C 1.38205 * 120.02561 * 180.02562 * 14 13 10 16 16 C 1.38385 * 120.01103 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.00274 * 179.97438 * 16 15 14 18 18 C 1.38304 * 119.98984 * 359.97438 * 16 15 14 19 19 C 1.38337 * 119.98947 * 279.99602 * 13 10 9 20 20 Cl 1.73598 * 120.01274 * 0.02562 * 19 13 10 21 21 H 0.97003 * 119.99925 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47010 * 59.99419 * 9 7 2 23 23 H 1.08996 * 109.47179 * 299.99735 * 9 7 2 24 24 H 1.00901 * 111.00048 * 176.04358 * 12 10 9 25 25 H 1.00894 * 111.00462 * 299.99592 * 12 10 9 26 26 H 1.08002 * 119.99117 * 0.04183 * 14 13 10 27 27 H 1.07999 * 119.99496 * 180.27416 * 15 14 13 28 28 H 1.07992 * 120.01774 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.2535 -5.7312 -0.9995 15 6 0.5658 -6.9247 -0.8868 16 6 0.1189 -7.3518 0.3513 17 17 -0.7455 -8.8507 0.4926 18 6 0.3610 -6.5843 1.4761 19 6 1.0502 -5.3899 1.3627 20 17 1.3536 -4.4254 2.7739 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.7160 -4.3732 -1.2523 25 1 2.3961 -3.7518 -2.0507 26 1 1.6019 -5.3982 -1.9660 27 1 0.3806 -7.5261 -1.7645 28 1 0.0121 -6.9169 2.4425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259264120.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:14 Heat of formation + Delta-G solvation = -16.059313 kcal Electronic energy + Delta-G solvation = -14705.775191 eV Core-core repulsion = 12000.064262 eV Total energy + Delta-G solvation = -2705.710929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80455 -37.92088 -37.41249 -36.65949 -34.52250 -32.01147 -30.99803 -30.16877 -26.32393 -23.94108 -23.71196 -21.35533 -18.76237 -18.20045 -17.29537 -16.68759 -16.42425 -16.13663 -15.41032 -15.01113 -14.96283 -14.45795 -14.23125 -13.38596 -13.29686 -13.11620 -12.96734 -12.68522 -12.45798 -12.11882 -12.11334 -11.94549 -11.83353 -11.43415 -11.13911 -10.48434 -9.99927 -9.57745 -9.46445 -8.09245 -6.14114 -0.05309 0.04487 0.83439 1.30796 1.42481 1.43804 1.56710 2.38651 2.49477 3.24653 3.64747 3.74661 3.83670 3.97326 4.18856 4.35567 4.55906 4.63799 4.87032 4.93977 5.05520 5.25235 5.51932 5.54524 5.71694 5.89770 6.31446 6.49305 6.82054 6.99634 7.51738 9.02692 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.005397 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.625323 B = 5186.717444 C = 5469.326398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.047 3.953 10 C 0.144 3.856 11 H 0.076 0.924 12 N -0.828 5.828 13 C -0.104 4.104 14 C -0.104 4.104 15 C -0.094 4.094 16 C -0.038 4.038 17 Cl -0.053 7.053 18 C -0.104 4.104 19 C -0.036 4.036 20 Cl -0.062 7.062 21 H 0.258 0.742 22 H -0.011 1.011 23 H 0.005 0.995 24 H 0.344 0.656 25 H 0.342 0.658 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -17.105 -0.275 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.032 3.968 11 H 0.094 0.906 12 N -0.359 5.359 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.065 4.065 17 Cl -0.024 7.024 18 C -0.123 4.123 19 C -0.064 4.064 20 Cl -0.033 7.033 21 H 0.067 0.933 22 H 0.007 0.993 23 H 0.023 0.977 24 H 0.158 0.842 25 H 0.157 0.843 26 H 0.173 0.827 27 H 0.184 0.816 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.612 -16.289 0.062 16.369 hybrid contribution -0.400 0.119 0.227 0.475 sum 1.212 -16.170 0.289 16.218 Atomic orbital electron populations 1.70104 1.07491 1.27075 1.53280 1.25834 0.95608 1.02756 0.95837 0.85530 0.79223 0.79750 0.77301 1.18880 1.20840 1.21021 1.21478 0.93344 0.91337 1.47628 0.92269 1.18923 0.93126 0.91864 0.95161 1.20404 0.93985 0.89143 0.93267 0.90556 1.58633 1.18241 1.55740 1.03258 1.21284 0.98693 0.98346 0.92400 1.21149 0.98799 0.93855 0.98418 1.21379 0.96597 0.96347 0.96934 1.20780 1.00688 0.90294 0.94746 1.98369 1.75029 1.30671 1.98324 1.21013 0.98758 0.92681 0.99854 1.20790 1.02828 0.93979 0.88775 1.98386 1.94466 1.71107 1.39365 0.93290 0.99310 0.97678 0.84194 0.84276 0.82723 0.81623 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.29 21.45 0.28 -56.91 15 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 15 3 Si 0.96 45.33 29.54 68.60 2.03 47.35 15 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 7 C -0.50 -28.02 8.84 25.60 0.23 -27.79 15 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.05 2.36 4.54 29.85 0.14 2.50 15 10 C 0.14 5.60 2.38 44.17 0.10 5.71 15 11 H 0.08 3.14 7.36 -2.38 -0.02 3.12 15 12 N -0.83 -27.80 8.42 -171.81 -1.45 -29.25 15 13 C -0.10 -3.39 5.08 -19.84 -0.10 -3.49 15 14 C -0.10 -2.68 9.25 22.26 0.21 -2.47 15 15 C -0.09 -2.07 9.83 22.30 0.22 -1.86 15 16 C -0.04 -0.90 6.32 22.32 0.14 -0.76 15 17 Cl -0.05 -1.06 28.96 -2.72 -0.08 -1.14 15 18 C -0.10 -2.76 9.62 22.32 0.21 -2.55 15 19 C -0.04 -1.16 6.31 22.32 0.14 -1.02 15 20 Cl -0.06 -2.14 26.65 -2.72 -0.07 -2.21 15 21 H 0.26 14.94 8.31 -92.71 -0.77 14.17 15 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 15 23 H 0.00 0.27 7.30 -2.39 -0.02 0.26 15 24 H 0.34 9.18 9.06 -89.69 -0.81 8.36 15 25 H 0.34 10.62 7.29 -89.70 -0.65 9.97 15 26 H 0.16 3.35 6.25 -2.91 -0.02 3.33 15 27 H 0.17 2.61 8.06 -2.91 -0.02 2.59 15 28 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -64.25 273.34 2.20 -62.05 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -0.26 Total: 11.60 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 1.75 Total: -31.50 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.16 Total: -86.16 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -0.15 Total: -3.35 kcal Total: -64.25 2.20 -62.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259264120.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.991 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds