Wall clock time and date at job start Mon Mar 30 2020 08:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46889 * 111.00232 * 2 1 4 4 H 1.09003 * 109.47648 * 185.65482 * 3 2 1 5 5 C 1.50704 * 109.47143 * 305.65559 * 3 2 1 6 6 H 1.08000 * 119.99959 * 120.00278 * 5 3 2 7 7 C 1.37879 * 119.99932 * 299.99724 * 5 3 2 8 8 N 1.31514 * 120.00022 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47533 * 59.99673 * 9 7 5 11 11 H 1.48500 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48512 * 109.46986 * 299.99888 * 9 7 5 13 13 C 1.50699 * 109.47206 * 65.65381 * 3 2 1 14 14 C 1.38270 * 119.98039 * 209.96935 * 13 3 2 15 15 C 1.38204 * 120.03619 * 179.97438 * 14 13 3 16 16 C 1.38350 * 120.00045 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 120.02051 * 180.02562 * 16 15 14 18 18 C 1.38441 * 119.96033 * 359.97438 * 16 15 14 19 19 Cl 1.73606 * 120.01840 * 179.97438 * 18 16 15 20 20 C 1.38201 * 119.98272 * 29.96880 * 13 3 2 21 21 H 1.09004 * 109.46784 * 305.10523 * 1 2 3 22 22 H 1.08998 * 109.47048 * 65.10741 * 1 2 3 23 23 H 1.09003 * 109.47021 * 185.11629 * 1 2 3 24 24 H 1.00906 * 110.99827 * 236.04518 * 2 1 3 25 25 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 26 26 H 1.07991 * 119.98051 * 0.02562 * 14 13 3 27 27 H 1.08002 * 120.00237 * 180.27145 * 15 14 13 28 28 H 1.08008 * 119.99730 * 359.97412 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 3.0805 1.3441 -0.1013 5 6 1.4023 2.1371 -1.1545 6 1 0.8183 3.0265 -0.9693 7 6 1.6054 1.7024 -2.4471 8 7 2.3163 0.6192 -2.6725 9 14 0.8708 2.6520 -3.8781 10 1 1.4035 4.0382 -3.8780 11 1 1.2317 1.9826 -5.1537 12 1 -0.6074 2.6898 -3.7404 13 6 1.6287 2.0502 1.2944 14 6 1.4354 3.4190 1.3262 15 6 1.0985 4.0427 2.5126 16 6 0.9550 3.2976 3.6694 17 17 0.5312 4.0804 5.1598 18 6 1.1486 1.9271 3.6376 19 17 0.9696 0.9908 5.0884 20 6 1.4858 1.3044 2.4491 21 1 -0.3633 0.5910 0.8408 22 1 -0.3633 0.4326 -0.9322 23 1 -0.3633 -1.0236 0.0916 24 1 1.8306 -0.5262 -0.7814 25 1 2.4589 0.3131 -3.5819 26 1 1.5469 4.0008 0.4233 27 1 0.9433 5.1112 2.5358 28 1 1.6365 0.2352 2.4235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259452572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:02 Heat of formation + Delta-G solvation = 5.539542 kcal Electronic energy + Delta-G solvation = -15010.560390 eV Core-core repulsion = 12305.786057 eV Total energy + Delta-G solvation = -2704.774332 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.13930 -36.54705 -36.17592 -35.19431 -31.99213 -30.45891 -30.21145 -26.75756 -24.49981 -22.65164 -22.22745 -19.90881 -16.85151 -16.61887 -15.31610 -15.10807 -14.66621 -14.40570 -13.59706 -13.45654 -13.33308 -12.72992 -12.34121 -11.85968 -11.59430 -11.39795 -11.25077 -11.05622 -10.88405 -10.69530 -10.66275 -10.47075 -10.40083 -9.84882 -9.70117 -8.75163 -8.40943 -7.97446 -7.19539 -6.21444 -4.37196 1.51313 1.65616 2.19500 2.58056 3.16610 3.22852 3.25004 4.04496 4.23826 5.02158 5.11334 5.50834 5.61337 5.88658 5.96109 6.04095 6.27564 6.45094 6.53318 6.71891 6.77663 7.07321 7.11542 7.20901 7.37277 7.60253 7.93987 8.42742 8.68679 8.89433 9.33758 10.77171 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032342 B = 0.006185 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.538427 B = 4525.836873 C = 5147.904743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.692 5.692 3 C 0.235 3.765 4 H 0.061 0.939 5 C -0.546 4.546 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 C -0.021 4.021 14 C -0.096 4.096 15 C -0.111 4.111 16 C -0.051 4.051 17 Cl -0.077 7.077 18 C -0.037 4.037 19 Cl -0.073 7.073 20 C -0.089 4.089 21 H 0.041 0.959 22 H 0.028 0.972 23 H 0.034 0.966 24 H 0.359 0.641 25 H 0.268 0.732 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 3.087 9.397 10.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.325 5.325 3 C 0.127 3.873 4 H 0.078 0.922 5 C -0.585 4.585 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.022 4.022 14 C -0.114 4.114 15 C -0.129 4.129 16 C -0.079 4.079 17 Cl -0.048 7.048 18 C -0.065 4.065 19 Cl -0.044 7.044 20 C -0.108 4.108 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.180 0.820 25 H 0.078 0.922 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.018 2.856 10.193 10.777 hybrid contribution -0.717 0.800 -1.537 1.876 sum -2.735 3.656 8.656 9.786 Atomic orbital electron populations 1.21847 0.90819 0.98080 0.99919 1.60950 1.06228 1.15379 1.49908 1.18148 0.96357 0.86216 0.86591 0.92186 1.21729 1.33893 1.11864 0.91045 0.91994 1.24980 0.94405 0.95019 0.98941 1.69714 1.38793 1.22807 1.21652 0.86589 0.79649 0.80152 0.81329 1.20037 1.21170 1.20178 1.20678 0.92412 0.93116 0.95999 1.21401 0.97587 0.95292 0.97159 1.20983 1.01339 0.99799 0.90828 1.20619 1.07945 0.91068 0.88232 1.98331 1.92011 1.80694 1.33774 1.20793 1.06805 0.89885 0.88978 1.98337 1.96225 1.72960 1.36890 1.21141 0.98739 1.01741 0.89151 0.94000 0.95294 0.94725 0.82024 0.92249 0.83750 0.85092 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 9.88 60.07 0.59 1.51 15 2 N -0.69 -15.16 5.71 -116.49 -0.67 -15.83 15 3 C 0.23 5.30 2.87 -70.02 -0.20 5.10 15 4 H 0.06 1.49 8.14 -51.93 -0.42 1.06 15 5 C -0.55 -13.19 6.47 -34.44 -0.22 -13.41 15 6 H 0.06 1.48 6.03 -52.49 -0.32 1.16 15 7 C 0.07 1.74 5.23 -17.82 -0.09 1.64 15 8 N -0.89 -22.91 11.62 55.43 0.64 -22.26 15 9 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 15 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 13 C -0.02 -0.41 4.65 -104.62 -0.49 -0.90 15 14 C -0.10 -1.73 8.88 -39.58 -0.35 -2.08 15 15 C -0.11 -1.76 9.83 -39.55 -0.39 -2.15 15 16 C -0.05 -0.83 6.32 -39.47 -0.25 -1.08 15 17 Cl -0.08 -1.11 27.96 -51.86 -1.45 -2.56 15 18 C -0.04 -0.63 6.32 -39.47 -0.25 -0.88 15 19 Cl -0.07 -1.12 27.96 -51.86 -1.45 -2.57 15 20 C -0.09 -1.63 8.06 -39.56 -0.32 -1.94 15 21 H 0.04 0.85 6.45 -51.93 -0.34 0.51 15 22 H 0.03 0.66 7.02 -51.93 -0.36 0.29 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 24 H 0.36 8.48 7.08 -39.29 -0.28 8.21 15 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 15 26 H 0.14 2.60 6.42 -52.49 -0.34 2.27 15 27 H 0.13 1.76 8.06 -52.49 -0.42 1.33 15 28 H 0.15 2.74 7.40 -52.48 -0.39 2.35 15 LS Contribution 265.69 15.07 4.00 4.00 Total: -1.00 -23.93 265.69 -8.33 -32.25 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -2.42 Total: 6.46 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.97 Total: -14.21 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.02 Total: -38.09 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -2.90 Total: -5.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -23.93 -8.33 -32.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259452572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.793 kcal (2) G-P(sol) polarization free energy of solvation -23.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds