Wall clock time and date at job start Mon Mar 30 2020 08:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46889 * 111.00232 * 2 1 4 4 H 1.09003 * 109.47648 * 185.65482 * 3 2 1 5 5 C 1.50704 * 109.47143 * 305.65559 * 3 2 1 6 6 H 1.08000 * 119.99959 * 120.00278 * 5 3 2 7 7 C 1.37879 * 119.99932 * 299.99724 * 5 3 2 8 8 N 1.31514 * 120.00022 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47533 * 59.99673 * 9 7 5 11 11 H 1.48500 * 109.47017 * 180.02562 * 9 7 5 12 12 H 1.48512 * 109.46986 * 299.99888 * 9 7 5 13 13 C 1.50699 * 109.47206 * 65.65381 * 3 2 1 14 14 C 1.38270 * 119.98039 * 209.96935 * 13 3 2 15 15 C 1.38204 * 120.03619 * 179.97438 * 14 13 3 16 16 C 1.38350 * 120.00045 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 120.02051 * 180.02562 * 16 15 14 18 18 C 1.38441 * 119.96033 * 359.97438 * 16 15 14 19 19 Cl 1.73606 * 120.01840 * 179.97438 * 18 16 15 20 20 C 1.38201 * 119.98272 * 29.96880 * 13 3 2 21 21 H 1.09004 * 109.46784 * 305.10523 * 1 2 3 22 22 H 1.08998 * 109.47048 * 65.10741 * 1 2 3 23 23 H 1.09003 * 109.47021 * 185.11629 * 1 2 3 24 24 H 1.00906 * 110.99827 * 236.04518 * 2 1 3 25 25 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 26 26 H 1.07991 * 119.98051 * 0.02562 * 14 13 3 27 27 H 1.08002 * 120.00237 * 180.27145 * 15 14 13 28 28 H 1.08008 * 119.99730 * 359.97412 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 3.0805 1.3441 -0.1013 5 6 1.4023 2.1371 -1.1545 6 1 0.8183 3.0265 -0.9693 7 6 1.6054 1.7024 -2.4471 8 7 2.3163 0.6192 -2.6725 9 14 0.8708 2.6520 -3.8781 10 1 1.4035 4.0382 -3.8780 11 1 1.2317 1.9826 -5.1537 12 1 -0.6074 2.6898 -3.7404 13 6 1.6287 2.0502 1.2944 14 6 1.4354 3.4190 1.3262 15 6 1.0985 4.0427 2.5126 16 6 0.9550 3.2976 3.6694 17 17 0.5312 4.0804 5.1598 18 6 1.1486 1.9271 3.6376 19 17 0.9696 0.9908 5.0884 20 6 1.4858 1.3044 2.4491 21 1 -0.3633 0.5910 0.8408 22 1 -0.3633 0.4326 -0.9322 23 1 -0.3633 -1.0236 0.0916 24 1 1.8306 -0.5262 -0.7814 25 1 2.4589 0.3131 -3.5819 26 1 1.5469 4.0008 0.4233 27 1 0.9433 5.1112 2.5358 28 1 1.6365 0.2352 2.4235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259452572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:01 Heat of formation + Delta-G solvation = -6.455553 kcal Electronic energy + Delta-G solvation = -15011.080536 eV Core-core repulsion = 12305.786057 eV Total energy + Delta-G solvation = -2705.294479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56324 -37.95998 -37.43660 -36.74618 -33.83977 -31.90920 -31.65887 -28.47692 -26.28101 -24.20812 -23.62945 -21.50566 -18.43941 -18.22701 -16.96765 -16.60157 -16.24702 -16.01283 -15.13225 -14.84506 -14.75874 -14.46199 -13.97064 -13.53079 -12.92990 -12.81639 -12.80307 -12.73443 -12.46269 -12.22914 -12.10482 -12.03203 -11.78758 -11.50681 -11.41604 -10.64127 -9.76707 -9.39912 -9.00924 -8.09025 -6.30908 0.12347 0.28979 0.91076 1.27029 1.41325 1.43848 1.49224 2.38798 2.65287 3.11885 3.81405 3.97229 4.16680 4.42717 4.51304 4.57796 4.78878 4.90375 5.05131 5.10650 5.28695 5.33816 5.40561 5.67079 5.73584 5.80930 6.10381 6.64840 6.82399 7.02298 7.42251 8.86570 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032342 B = 0.006185 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.538427 B = 4525.836873 C = 5147.904743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.687 5.687 3 C 0.237 3.763 4 H 0.028 0.972 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.276 1.276 13 C -0.042 4.042 14 C -0.101 4.101 15 C -0.098 4.098 16 C -0.051 4.051 17 Cl -0.055 7.055 18 C -0.041 4.041 19 Cl -0.057 7.057 20 C -0.090 4.090 21 H 0.046 0.954 22 H 0.005 0.995 23 H 0.054 0.946 24 H 0.347 0.653 25 H 0.266 0.734 26 H 0.141 0.859 27 H 0.161 0.839 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 4.197 10.559 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.318 5.318 3 C 0.129 3.871 4 H 0.046 0.954 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.173 4.173 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.043 4.043 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.078 4.078 17 Cl -0.026 7.026 18 C -0.068 4.068 19 Cl -0.028 7.028 20 C -0.109 4.109 21 H 0.065 0.935 22 H 0.024 0.976 23 H 0.073 0.927 24 H 0.166 0.834 25 H 0.075 0.925 26 H 0.159 0.841 27 H 0.179 0.821 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.914 3.979 11.375 12.398 hybrid contribution -0.450 0.472 -1.764 1.881 sum -3.364 4.450 9.611 11.113 Atomic orbital electron populations 1.21793 0.89924 0.99217 0.98798 1.60968 1.06882 1.14971 1.48985 1.17967 0.94514 0.86581 0.88056 0.95419 1.21982 1.33320 1.11821 0.91679 0.91850 1.25611 0.94916 0.95781 1.01017 1.69818 1.39956 1.23931 1.21761 0.85745 0.78784 0.79190 0.78761 1.19490 1.21451 1.20190 1.20431 0.94705 0.93970 0.95168 1.21386 0.97974 0.94563 0.98061 1.21202 0.99644 1.01147 0.89696 1.20760 1.06839 0.90951 0.89253 1.98343 1.91718 1.80183 1.32346 1.20815 1.06353 0.90486 0.89140 1.98342 1.96093 1.72692 1.35672 1.20987 0.99189 1.01359 0.89391 0.93505 0.97627 0.92710 0.83376 0.92512 0.84124 0.82119 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.20 9.88 127.69 1.26 3.46 15 2 N -0.69 -30.54 5.71 -522.48 -2.98 -33.52 15 3 C 0.24 10.90 2.87 43.43 0.12 11.03 15 4 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 5 C -0.55 -26.73 6.47 25.60 0.17 -26.57 15 6 H 0.06 3.01 6.03 -2.91 -0.02 3.00 15 7 C 0.03 1.37 5.23 84.66 0.44 1.81 15 8 N -0.92 -47.88 11.62 21.45 0.25 -47.63 15 9 Si 0.95 40.49 29.54 68.60 2.03 42.52 15 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 15 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 15 12 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 13 C -0.04 -1.63 4.65 -19.87 -0.09 -1.73 15 14 C -0.10 -3.54 8.88 22.27 0.20 -3.34 15 15 C -0.10 -2.88 9.83 22.29 0.22 -2.66 15 16 C -0.05 -1.51 6.32 22.35 0.14 -1.37 15 17 Cl -0.05 -1.41 27.96 -2.72 -0.08 -1.49 15 18 C -0.04 -1.30 6.32 22.34 0.14 -1.16 15 19 Cl -0.06 -1.63 27.96 -2.72 -0.08 -1.70 15 20 C -0.09 -3.24 8.06 22.29 0.18 -3.06 15 21 H 0.05 1.86 6.45 -2.39 -0.02 1.85 15 22 H 0.01 0.24 7.02 -2.39 -0.02 0.22 15 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.35 16.80 7.08 -89.69 -0.63 16.16 15 25 H 0.27 13.46 8.31 -92.71 -0.77 12.69 15 26 H 0.14 4.97 6.42 -2.91 -0.02 4.95 15 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 28 H 0.14 5.21 7.40 -2.91 -0.02 5.18 15 Total: -1.00 -49.90 265.69 2.48 -47.42 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.56 Total: 17.99 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 2.78 Total: -23.59 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.73 Total: -81.15 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.15 Total: -3.19 kcal Total: -49.90 2.48 -47.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259452572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.965 kcal (2) G-P(sol) polarization free energy of solvation -49.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds