Wall clock time and date at job start Mon Mar 30 2020 08:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 111.00040 * 2 1 4 4 H 1.09001 * 109.46547 * 323.57860 * 3 2 1 5 5 C 1.50691 * 109.47242 * 203.57989 * 3 2 1 6 6 H 1.07998 * 120.00006 * 240.00111 * 5 3 2 7 7 C 1.37876 * 120.00154 * 59.72032 * 5 3 2 8 8 N 1.31520 * 120.00106 * 0.28118 * 7 5 3 9 9 Si 1.86807 * 120.00141 * 180.27474 * 7 5 3 10 10 H 1.48499 * 109.46764 * 60.00663 * 9 7 5 11 11 H 1.48501 * 109.46697 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46908 * 300.00406 * 9 7 5 13 13 C 1.50701 * 109.46864 * 83.57826 * 3 2 1 14 14 C 1.38264 * 119.98408 * 46.14018 * 13 3 2 15 15 C 1.38205 * 120.03849 * 179.72330 * 14 13 3 16 16 C 1.38346 * 119.99622 * 0.54871 * 15 14 13 17 17 Cl 1.73599 * 120.01553 * 179.74785 * 16 15 14 18 18 C 1.38437 * 119.96422 * 359.72870 * 16 15 14 19 19 Cl 1.73601 * 120.01731 * 180.02562 * 18 16 15 20 20 C 1.38207 * 119.97658 * 226.41216 * 13 3 2 21 21 H 1.08999 * 109.47050 * 64.62590 * 1 2 3 22 22 H 1.09000 * 109.46760 * 184.62964 * 1 2 3 23 23 H 1.09001 * 109.46699 * 304.62423 * 1 2 3 24 24 H 1.00897 * 111.00172 * 123.95357 * 2 1 3 25 25 H 0.96999 * 120.00195 * 180.02562 * 8 7 5 26 26 H 1.08005 * 119.97740 * 359.97438 * 14 13 3 27 27 H 1.07994 * 119.99763 * 180.25783 * 15 14 13 28 28 H 1.07998 * 120.00497 * 0.02564 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3536 2.0070 -0.6102 5 6 3.3911 1.3738 -0.5683 6 1 4.2184 1.7213 0.0327 7 6 3.6128 0.9269 -1.8537 8 7 2.6055 0.5037 -2.5857 9 14 5.3441 0.9226 -2.5555 10 1 6.2148 0.0574 -1.7197 11 1 5.3134 0.3998 -3.9451 12 1 5.8798 2.3075 -2.5597 13 6 2.0271 1.8974 1.4119 14 6 2.5335 1.1116 2.4307 15 6 2.5683 1.5949 3.7251 16 6 2.0859 2.8613 4.0037 17 17 2.1234 3.4663 5.6304 18 6 1.5736 3.6458 2.9846 19 17 0.9685 5.2353 3.3326 20 6 1.5448 3.1626 1.6885 21 1 -0.3633 0.4404 -0.9285 22 1 -0.3633 -1.0243 0.0829 23 1 -0.3633 0.5839 0.8457 24 1 1.8306 -0.5261 0.7813 25 1 2.7615 0.1889 -3.4898 26 1 2.9057 0.1212 2.2142 27 1 2.9678 0.9823 4.5196 28 1 1.1450 3.7740 0.8931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259452574.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:03 Heat of formation + Delta-G solvation = -4.027797 kcal Electronic energy + Delta-G solvation = -14851.022309 eV Core-core repulsion = 12145.833105 eV Total energy + Delta-G solvation = -2705.189203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63485 -37.96432 -37.51344 -36.58684 -34.05139 -32.13883 -31.62328 -28.70465 -25.67596 -24.53749 -23.70415 -21.77429 -18.57480 -18.39033 -16.88490 -16.75552 -16.27843 -15.90828 -15.15335 -14.83168 -14.73082 -14.54753 -13.87595 -13.55179 -13.25372 -12.88979 -12.83305 -12.76188 -12.53261 -12.28299 -12.25783 -12.07510 -11.84750 -11.56724 -11.18404 -10.48802 -9.90421 -9.50921 -8.71568 -7.94966 -6.15203 0.02870 0.17635 0.83197 1.19278 1.48626 1.49445 1.55896 2.45433 2.59839 3.26727 3.68491 3.96695 4.08080 4.25915 4.30928 4.40251 4.67860 4.75572 4.78680 4.98434 5.10284 5.16219 5.20019 5.62511 5.68605 5.81761 6.19519 6.62507 6.96639 7.17304 7.56769 9.08094 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.005940 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.934964 B = 4712.780920 C = 4846.439508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.668 5.668 3 C 0.259 3.741 4 H 0.014 0.986 5 C -0.537 4.537 6 H 0.050 0.950 7 C 0.043 3.957 8 N -0.879 5.879 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.276 1.276 13 C -0.070 4.070 14 C -0.103 4.103 15 C -0.089 4.089 16 C -0.053 4.053 17 Cl -0.051 7.051 18 C -0.032 4.032 19 Cl -0.055 7.055 20 C -0.112 4.112 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.008 0.992 24 H 0.324 0.676 25 H 0.255 0.745 26 H 0.144 0.856 27 H 0.167 0.833 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 3.081 12.937 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.298 5.298 3 C 0.151 3.849 4 H 0.032 0.968 5 C -0.576 4.576 6 H 0.068 0.932 7 C -0.162 4.162 8 N -0.515 5.515 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.072 4.072 14 C -0.122 4.122 15 C -0.107 4.107 16 C -0.080 4.080 17 Cl -0.022 7.022 18 C -0.059 4.059 19 Cl -0.026 7.026 20 C -0.131 4.131 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.026 0.974 24 H 0.143 0.857 25 H 0.064 0.936 26 H 0.161 0.839 27 H 0.184 0.816 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.322 3.119 12.234 12.837 hybrid contribution 0.493 0.556 0.245 0.782 sum -1.829 3.674 12.479 13.137 Atomic orbital electron populations 1.22029 0.89876 1.00456 0.98433 1.60780 1.05544 1.15289 1.48192 1.18061 0.95115 0.86160 0.85561 0.96787 1.21077 0.92734 1.45031 0.98736 0.93203 1.25556 0.99344 0.94045 0.97208 1.70167 1.31745 1.40802 1.08778 0.85869 0.81546 0.78234 0.77322 1.19685 1.21400 1.20181 1.21405 0.93437 0.93508 0.98888 1.21179 0.98531 1.01098 0.91388 1.21232 0.98558 0.93198 0.97716 1.20750 1.05675 0.95658 0.85958 1.98351 1.97249 1.87819 1.18800 1.20791 1.03008 0.88265 0.93860 1.98349 1.86220 1.22859 1.95173 1.21002 1.01361 0.96420 0.94343 0.94335 0.91486 0.97396 0.85704 0.93557 0.83882 0.81599 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 10.49 127.69 1.34 2.95 15 2 N -0.67 -29.25 5.88 -522.47 -3.07 -32.33 15 3 C 0.26 12.02 2.09 43.42 0.09 12.11 15 4 H 0.01 0.74 7.67 -2.39 -0.02 0.72 15 5 C -0.54 -27.84 8.67 25.60 0.22 -27.61 15 6 H 0.05 2.57 7.74 -2.91 -0.02 2.55 15 7 C 0.04 2.26 5.39 84.65 0.46 2.72 15 8 N -0.88 -49.31 12.76 21.45 0.27 -49.03 15 9 Si 0.94 42.27 29.54 68.60 2.03 44.29 15 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 15 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 13 C -0.07 -2.67 4.52 -19.86 -0.09 -2.76 15 14 C -0.10 -3.36 8.98 22.27 0.20 -3.16 15 15 C -0.09 -2.42 9.83 22.29 0.22 -2.20 15 16 C -0.05 -1.52 6.32 22.34 0.14 -1.38 15 17 Cl -0.05 -1.27 27.96 -2.72 -0.08 -1.34 15 18 C -0.03 -1.00 6.32 22.34 0.14 -0.86 15 19 Cl -0.05 -1.55 27.96 -2.72 -0.08 -1.63 15 20 C -0.11 -3.99 9.45 22.29 0.21 -3.77 15 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.01 0.27 7.87 -2.39 -0.02 0.26 15 24 H 0.32 12.75 6.76 -89.70 -0.61 12.14 15 25 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 26 H 0.14 4.42 6.86 -2.91 -0.02 4.40 15 27 H 0.17 3.45 8.06 -2.91 -0.02 3.42 15 28 H 0.13 4.70 7.99 -2.91 -0.02 4.67 15 Total: -1.00 -56.33 275.02 2.58 -53.75 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.58 Total: 10.27 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 2.93 Total: -23.98 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.80 Total: -81.36 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.15 Total: -2.97 kcal Total: -56.33 2.58 -53.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259452574.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.720 kcal (2) G-P(sol) polarization free energy of solvation -56.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds