Wall clock time and date at job start Mon Mar 30 2020 07:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34499 * 125.77654 * 2 1 4 4 C 1.41400 * 106.84470 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.58100 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46937 * 145.00675 * 5 4 3 7 7 N 1.46902 * 109.47257 * 25.00677 * 5 4 3 8 8 C 1.50701 * 109.47657 * 265.00478 * 5 4 3 9 9 H 1.08002 * 119.99449 * 0.02562 * 8 5 4 10 10 C 1.37876 * 120.00390 * 180.02562 * 8 5 4 11 11 N 1.31507 * 119.99967 * 180.02562 * 10 8 5 12 12 Si 1.86793 * 119.99755 * 359.97438 * 10 8 5 13 13 H 1.48502 * 109.47414 * 90.00049 * 12 10 8 14 14 H 1.48501 * 109.47247 * 210.00037 * 12 10 8 15 15 H 1.48503 * 109.47368 * 330.00189 * 12 10 8 16 16 C 1.34615 * 106.83428 * 0.02562 * 4 3 2 17 17 Br 1.89100 * 125.79981 * 179.97438 * 16 4 3 18 18 O 1.34302 * 108.40349 * 359.73552 * 16 4 3 19 19 H 1.09001 * 109.46953 * 89.99881 * 1 2 3 20 20 H 1.09000 * 109.47318 * 209.99479 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.00109 * 1 2 3 22 22 H 1.07997 * 126.57815 * 359.97438 * 3 2 1 23 23 H 1.00901 * 110.99457 * 299.99841 * 7 5 4 24 24 H 1.00901 * 110.99926 * 63.95152 * 7 5 4 25 25 H 0.96997 * 120.00385 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2934 1.0912 0.0000 4 6 3.6309 0.6324 0.0006 5 6 4.8730 1.4857 0.0003 6 1 5.6491 0.9979 0.5902 7 7 4.5659 2.7980 0.5848 8 6 5.3576 1.6673 -1.4151 9 1 4.8195 1.2108 -2.2327 10 6 6.4877 2.4162 -1.6663 11 7 6.9101 2.5750 -2.9015 12 14 7.4178 3.2063 -0.2522 13 1 8.4536 2.2659 0.2459 14 1 8.0686 4.4549 -0.7240 15 1 6.4707 3.5262 0.8460 16 6 3.5816 -0.7128 0.0004 17 35 5.0738 -1.8744 0.0002 18 8 2.2926 -1.0899 0.0055 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3633 0.8900 0.5138 22 1 1.9660 2.1204 -0.0004 23 1 3.8486 3.2706 0.0554 24 1 4.3004 2.7088 1.5542 25 1 7.7053 3.1015 -3.0782 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259588649.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:22 Heat of formation + Delta-G solvation = 24.369279 kcal Electronic energy + Delta-G solvation = -12290.632336 eV Core-core repulsion = 9931.537672 eV Total energy + Delta-G solvation = -2359.094664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.995 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.16934 -35.50589 -32.59360 -32.05084 -31.19704 -30.02123 -26.71872 -25.32589 -22.49369 -20.53185 -18.91023 -16.85335 -16.49057 -15.84100 -14.69331 -14.22258 -13.80234 -13.29882 -13.00784 -12.94232 -12.65118 -12.11439 -11.96515 -11.20796 -10.86517 -10.68629 -10.37812 -10.11674 -9.93256 -9.36002 -8.88949 -8.48706 -7.74958 -7.25381 -5.95385 -4.04685 1.48176 1.95664 3.04181 3.54753 3.64475 3.75137 3.95631 4.74827 5.01855 5.30693 5.41368 5.44853 5.47420 5.71659 5.93066 6.02733 6.29241 6.34823 6.88752 6.97038 7.36317 7.64506 8.18613 8.35704 8.72692 9.04735 9.68535 11.14535 Molecular weight = 258.99amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.010762 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.173828 B = 2601.177765 C = 3403.343321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.010 4.010 3 C -0.205 4.205 4 C -0.099 4.099 5 C 0.242 3.758 6 H 0.052 0.948 7 N -0.830 5.830 8 C -0.512 4.512 9 H 0.068 0.932 10 C 0.087 3.913 11 N -0.900 5.900 12 Si 0.862 3.138 13 H -0.296 1.296 14 H -0.304 1.304 15 H -0.192 1.192 16 C -0.051 4.051 17 Br 0.043 6.957 18 O -0.173 6.173 19 H 0.080 0.920 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.148 0.852 23 H 0.330 0.670 24 H 0.308 0.692 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 -6.838 8.319 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 C -0.225 4.225 4 C -0.105 4.105 5 C 0.132 3.868 6 H 0.069 0.931 7 N -0.359 5.359 8 C -0.550 4.550 9 H 0.086 0.914 10 C -0.117 4.117 11 N -0.537 5.537 12 Si 0.689 3.311 13 H -0.223 1.223 14 H -0.231 1.231 15 H -0.114 1.114 16 C -0.178 4.178 17 Br 0.126 6.874 18 O -0.071 6.071 19 H 0.098 0.902 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.165 0.835 23 H 0.143 0.857 24 H 0.119 0.881 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.222 -7.296 8.058 13.629 hybrid contribution -0.610 0.300 0.417 0.797 sum -8.832 -6.996 8.475 14.099 Atomic orbital electron populations 1.20258 0.85187 1.03620 1.03386 1.22392 0.93692 0.84354 1.05757 1.21404 0.92077 0.99272 1.09727 1.21867 0.98200 0.92357 0.98105 1.18181 0.87416 0.83861 0.97344 0.93080 1.60062 1.48861 1.22374 1.04585 1.20598 1.11182 1.33780 0.89441 0.91376 1.24924 0.96428 0.94516 0.95828 1.69948 1.24090 1.39797 1.19836 0.87270 0.79328 0.78045 0.86491 1.22323 1.23141 1.11360 1.23424 0.82546 0.93481 1.18303 1.96723 1.29505 1.63126 1.98001 1.83938 1.15374 1.34874 1.72956 0.90178 0.90870 0.89477 0.83466 0.85658 0.88139 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 36.01 0.38 -0.35 15 2 C -0.01 -0.16 7.32 -35.63 -0.26 -0.42 15 3 C -0.20 -3.65 10.07 -39.70 -0.40 -4.05 15 4 C -0.10 -2.08 5.19 -104.70 -0.54 -2.62 15 5 C 0.24 5.59 2.32 -70.01 -0.16 5.42 15 6 H 0.05 1.23 7.37 -51.93 -0.38 0.85 15 7 N -0.83 -17.04 5.61 -6.65 -0.04 -17.08 15 8 C -0.51 -14.33 9.29 -34.44 -0.32 -14.65 15 9 H 0.07 2.14 7.98 -52.49 -0.42 1.72 15 10 C 0.09 2.53 5.47 -17.82 -0.10 2.43 15 11 N -0.90 -27.95 13.96 55.43 0.77 -27.17 15 12 Si 0.86 21.67 26.94 -169.99 -4.58 17.09 15 13 H -0.30 -7.56 7.11 56.52 0.40 -7.16 15 14 H -0.30 -7.86 7.11 56.52 0.40 -7.45 15 15 H -0.19 -4.44 5.17 56.52 0.29 -4.14 15 16 C -0.05 -1.02 7.80 29.45 0.23 -0.80 15 17 Br 0.04 0.79 33.62 -68.01 -2.29 -1.50 15 18 O -0.17 -3.23 10.65 5.58 0.06 -3.17 15 19 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.09 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.15 2.30 7.55 -52.49 -0.40 1.91 15 23 H 0.33 6.50 8.11 -39.29 -0.32 6.18 15 24 H 0.31 5.46 9.06 -39.29 -0.36 5.10 15 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 LS Contribution 240.85 15.07 3.63 3.63 Total: -1.00 -31.92 240.85 -6.00 -37.93 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -2.39 Total: 5.31 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.18 Total: -15.03 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.74 Total: -44.25 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: 0.06 Total: -3.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.58 Total: 17.09 kcal Atomic # 35 Polarization: 0.79 SS G_CDS: -2.29 Total: -1.50 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.92 -6.00 -37.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588649.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.295 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds