Wall clock time and date at job start Mon Mar 30 2020 07:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34499 * 125.77654 * 2 1 4 4 C 1.41400 * 106.84470 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.58100 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46937 * 145.00675 * 5 4 3 7 7 N 1.46902 * 109.47257 * 25.00677 * 5 4 3 8 8 C 1.50701 * 109.47657 * 265.00478 * 5 4 3 9 9 H 1.08002 * 119.99449 * 0.02562 * 8 5 4 10 10 C 1.37876 * 120.00390 * 180.02562 * 8 5 4 11 11 N 1.31507 * 119.99967 * 180.02562 * 10 8 5 12 12 Si 1.86793 * 119.99755 * 359.97438 * 10 8 5 13 13 H 1.48502 * 109.47414 * 90.00049 * 12 10 8 14 14 H 1.48501 * 109.47247 * 210.00037 * 12 10 8 15 15 H 1.48503 * 109.47368 * 330.00189 * 12 10 8 16 16 C 1.34615 * 106.83428 * 0.02562 * 4 3 2 17 17 Br 1.89100 * 125.79981 * 179.97438 * 16 4 3 18 18 O 1.34302 * 108.40349 * 359.73552 * 16 4 3 19 19 H 1.09001 * 109.46953 * 89.99881 * 1 2 3 20 20 H 1.09000 * 109.47318 * 209.99479 * 1 2 3 21 21 H 1.09000 * 109.47161 * 330.00109 * 1 2 3 22 22 H 1.07997 * 126.57815 * 359.97438 * 3 2 1 23 23 H 1.00901 * 110.99457 * 299.99841 * 7 5 4 24 24 H 1.00901 * 110.99926 * 63.95152 * 7 5 4 25 25 H 0.96997 * 120.00385 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2934 1.0912 0.0000 4 6 3.6309 0.6324 0.0006 5 6 4.8730 1.4857 0.0003 6 1 5.6491 0.9979 0.5902 7 7 4.5659 2.7980 0.5848 8 6 5.3576 1.6673 -1.4151 9 1 4.8195 1.2108 -2.2327 10 6 6.4877 2.4162 -1.6663 11 7 6.9101 2.5750 -2.9015 12 14 7.4178 3.2063 -0.2522 13 1 8.4536 2.2659 0.2459 14 1 8.0686 4.4549 -0.7240 15 1 6.4707 3.5262 0.8460 16 6 3.5816 -0.7128 0.0004 17 35 5.0738 -1.8744 0.0002 18 8 2.2926 -1.0899 0.0055 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5137 21 1 -0.3633 0.8900 0.5138 22 1 1.9660 2.1204 -0.0004 23 1 3.8486 3.2706 0.0554 24 1 4.3004 2.7088 1.5542 25 1 7.7053 3.1015 -3.0782 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259588649.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:22 Heat of formation + Delta-G solvation = 1.441805 kcal Electronic energy + Delta-G solvation = -12291.626546 eV Core-core repulsion = 9931.537672 eV Total energy + Delta-G solvation = -2360.088874 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.995 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.59024 -37.26345 -34.24923 -33.68279 -32.83695 -31.37188 -28.53702 -26.77622 -24.28213 -21.98790 -20.46631 -18.94317 -17.94009 -17.30224 -16.56432 -16.04430 -15.36261 -14.69953 -14.60289 -14.10188 -13.85112 -13.79424 -13.36005 -12.90823 -12.56196 -12.53421 -12.08456 -11.89274 -11.51845 -11.43128 -10.71499 -10.45627 -9.20473 -8.97169 -8.19710 -6.32114 0.01547 0.55315 1.53954 1.57347 1.60400 1.96376 2.44712 2.64111 3.18305 3.84507 3.95525 4.23385 4.52815 4.56449 4.69779 4.71875 4.84745 5.09477 5.22536 5.48608 5.61031 5.97768 6.17833 6.50651 6.80096 7.04656 7.44586 8.93901 Molecular weight = 258.99amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.010762 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.173828 B = 2601.177765 C = 3403.343321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.006 3.994 3 C -0.223 4.223 4 C -0.124 4.124 5 C 0.253 3.747 6 H 0.044 0.956 7 N -0.830 5.830 8 C -0.504 4.504 9 H 0.020 0.980 10 C 0.030 3.970 11 N -0.951 5.951 12 Si 0.922 3.078 13 H -0.301 1.301 14 H -0.314 1.314 15 H -0.154 1.154 16 C -0.072 4.072 17 Br 0.046 6.954 18 O -0.179 6.179 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.114 0.886 22 H 0.169 0.831 23 H 0.338 0.662 24 H 0.331 0.669 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 -6.415 10.276 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C -0.243 4.243 4 C -0.130 4.130 5 C 0.142 3.858 6 H 0.062 0.938 7 N -0.360 5.360 8 C -0.542 4.542 9 H 0.038 0.962 10 C -0.169 4.169 11 N -0.591 5.591 12 Si 0.747 3.253 13 H -0.229 1.229 14 H -0.242 1.242 15 H -0.074 1.074 16 C -0.199 4.199 17 Br 0.130 6.870 18 O -0.078 6.078 19 H 0.113 0.887 20 H 0.109 0.891 21 H 0.133 0.867 22 H 0.186 0.814 23 H 0.152 0.848 24 H 0.144 0.856 25 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.015 -6.883 10.038 15.762 hybrid contribution -0.193 0.092 -0.245 0.325 sum -10.208 -6.791 9.793 15.691 Atomic orbital electron populations 1.20567 0.80931 1.05878 1.04958 1.23446 0.95783 0.83109 1.02239 1.21649 0.90837 1.00898 1.10933 1.21796 0.98807 0.92672 0.99708 1.17749 0.88416 0.85385 0.94225 0.93789 1.59703 1.49595 1.20679 1.06067 1.20735 1.10390 1.32180 0.90886 0.96192 1.25812 0.97583 0.95397 0.98079 1.70093 1.25064 1.41670 1.22252 0.86421 0.78201 0.76299 0.84395 1.22888 1.24226 1.07394 1.23569 0.83484 0.93688 1.19163 1.96697 1.29522 1.62798 1.98022 1.83962 1.14920 1.35969 1.72908 0.88722 0.89124 0.86714 0.81400 0.84817 0.85569 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.42 71.24 0.74 -0.40 15 2 C 0.01 0.18 7.32 24.83 0.18 0.36 15 3 C -0.22 -7.46 10.07 22.19 0.22 -7.23 15 4 C -0.12 -5.06 5.19 -19.92 -0.10 -5.16 15 5 C 0.25 11.43 2.32 43.42 0.10 11.53 15 6 H 0.04 2.07 7.37 -2.39 -0.02 2.05 15 7 N -0.83 -31.82 5.61 -174.94 -0.98 -32.80 15 8 C -0.50 -28.59 9.29 25.60 0.24 -28.35 15 9 H 0.02 1.29 7.98 -2.91 -0.02 1.27 15 10 C 0.03 1.74 5.47 84.66 0.46 2.21 15 11 N -0.95 -60.76 13.96 21.45 0.30 -60.46 15 12 Si 0.92 44.58 26.94 68.60 1.85 46.43 15 13 H -0.30 -14.75 7.11 99.48 0.71 -14.04 15 14 H -0.31 -15.64 7.11 99.48 0.71 -14.93 15 15 H -0.15 -6.46 5.17 99.48 0.51 -5.95 15 16 C -0.07 -2.87 7.80 66.99 0.52 -2.35 15 17 Br 0.05 1.70 33.62 -20.37 -0.68 1.01 15 18 O -0.18 -6.40 10.65 -2.94 -0.03 -6.43 15 19 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.09 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.11 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.17 4.73 7.55 -2.91 -0.02 4.71 15 23 H 0.34 12.41 8.11 -89.69 -0.73 11.68 15 24 H 0.33 10.53 9.06 -89.69 -0.81 9.72 15 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 15 Total: -1.00 -70.33 240.85 2.31 -68.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.50 Total: 13.63 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 2.37 Total: -29.40 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -0.68 Total: -93.27 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.03 Total: -6.43 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.85 Total: 46.43 kcal Atomic # 35 Polarization: 1.70 SS G_CDS: -0.68 Total: 1.01 kcal Total: -70.33 2.31 -68.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588649.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.461 kcal (2) G-P(sol) polarization free energy of solvation -70.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds