Wall clock time and date at job start Mon Mar 30 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47241 * 119.99763 * 2 1 3 5 5 H 1.08998 * 109.47168 * 202.03207 * 4 2 1 6 6 C 1.50694 * 109.46991 * 82.02839 * 4 2 1 7 7 H 1.08003 * 120.00149 * 245.59416 * 6 4 2 8 8 C 1.37874 * 120.00141 * 65.60155 * 6 4 2 9 9 N 1.31510 * 119.99949 * 6.43682 * 8 6 4 10 10 Si 1.86804 * 120.00146 * 186.44200 * 8 6 4 11 11 H 1.48505 * 109.47195 * 59.99707 * 10 8 6 12 12 H 1.48498 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46962 * 299.99583 * 10 8 6 14 14 C 1.53002 * 109.46767 * 322.03183 * 4 2 1 15 15 H 1.08995 * 109.48275 * 57.46828 * 14 4 2 16 16 C 1.51593 * 109.47749 * 177.50491 * 14 4 2 17 17 C 1.53183 * 106.79834 * 222.68208 * 16 14 4 18 18 C 1.45389 * 115.33817 * 268.30392 * 17 16 14 19 19 S 1.83628 * 109.69071 * 64.73265 * 18 17 16 20 20 O 1.42099 * 109.46859 * 174.75941 * 19 18 17 21 21 C 1.79970 * 102.85000 * 291.06892 * 19 18 17 22 22 C 1.52989 * 109.48016 * 297.44786 * 14 4 2 23 23 H 1.08999 * 109.47441 * 308.51059 * 1 2 3 24 24 H 1.08995 * 109.47216 * 188.50769 * 1 2 3 25 25 H 1.09006 * 109.46746 * 68.50773 * 1 2 3 26 26 H 1.09001 * 109.47303 * 240.00134 * 2 1 3 27 27 H 1.09002 * 109.47477 * 53.93745 * 3 2 1 28 28 H 1.09000 * 109.47475 * 173.93763 * 3 2 1 29 29 H 1.08998 * 109.46992 * 293.93792 * 3 2 1 30 30 H 0.97001 * 120.00444 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.98766 * 342.00707 * 16 14 4 32 32 H 1.09003 * 109.98589 * 103.36677 * 16 14 4 33 33 H 1.08997 * 108.30568 * 146.78068 * 17 16 14 34 34 H 1.09002 * 108.15903 * 29.71556 * 17 16 14 35 35 H 1.08999 * 109.43409 * 304.66213 * 18 17 16 36 36 H 1.08995 * 109.42930 * 184.79767 * 18 17 16 37 37 H 1.08998 * 108.75515 * 325.76139 * 21 19 18 38 38 H 1.09005 * 108.65800 * 207.57445 * 21 19 18 39 39 H 1.09000 * 108.27348 * 319.77813 * 22 14 4 40 40 H 1.08997 * 108.27164 * 76.83607 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0592 -0.3999 1.4637 6 6 2.0217 -2.2094 1.0128 7 1 1.3582 -2.8393 1.5868 8 6 2.8521 -2.7669 0.0638 9 7 3.7484 -2.0217 -0.5450 10 14 2.7039 -4.5808 -0.3572 11 1 1.3375 -4.8606 -0.8672 12 1 3.7020 -4.9301 -1.3997 13 1 2.9539 -5.3935 0.8602 14 6 1.1378 -0.3825 2.4377 15 1 0.1104 -0.6628 2.2056 16 6 1.6061 -1.1450 3.6613 17 6 0.3504 -1.6777 4.3584 18 6 -0.2086 -0.8097 5.3821 19 16 -0.8050 0.7481 4.6143 20 8 -1.4586 1.5401 5.5965 21 6 0.7221 1.5564 4.1109 22 6 1.2057 1.1200 2.7179 23 1 -0.3634 0.6399 0.8041 24 1 -0.3633 -1.0163 0.1520 25 1 -0.3633 0.3765 -0.9563 26 1 1.8933 -0.5138 -0.8900 27 1 1.5908 1.9868 0.8307 28 1 3.1246 1.4445 0.1085 29 1 1.7680 1.9240 -0.9393 30 1 4.3324 -2.4138 -1.2129 31 1 2.2459 -1.9748 3.3609 32 1 2.1491 -0.4779 4.3308 33 1 0.5940 -2.6358 4.8174 34 1 -0.4132 -1.8479 3.5993 35 1 0.5590 -0.5793 6.1209 36 1 -1.0414 -1.3152 5.8709 37 1 1.4984 1.3242 4.8399 38 1 0.5601 2.6343 4.1036 39 1 2.2397 1.4436 2.5981 40 1 0.6000 1.6344 1.9720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:52 Heat of formation + Delta-G solvation = -55.234516 kcal Electronic energy + Delta-G solvation = -18937.172711 eV Core-core repulsion = 16264.022754 eV Total energy + Delta-G solvation = -2673.149957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.54158 -35.53495 -34.84084 -32.61106 -31.71877 -29.58619 -26.41169 -26.22848 -24.85878 -22.70366 -21.40081 -19.53314 -18.37986 -17.00355 -16.24002 -15.49887 -15.29078 -14.72781 -14.50119 -14.12081 -13.63761 -13.45005 -13.01398 -12.73428 -12.57893 -12.23088 -12.17118 -11.56290 -11.40401 -11.26608 -11.03199 -10.92209 -10.64952 -10.61698 -10.43036 -10.18714 -10.01083 -10.00344 -9.59415 -9.51383 -9.26273 -8.73782 -8.57699 -8.26923 -7.91509 -5.98560 -3.99992 1.70774 2.76694 3.31937 3.37909 3.40301 4.01000 4.45149 4.94150 5.09728 5.33256 5.34043 5.39490 5.53069 5.59577 5.86995 6.02446 6.06076 6.19389 6.23573 6.27522 6.29824 6.35642 6.46181 6.49463 6.64562 6.70356 6.74055 6.86116 6.97563 7.04241 7.09161 7.25322 7.35934 7.59018 7.80878 8.01917 8.06537 8.48939 9.04494 9.63059 11.09698 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.007314 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.480090 B = 3827.289110 C = 4480.114080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.157 4.157 4 C 0.063 3.937 5 H 0.032 0.968 6 C -0.507 4.507 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.887 5.887 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.279 1.279 14 C -0.089 4.089 15 H 0.075 0.925 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.411 4.411 19 S 1.219 4.781 20 O -0.875 6.875 21 C -0.437 4.437 22 C -0.091 4.091 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.259 0.741 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 3.106 4.294 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.214 4.214 4 C 0.044 3.956 5 H 0.050 0.950 6 C -0.545 4.545 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.205 1.205 14 C -0.108 4.108 15 H 0.093 0.907 16 C -0.159 4.159 17 C -0.142 4.142 18 C -0.548 4.548 19 S 1.419 4.581 20 O -0.870 6.870 21 C -0.576 4.576 22 C -0.129 4.129 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.058 3.450 4.075 8.850 hybrid contribution 1.559 -0.556 1.477 2.219 sum -5.499 2.894 5.552 8.333 Atomic orbital electron populations 1.21956 0.97988 1.01181 0.98828 1.21129 0.93019 0.93365 1.02915 1.22291 1.00885 0.98660 0.99571 1.18802 0.93863 0.94751 0.88139 0.94977 1.21130 1.21446 0.92199 1.19735 0.92416 1.24924 0.95162 0.97068 0.96632 1.69950 1.20228 1.35609 1.26802 0.86856 0.77772 0.86426 0.78099 1.20312 1.21632 1.20498 1.21462 1.01526 0.91035 0.96751 0.90673 1.21715 0.96497 1.01418 0.96233 1.19967 0.98974 0.98221 0.97069 1.26254 1.07294 1.14562 1.06706 1.70580 0.89838 0.88810 1.08873 1.93013 1.62439 1.67059 1.64490 1.27597 1.15645 1.08672 1.05645 1.21792 1.01556 0.98696 0.90844 0.93701 0.92352 0.95427 0.90156 0.92776 0.93499 0.95332 0.93147 0.88623 0.93499 0.92429 0.90700 0.90382 0.88037 0.89688 0.88649 0.91606 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.82 37.16 0.29 -2.12 16 2 C -0.09 -1.71 2.48 -90.62 -0.22 -1.93 16 3 C -0.16 -2.81 8.43 37.16 0.31 -2.50 16 4 C 0.06 1.31 1.06 -91.77 -0.10 1.22 16 5 H 0.03 0.77 7.73 -51.93 -0.40 0.37 16 6 C -0.51 -12.01 6.82 -34.44 -0.23 -12.24 16 7 H 0.06 1.33 7.34 -52.48 -0.39 0.95 16 8 C 0.06 1.61 5.03 -17.82 -0.09 1.52 16 9 N -0.89 -23.81 12.20 55.43 0.68 -23.14 16 10 Si 0.88 19.95 29.54 -169.99 -5.02 14.93 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C -0.09 -1.46 0.84 -91.34 -0.08 -1.53 16 15 H 0.08 1.13 4.94 -51.93 -0.26 0.87 16 16 C -0.12 -1.93 4.87 -27.35 -0.13 -2.06 16 17 C -0.10 -1.39 5.00 -30.22 -0.15 -1.54 16 18 C -0.41 -5.19 6.05 33.58 0.20 -4.99 16 19 S 1.22 16.11 12.98 -107.50 -1.40 14.71 16 20 O -0.87 -16.44 18.14 -35.23 -0.64 -17.08 16 21 C -0.44 -5.89 5.57 37.56 0.21 -5.68 16 22 C -0.09 -1.32 3.30 -26.33 -0.09 -1.40 16 23 H 0.04 0.64 5.22 -51.93 -0.27 0.37 16 24 H 0.06 1.02 7.63 -51.93 -0.40 0.62 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.93 6.59 -51.93 -0.34 1.59 16 27 H 0.05 0.84 4.20 -51.93 -0.22 0.62 16 28 H 0.05 0.90 8.00 -51.93 -0.42 0.49 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.10 1.78 6.41 -51.93 -0.33 1.44 16 32 H 0.05 0.71 6.24 -51.93 -0.32 0.39 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 34 H 0.07 0.92 6.98 -51.93 -0.36 0.56 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.16 7.07 -51.70 -0.37 0.80 16 38 H 0.09 1.25 8.14 -51.67 -0.42 0.83 16 39 H 0.07 1.03 7.17 -51.93 -0.37 0.66 16 40 H 0.07 0.99 4.38 -51.93 -0.23 0.76 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -29.59 298.45 -8.30 -37.89 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.34 Total: 1.44 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: -0.08 Total: -33.26 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.68 Total: -23.14 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.64 Total: -17.08 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 16.11 SS G_CDS: -1.40 Total: 14.71 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.59 -8.30 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.342 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds