Wall clock time and date at job start Mon Mar 30 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47241 * 119.99763 * 2 1 3 5 5 H 1.08998 * 109.47168 * 202.03207 * 4 2 1 6 6 C 1.50694 * 109.46991 * 82.02839 * 4 2 1 7 7 H 1.08003 * 120.00149 * 245.59416 * 6 4 2 8 8 C 1.37874 * 120.00141 * 65.60155 * 6 4 2 9 9 N 1.31510 * 119.99949 * 6.43682 * 8 6 4 10 10 Si 1.86804 * 120.00146 * 186.44200 * 8 6 4 11 11 H 1.48505 * 109.47195 * 59.99707 * 10 8 6 12 12 H 1.48498 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46962 * 299.99583 * 10 8 6 14 14 C 1.53002 * 109.46767 * 322.03183 * 4 2 1 15 15 H 1.08995 * 109.48275 * 57.46828 * 14 4 2 16 16 C 1.51593 * 109.47749 * 177.50491 * 14 4 2 17 17 C 1.53183 * 106.79834 * 222.68208 * 16 14 4 18 18 C 1.45389 * 115.33817 * 268.30392 * 17 16 14 19 19 S 1.83628 * 109.69071 * 64.73265 * 18 17 16 20 20 O 1.42099 * 109.46859 * 174.75941 * 19 18 17 21 21 C 1.79970 * 102.85000 * 291.06892 * 19 18 17 22 22 C 1.52989 * 109.48016 * 297.44786 * 14 4 2 23 23 H 1.08999 * 109.47441 * 308.51059 * 1 2 3 24 24 H 1.08995 * 109.47216 * 188.50769 * 1 2 3 25 25 H 1.09006 * 109.46746 * 68.50773 * 1 2 3 26 26 H 1.09001 * 109.47303 * 240.00134 * 2 1 3 27 27 H 1.09002 * 109.47477 * 53.93745 * 3 2 1 28 28 H 1.09000 * 109.47475 * 173.93763 * 3 2 1 29 29 H 1.08998 * 109.46992 * 293.93792 * 3 2 1 30 30 H 0.97001 * 120.00444 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.98766 * 342.00707 * 16 14 4 32 32 H 1.09003 * 109.98589 * 103.36677 * 16 14 4 33 33 H 1.08997 * 108.30568 * 146.78068 * 17 16 14 34 34 H 1.09002 * 108.15903 * 29.71556 * 17 16 14 35 35 H 1.08999 * 109.43409 * 304.66213 * 18 17 16 36 36 H 1.08995 * 109.42930 * 184.79767 * 18 17 16 37 37 H 1.08998 * 108.75515 * 325.76139 * 21 19 18 38 38 H 1.09005 * 108.65800 * 207.57445 * 21 19 18 39 39 H 1.09000 * 108.27348 * 319.77813 * 22 14 4 40 40 H 1.08997 * 108.27164 * 76.83607 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0592 -0.3999 1.4637 6 6 2.0217 -2.2094 1.0128 7 1 1.3582 -2.8393 1.5868 8 6 2.8521 -2.7669 0.0638 9 7 3.7484 -2.0217 -0.5450 10 14 2.7039 -4.5808 -0.3572 11 1 1.3375 -4.8606 -0.8672 12 1 3.7020 -4.9301 -1.3997 13 1 2.9539 -5.3935 0.8602 14 6 1.1378 -0.3825 2.4377 15 1 0.1104 -0.6628 2.2056 16 6 1.6061 -1.1450 3.6613 17 6 0.3504 -1.6777 4.3584 18 6 -0.2086 -0.8097 5.3821 19 16 -0.8050 0.7481 4.6143 20 8 -1.4586 1.5401 5.5965 21 6 0.7221 1.5564 4.1109 22 6 1.2057 1.1200 2.7179 23 1 -0.3634 0.6399 0.8041 24 1 -0.3633 -1.0163 0.1520 25 1 -0.3633 0.3765 -0.9563 26 1 1.8933 -0.5138 -0.8900 27 1 1.5908 1.9868 0.8307 28 1 3.1246 1.4445 0.1085 29 1 1.7680 1.9240 -0.9393 30 1 4.3324 -2.4138 -1.2129 31 1 2.2459 -1.9748 3.3609 32 1 2.1491 -0.4779 4.3308 33 1 0.5940 -2.6358 4.8174 34 1 -0.4132 -1.8479 3.5993 35 1 0.5590 -0.5793 6.1209 36 1 -1.0414 -1.3152 5.8709 37 1 1.4984 1.3242 4.8399 38 1 0.5601 2.6343 4.1036 39 1 2.2397 1.4436 2.5981 40 1 0.6000 1.6344 1.9720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:48 Heat of formation + Delta-G solvation = -73.148893 kcal Electronic energy + Delta-G solvation = -18937.949537 eV Core-core repulsion = 16264.022754 eV Total energy + Delta-G solvation = -2673.926783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.94620 -36.84989 -36.16227 -34.26839 -33.11364 -30.98895 -27.95986 -27.65933 -26.18111 -24.29777 -22.58562 -20.87113 -19.92708 -18.14025 -18.01703 -16.82259 -16.51191 -16.23854 -15.85128 -15.48196 -14.91770 -14.87468 -14.31350 -14.09035 -14.02756 -13.76829 -13.41454 -12.99252 -12.84603 -12.73226 -12.62396 -12.51919 -12.16739 -11.92839 -11.81324 -11.66735 -11.51456 -11.34057 -11.08723 -10.80107 -10.69414 -10.44109 -10.19265 -10.04350 -9.04571 -7.92899 -5.96834 0.63775 1.49666 1.52193 1.56280 1.70749 2.56634 2.89494 3.39527 3.87533 3.95193 4.17397 4.28192 4.36299 4.40809 4.67778 4.70929 4.78997 4.80920 4.86275 4.99390 5.08796 5.15168 5.15939 5.24170 5.33024 5.37716 5.45373 5.49518 5.58476 5.63628 5.70007 5.85238 5.88832 5.92742 6.02865 6.29256 6.41013 6.65037 7.19206 7.68504 9.14816 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.007314 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.480090 B = 3827.289110 C = 4480.114080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.151 4.151 4 C 0.064 3.936 5 H -0.011 1.011 6 C -0.500 4.500 7 H 0.065 0.935 8 C 0.012 3.988 9 N -0.923 5.923 10 Si 0.930 3.070 11 H -0.270 1.270 12 H -0.301 1.301 13 H -0.275 1.275 14 C -0.085 4.085 15 H 0.097 0.903 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.406 4.406 19 S 1.263 4.737 20 O -0.927 6.927 21 C -0.434 4.434 22 C -0.085 4.085 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.020 0.980 29 H 0.039 0.961 30 H 0.251 0.749 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 3.275 5.236 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.045 3.955 5 H 0.008 0.992 6 C -0.538 4.538 7 H 0.083 0.917 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.758 3.242 11 H -0.195 1.195 12 H -0.227 1.227 13 H -0.201 1.201 14 C -0.104 4.104 15 H 0.115 0.885 16 C -0.160 4.160 17 C -0.138 4.138 18 C -0.544 4.544 19 S 1.464 4.536 20 O -0.923 6.923 21 C -0.573 4.573 22 C -0.123 4.123 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.264 3.617 5.027 11.143 hybrid contribution 2.317 -0.641 1.203 2.688 sum -6.947 2.977 6.230 9.795 Atomic orbital electron populations 1.21916 0.95048 1.01751 1.00854 1.21014 0.95502 0.93909 1.00192 1.22224 0.99368 0.97786 1.01377 1.18720 0.92803 0.93312 0.90655 0.99238 1.21581 1.20048 0.93961 1.18242 0.91664 1.25572 0.95534 1.00106 0.97342 1.70095 1.21545 1.36867 1.27851 0.86045 0.77616 0.82971 0.77557 1.19477 1.22715 1.20092 1.21391 1.01389 0.92624 0.94950 0.88501 1.21638 0.97502 1.00391 0.96475 1.19896 0.97972 0.98380 0.97597 1.26191 1.07883 1.13899 1.06474 1.69980 0.88621 0.87684 1.07306 1.92928 1.64494 1.68735 1.66111 1.27515 1.15685 1.09436 1.04651 1.21651 1.01269 0.97232 0.92152 0.90395 0.92925 0.94322 0.94820 0.89933 0.96057 0.94199 0.93956 0.91730 0.93200 0.91848 0.88954 0.90666 0.86073 0.89913 0.87702 0.92971 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 7.82 71.98 0.56 -3.76 16 2 C -0.09 -3.46 2.48 -10.79 -0.03 -3.49 16 3 C -0.15 -5.28 8.43 71.98 0.61 -4.68 16 4 C 0.06 2.67 1.06 -11.54 -0.01 2.65 16 5 H -0.01 -0.53 7.73 -2.39 -0.02 -0.55 16 6 C -0.50 -23.77 6.82 25.60 0.17 -23.60 16 7 H 0.07 2.94 7.34 -2.91 -0.02 2.92 16 8 C 0.01 0.61 5.03 84.65 0.43 1.04 16 9 N -0.92 -51.58 12.20 21.45 0.26 -51.32 16 10 Si 0.93 41.40 29.54 68.60 2.03 43.42 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 C -0.09 -2.62 0.84 -11.26 -0.01 -2.63 16 15 H 0.10 2.57 4.94 -2.39 -0.01 2.56 16 16 C -0.12 -3.72 4.87 30.19 0.15 -3.57 16 17 C -0.10 -2.36 5.00 28.33 0.14 -2.21 16 18 C -0.41 -8.88 6.05 69.66 0.42 -8.46 16 19 S 1.26 29.28 12.98 -56.49 -0.73 28.55 16 20 O -0.93 -32.55 18.14 -148.98 -2.70 -35.25 16 21 C -0.43 -10.45 5.57 72.24 0.40 -10.04 16 22 C -0.08 -2.25 3.30 30.85 0.10 -2.15 16 23 H 0.08 1.88 5.22 -2.39 -0.01 1.87 16 24 H 0.05 1.69 7.63 -2.39 -0.02 1.67 16 25 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.03 1.65 6.59 -2.39 -0.02 1.64 16 27 H 0.08 2.38 4.20 -2.39 -0.01 2.37 16 28 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.06 2.38 6.41 -2.39 -0.02 2.36 16 32 H 0.05 1.46 6.24 -2.39 -0.01 1.44 16 33 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.09 1.88 6.98 -2.39 -0.02 1.86 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.08 2.06 7.07 -2.53 -0.02 2.04 16 38 H 0.10 2.41 8.14 -2.55 -0.02 2.39 16 39 H 0.05 1.56 7.17 -2.39 -0.02 1.54 16 40 H 0.09 2.08 4.38 -2.39 -0.01 2.07 16 Total: -1.00 -65.64 298.45 2.80 -62.84 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.01 Total: 12.66 kcal Atomic # 6 Polarization: -63.83 SS G_CDS: 2.94 Total: -60.90 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.26 Total: -51.32 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.70 Total: -35.25 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 29.28 SS G_CDS: -0.73 Total: 28.55 kcal Total: -65.64 2.80 -62.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.305 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds