Wall clock time and date at job start Mon Mar 30 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99787 * 2 1 4 4 H 1.08997 * 109.46995 * 326.63740 * 3 2 1 5 5 C 1.50701 * 109.46887 * 206.63820 * 3 2 1 6 6 H 1.08002 * 119.99755 * 239.99727 * 5 3 2 7 7 C 1.37875 * 120.00205 * 59.73064 * 5 3 2 8 8 N 1.31516 * 119.99971 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00300 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47300 * 89.99374 * 9 7 5 11 11 H 1.48497 * 109.47112 * 209.99962 * 9 7 5 12 12 H 1.48502 * 109.46837 * 329.99577 * 9 7 5 13 13 C 1.50700 * 109.47062 * 86.64099 * 3 2 1 14 14 C 1.34502 * 125.78157 * 225.39201 * 13 3 2 15 15 C 1.41393 * 106.84607 * 179.85288 * 14 13 3 16 16 C 1.34619 * 106.83769 * 0.39889 * 15 14 13 17 17 Br 1.89102 * 125.79916 * 179.74797 * 16 15 14 18 18 O 1.34305 * 108.39924 * 359.75516 * 16 15 14 19 19 H 1.09003 * 109.46882 * 184.00362 * 1 2 3 20 20 H 1.09002 * 109.46745 * 303.99751 * 1 2 3 21 21 H 1.08995 * 109.47702 * 64.00079 * 1 2 3 22 22 H 1.00904 * 110.99896 * 236.05436 * 2 1 3 23 23 H 0.97000 * 119.99997 * 179.97438 * 8 7 5 24 24 H 1.07997 * 126.57132 * 359.97438 * 14 13 3 25 25 H 1.08007 * 126.58203 * 180.15614 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3242 2.0182 -0.5651 5 6 3.3610 1.3853 -0.6370 6 1 4.2173 1.7217 -0.0714 7 6 3.5182 0.9633 -1.9402 8 7 2.4764 0.5482 -2.6271 9 14 5.2109 0.9811 -2.7301 10 1 5.8833 -0.3207 -2.4891 11 1 5.0727 1.2039 -4.1917 12 1 6.0223 2.0745 -2.1372 13 6 2.0976 1.8703 1.4184 14 6 1.6999 3.0776 1.8581 15 6 1.9772 3.1207 3.2439 16 6 2.5365 1.9395 3.5666 17 35 3.1236 1.4277 5.2898 18 8 2.6067 1.1864 2.4568 19 1 -0.3633 -1.0252 0.0718 20 1 -0.3633 0.5746 0.8520 21 1 -0.3634 0.4504 -0.9236 22 1 1.8305 -0.5260 -0.7815 23 1 2.5869 0.2516 -3.5441 24 1 1.2525 3.8625 1.2664 25 1 1.7818 3.9449 3.9140 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040154.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:46 Heat of formation + Delta-G solvation = 18.289474 kcal Electronic energy + Delta-G solvation = -12265.430042 eV Core-core repulsion = 9906.071737 eV Total energy + Delta-G solvation = -2359.358304 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.995 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.84643 -35.61295 -32.48807 -32.13342 -31.47964 -29.10666 -26.41192 -23.82137 -22.03271 -21.15088 -19.47584 -16.97468 -16.26850 -15.29312 -14.98679 -13.97723 -13.80442 -13.31397 -12.65210 -12.31543 -12.22063 -11.97306 -11.58562 -11.05605 -10.98567 -10.82223 -10.61704 -10.35044 -10.02053 -9.54272 -9.24581 -8.86687 -7.66845 -7.20219 -6.31564 -4.39961 1.38485 2.24341 3.18990 3.21537 3.27906 3.33391 4.15341 4.26675 4.94844 5.48827 5.59566 5.99550 6.18984 6.24431 6.37756 6.48949 6.65767 6.67494 6.90500 7.08386 7.65107 7.70411 7.78530 8.42645 8.67075 8.92398 9.28377 10.74956 Molecular weight = 258.99amu Principal moments of inertia in cm(-1) A = 0.031775 B = 0.006606 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.997853 B = 4237.815413 C = 4657.064198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.687 5.687 3 C 0.275 3.725 4 H 0.045 0.955 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.896 5.896 9 Si 0.908 3.092 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.101 3.899 14 C -0.259 4.259 15 C -0.150 4.150 16 C -0.067 4.067 17 Br 0.020 6.980 18 O -0.140 6.140 19 H 0.047 0.953 20 H 0.042 0.958 21 H 0.017 0.983 22 H 0.367 0.633 23 H 0.269 0.731 24 H 0.147 0.853 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 2.422 11.446 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.323 5.323 3 C 0.167 3.833 4 H 0.062 0.938 5 C -0.556 4.556 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.535 5.535 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.046 3.954 14 C -0.279 4.279 15 C -0.172 4.172 16 C -0.195 4.195 17 Br 0.103 6.897 18 O -0.035 6.035 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.035 0.965 22 H 0.191 0.809 23 H 0.079 0.921 24 H 0.165 0.835 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.826 1.769 12.567 12.717 hybrid contribution 0.419 0.568 -1.647 1.792 sum -0.407 2.337 10.920 11.174 Atomic orbital electron populations 1.22071 0.91366 0.99706 0.98653 1.60726 1.04633 1.15558 1.51339 1.17943 0.96827 0.88046 0.80507 0.93822 1.21128 0.92843 1.44534 0.97130 0.91590 1.25026 0.97837 0.94045 0.96633 1.69783 1.29517 1.43203 1.11027 0.86319 0.83231 0.78848 0.78122 1.20192 1.20990 1.19601 1.23956 0.91746 0.90207 0.89522 1.21486 1.12510 0.99684 0.94234 1.21500 1.02681 0.96612 0.96393 1.23500 1.13975 0.94585 0.87443 1.96652 1.89469 1.93721 1.09833 1.84199 1.63458 1.41228 1.14651 0.93407 0.93939 0.96478 0.80918 0.92085 0.83549 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.47 60.06 0.63 1.31 15 2 N -0.69 -16.58 6.60 -116.50 -0.77 -17.35 15 3 C 0.28 6.85 2.38 -70.01 -0.17 6.69 15 4 H 0.04 1.14 7.80 -51.93 -0.41 0.74 15 5 C -0.52 -13.86 8.67 -34.44 -0.30 -14.15 15 6 H 0.07 1.80 7.74 -52.49 -0.41 1.39 15 7 C 0.07 1.76 5.11 -17.82 -0.09 1.67 15 8 N -0.90 -23.78 11.77 55.43 0.65 -23.13 15 9 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 15 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 13 C 0.10 2.31 5.89 -35.63 -0.21 2.10 15 14 C -0.26 -5.16 10.79 -39.70 -0.43 -5.59 15 15 C -0.15 -2.68 10.86 -39.66 -0.43 -3.11 15 16 C -0.07 -1.29 7.80 29.45 0.23 -1.06 15 17 Br 0.02 0.30 34.09 -68.01 -2.32 -2.02 15 18 O -0.14 -3.21 10.65 5.57 0.06 -3.15 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 20 H 0.04 0.84 8.00 -51.93 -0.42 0.42 15 21 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 15 22 H 0.37 9.43 6.50 -39.29 -0.26 9.17 15 23 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 24 H 0.15 2.62 8.06 -52.49 -0.42 2.20 15 25 H 0.15 2.11 8.06 -52.48 -0.42 1.69 15 LS Contribution 246.69 15.07 3.72 3.72 Total: -1.00 -26.85 246.69 -6.75 -33.60 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -2.31 Total: 5.01 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.77 Total: -12.16 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.12 Total: -40.48 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.06 Total: -3.15 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -2.32 Total: -2.02 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.85 -6.75 -33.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040154.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.893 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds