Wall clock time and date at job start Mon Mar 30 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99787 * 2 1 4 4 H 1.08997 * 109.46995 * 326.63740 * 3 2 1 5 5 C 1.50701 * 109.46887 * 206.63820 * 3 2 1 6 6 H 1.08002 * 119.99755 * 239.99727 * 5 3 2 7 7 C 1.37875 * 120.00205 * 59.73064 * 5 3 2 8 8 N 1.31516 * 119.99971 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00300 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47300 * 89.99374 * 9 7 5 11 11 H 1.48497 * 109.47112 * 209.99962 * 9 7 5 12 12 H 1.48502 * 109.46837 * 329.99577 * 9 7 5 13 13 C 1.50700 * 109.47062 * 86.64099 * 3 2 1 14 14 C 1.34502 * 125.78157 * 225.39201 * 13 3 2 15 15 C 1.41393 * 106.84607 * 179.85288 * 14 13 3 16 16 C 1.34619 * 106.83769 * 0.39889 * 15 14 13 17 17 Br 1.89102 * 125.79916 * 179.74797 * 16 15 14 18 18 O 1.34305 * 108.39924 * 359.75516 * 16 15 14 19 19 H 1.09003 * 109.46882 * 184.00362 * 1 2 3 20 20 H 1.09002 * 109.46745 * 303.99751 * 1 2 3 21 21 H 1.08995 * 109.47702 * 64.00079 * 1 2 3 22 22 H 1.00904 * 110.99896 * 236.05436 * 2 1 3 23 23 H 0.97000 * 119.99997 * 179.97438 * 8 7 5 24 24 H 1.07997 * 126.57132 * 359.97438 * 14 13 3 25 25 H 1.08007 * 126.58203 * 180.15614 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3242 2.0182 -0.5651 5 6 3.3610 1.3853 -0.6370 6 1 4.2173 1.7217 -0.0714 7 6 3.5182 0.9633 -1.9402 8 7 2.4764 0.5482 -2.6271 9 14 5.2109 0.9811 -2.7301 10 1 5.8833 -0.3207 -2.4891 11 1 5.0727 1.2039 -4.1917 12 1 6.0223 2.0745 -2.1372 13 6 2.0976 1.8703 1.4184 14 6 1.6999 3.0776 1.8581 15 6 1.9772 3.1207 3.2439 16 6 2.5365 1.9395 3.5666 17 35 3.1236 1.4277 5.2898 18 8 2.6067 1.1864 2.4568 19 1 -0.3633 -1.0252 0.0718 20 1 -0.3633 0.5746 0.8520 21 1 -0.3634 0.4504 -0.9236 22 1 1.8305 -0.5260 -0.7815 23 1 2.5869 0.2516 -3.5441 24 1 1.2525 3.8625 1.2664 25 1 1.7818 3.9449 3.9140 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040154.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:46 Heat of formation + Delta-G solvation = 1.147334 kcal Electronic energy + Delta-G solvation = -12266.173381 eV Core-core repulsion = 9906.071737 eV Total energy + Delta-G solvation = -2360.101643 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.995 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.43170 -37.47077 -34.10127 -34.01805 -32.92268 -30.78560 -28.16829 -25.66755 -23.79164 -22.70390 -21.10181 -18.89829 -17.89971 -17.02104 -16.79961 -15.74286 -15.48290 -15.14636 -14.33761 -13.91373 -13.72621 -13.63282 -13.40053 -12.83800 -12.72418 -12.34920 -12.23885 -11.99106 -11.55658 -11.44398 -10.84820 -10.78039 -9.24022 -9.07379 -8.29072 -6.45911 -0.02836 0.68982 1.41508 1.43274 1.53130 1.66686 2.37190 2.56816 2.96373 3.87479 4.09069 4.33721 4.58537 4.65352 4.75962 4.91780 4.98153 4.99843 5.08209 5.51096 5.62238 5.80312 6.12855 6.50988 6.70537 6.97252 7.25494 8.75738 Molecular weight = 258.99amu Principal moments of inertia in cm(-1) A = 0.031775 B = 0.006606 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.997853 B = 4237.815413 C = 4657.064198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.695 5.695 3 C 0.279 3.721 4 H 0.022 0.978 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.030 3.970 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.272 1.272 13 C 0.060 3.940 14 C -0.250 4.250 15 C -0.140 4.140 16 C -0.080 4.080 17 Br 0.059 6.941 18 O -0.167 6.167 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.009 0.991 22 H 0.355 0.645 23 H 0.273 0.727 24 H 0.163 0.837 25 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 2.927 12.465 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.329 5.329 3 C 0.170 3.830 4 H 0.040 0.960 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.171 4.171 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.197 1.197 13 C 0.006 3.994 14 C -0.270 4.270 15 C -0.162 4.162 16 C -0.207 4.207 17 Br 0.142 6.858 18 O -0.064 6.064 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.028 0.972 22 H 0.176 0.824 23 H 0.082 0.918 24 H 0.180 0.820 25 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.598 2.283 13.597 13.800 hybrid contribution 0.321 0.416 -1.838 1.912 sum -0.276 2.699 11.759 12.068 Atomic orbital electron populations 1.22082 0.89501 1.01142 0.98517 1.60763 1.06466 1.15114 1.50518 1.17679 0.95490 0.87861 0.81971 0.96032 1.21298 0.93438 1.45399 0.97816 0.93072 1.25703 1.01080 0.93457 0.96862 1.69857 1.30981 1.43186 1.11256 0.85405 0.79232 0.78696 0.77460 1.19876 1.20106 1.19663 1.23629 0.94871 0.91622 0.89243 1.21808 1.10898 0.98740 0.95525 1.21897 1.01327 0.97196 0.95781 1.24244 1.13545 0.94904 0.88029 1.96680 1.89132 1.93632 1.06377 1.84132 1.64191 1.42425 1.15625 0.91247 0.93216 0.97241 0.82375 0.91797 0.81958 0.79734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 10.47 127.69 1.34 2.90 15 2 N -0.69 -34.06 6.60 -522.48 -3.45 -37.50 15 3 C 0.28 14.18 2.38 43.42 0.10 14.29 15 4 H 0.02 1.19 7.80 -2.39 -0.02 1.17 15 5 C -0.54 -29.58 8.67 25.60 0.22 -29.36 15 6 H 0.05 2.87 7.74 -2.91 -0.02 2.84 15 7 C 0.03 1.58 5.11 84.65 0.43 2.02 15 8 N -0.91 -48.93 11.77 21.45 0.25 -48.67 15 9 Si 0.97 42.10 29.54 68.60 2.03 44.12 15 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 13 C 0.06 2.78 5.89 24.83 0.15 2.93 15 14 C -0.25 -9.68 10.79 22.19 0.24 -9.44 15 15 C -0.14 -4.68 10.86 22.22 0.24 -4.44 15 16 C -0.08 -2.94 7.80 66.99 0.52 -2.42 15 17 Br 0.06 1.63 34.09 -20.37 -0.69 0.94 15 18 O -0.17 -7.62 10.65 -2.99 -0.03 -7.65 15 19 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 20 H 0.05 1.95 8.00 -2.39 -0.02 1.93 15 21 H 0.01 0.39 8.13 -2.39 -0.02 0.37 15 22 H 0.35 18.59 6.50 -89.69 -0.58 18.00 15 23 H 0.27 13.78 8.31 -92.71 -0.77 13.01 15 24 H 0.16 5.60 8.06 -2.91 -0.02 5.58 15 25 H 0.19 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -57.20 246.69 1.97 -55.23 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.62 Total: 17.08 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.25 Total: -23.53 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.20 Total: -86.18 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.03 Total: -7.65 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 35 Polarization: 1.63 SS G_CDS: -0.69 Total: 0.94 kcal Total: -57.20 1.97 -55.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040154.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.374 kcal (2) G-P(sol) polarization free energy of solvation -57.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds