Wall clock time and date at job start Mon Mar 30 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47035 * 300.00271 * 3 2 1 6 6 H 1.48502 * 109.46963 * 60.00103 * 3 2 1 7 7 C 1.37881 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.33789 * 299.20250 * 9 7 2 11 11 C 1.54479 * 110.37307 * 176.83167 * 9 7 2 12 12 C 1.54509 * 104.06670 * 217.19097 * 11 9 7 13 13 C 1.54475 * 104.05998 * 359.97438 * 12 11 9 14 14 H 1.09004 * 110.46774 * 265.09840 * 13 12 11 15 15 C 1.50708 * 110.37192 * 142.81128 * 13 12 11 16 16 N 1.28989 * 124.90012 * 288.47143 * 15 13 12 17 17 C 1.31824 * 117.13346 * 180.22660 * 16 15 13 18 18 C 1.33763 * 114.46121 * 359.48071 * 17 16 15 19 19 Cl 1.73597 * 126.04523 * 180.30567 * 18 17 16 20 20 S 1.70969 * 124.89982 * 108.16034 * 15 13 12 21 21 O 1.44422 * 104.80769 * 23.98136 * 13 12 11 22 22 H 0.97005 * 120.00093 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.50943 * 335.83951 * 11 9 7 24 24 H 1.09003 * 110.51352 * 98.40760 * 11 9 7 25 25 H 1.09001 * 110.50949 * 241.35432 * 12 11 9 26 26 H 1.08998 * 110.50905 * 118.64402 * 12 11 9 27 27 H 1.08002 * 122.77350 * 179.75433 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6293 -2.5776 0.8925 11 6 2.2342 -3.6879 -0.0789 12 6 1.5112 -4.7138 -0.9800 13 6 0.1763 -4.0238 -1.3379 14 1 -0.6110 -4.3379 -0.6525 15 6 -0.2117 -4.3375 -2.7600 16 7 0.3780 -3.8678 -3.8066 17 6 -0.0925 -4.2410 -4.9801 18 6 -1.1314 -5.0813 -4.9185 19 17 -1.9745 -5.7643 -6.2736 20 16 -1.4923 -5.3733 -3.2187 21 8 0.4390 -2.6115 -1.1884 22 1 -0.4850 0.8401 0.0004 23 1 3.1746 -3.3760 -0.5335 24 1 2.4104 -4.1047 0.9128 25 1 1.3280 -5.6393 -0.4341 26 1 2.0940 -4.9091 -1.8801 27 1 0.3290 -3.9002 -5.9142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306662879.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:13 Heat of formation + Delta-G solvation = -4.842476 kcal Electronic energy + Delta-G solvation = -14808.889969 eV Core-core repulsion = 12105.709145 eV Total energy + Delta-G solvation = -2703.180824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70230 -37.96383 -36.82162 -32.76209 -31.08880 -30.65150 -28.17095 -25.76277 -23.76665 -21.81386 -20.14446 -19.51439 -18.26217 -16.69782 -15.94569 -15.32300 -14.61723 -14.59823 -14.20877 -14.05365 -13.46504 -12.79273 -12.41674 -12.25455 -12.13023 -11.72559 -11.03404 -10.92405 -10.88289 -10.63944 -10.42938 -10.09271 -9.85423 -9.43611 -9.17638 -9.15772 -8.70741 -8.61897 -8.19377 -6.04437 -4.16122 0.63719 0.90523 1.65606 2.18226 2.90993 3.30434 3.38480 3.42005 4.33995 4.41383 4.89742 5.22180 5.29485 5.40218 5.49594 5.62428 5.97689 6.00905 6.23093 6.33918 6.57008 6.68777 6.75017 7.42411 7.86392 7.87593 8.13161 8.42268 8.92863 9.54062 11.03543 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.005325 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.108040 B = 5257.197742 C = 5677.365859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.076 3.924 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.203 3.797 10 H 0.030 0.970 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.133 3.867 14 H 0.074 0.926 15 C 0.091 3.909 16 N -0.441 5.441 17 C 0.066 3.934 18 C -0.211 4.211 19 Cl -0.008 7.008 20 S 0.153 5.847 21 O -0.325 6.325 22 H 0.261 0.739 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 -12.403 -6.882 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.148 3.852 10 H 0.047 0.953 11 C -0.181 4.181 12 C -0.178 4.178 13 C 0.070 3.930 14 H 0.092 0.908 15 C -0.187 4.187 16 N -0.155 5.155 17 C -0.089 4.089 18 C -0.358 4.358 19 Cl 0.020 6.980 20 S 0.407 5.593 21 O -0.244 6.244 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.650 -12.418 -6.519 14.492 hybrid contribution 0.638 1.000 -1.059 1.590 sum -3.012 -11.417 -7.578 14.031 Atomic orbital electron populations 1.70030 1.06079 1.26635 1.47083 1.25095 0.94820 0.99469 0.93581 0.86517 0.80249 0.83482 0.77625 1.19539 1.20815 1.20889 1.21056 0.92753 0.89545 1.53017 0.91531 1.20642 0.86915 0.92986 0.84671 0.95269 1.23035 1.00855 0.96361 0.97861 1.22927 0.95816 0.98539 1.00486 1.21374 0.96845 0.89740 0.85003 0.90799 1.27367 0.94429 0.96895 0.99997 1.66451 1.29240 1.22883 0.96891 1.22046 0.93606 0.95644 0.97580 1.26873 1.05014 1.10311 0.93629 1.98341 1.76118 1.83350 1.40222 1.83928 1.33490 1.45535 0.96335 1.89687 1.72167 1.14574 1.47963 0.92900 0.91305 0.92280 0.91580 0.91192 0.80243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 12.94 55.43 0.72 -24.88 15 2 C 0.08 2.17 5.42 -17.82 -0.10 2.07 15 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.53 -14.72 8.78 -34.44 -0.30 -15.03 15 8 H 0.07 1.81 7.59 -52.49 -0.40 1.41 15 9 C 0.20 5.16 3.11 -27.11 -0.08 5.07 15 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 11 C -0.14 -2.90 6.61 -25.16 -0.17 -3.07 15 12 C -0.14 -2.44 6.62 -25.17 -0.17 -2.61 15 13 C 0.13 2.65 3.81 -27.11 -0.10 2.55 15 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 15 C 0.09 1.67 6.23 -13.47 -0.08 1.59 15 16 N -0.44 -8.52 10.53 -11.83 -0.12 -8.64 15 17 C 0.07 1.03 11.32 -19.13 -0.22 0.81 15 18 C -0.21 -2.97 7.21 29.16 0.21 -2.76 15 19 Cl -0.01 -0.10 29.31 -51.86 -1.52 -1.62 15 20 S 0.15 2.18 23.18 -107.50 -2.49 -0.31 15 21 O -0.33 -8.47 10.54 -35.23 -0.37 -8.84 15 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 23 H 0.07 1.43 7.72 -51.93 -0.40 1.03 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 15 26 H 0.07 1.24 7.87 -51.93 -0.41 0.83 15 27 H 0.18 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -30.97 268.57 -8.23 -39.20 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -2.46 Total: -4.08 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.01 Total: -11.37 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.59 Total: -33.52 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.37 Total: -8.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.49 Total: -0.31 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.97 -8.23 -39.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662879.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.362 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds