Wall clock time and date at job start Mon Mar 30 2020 07:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47035 * 300.00271 * 3 2 1 6 6 H 1.48502 * 109.46963 * 60.00103 * 3 2 1 7 7 C 1.37881 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99796 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.33789 * 299.20250 * 9 7 2 11 11 C 1.54479 * 110.37307 * 176.83167 * 9 7 2 12 12 C 1.54509 * 104.06670 * 217.19097 * 11 9 7 13 13 C 1.54475 * 104.05998 * 359.97438 * 12 11 9 14 14 H 1.09004 * 110.46774 * 265.09840 * 13 12 11 15 15 C 1.50708 * 110.37192 * 142.81128 * 13 12 11 16 16 N 1.28989 * 124.90012 * 288.47143 * 15 13 12 17 17 C 1.31824 * 117.13346 * 180.22660 * 16 15 13 18 18 C 1.33763 * 114.46121 * 359.48071 * 17 16 15 19 19 Cl 1.73597 * 126.04523 * 180.30567 * 18 17 16 20 20 S 1.70969 * 124.89982 * 108.16034 * 15 13 12 21 21 O 1.44422 * 104.80769 * 23.98136 * 13 12 11 22 22 H 0.97005 * 120.00093 * 359.97438 * 1 2 3 23 23 H 1.09003 * 110.50943 * 335.83951 * 11 9 7 24 24 H 1.09003 * 110.51352 * 98.40760 * 11 9 7 25 25 H 1.09001 * 110.50949 * 241.35432 * 12 11 9 26 26 H 1.08998 * 110.50905 * 118.64402 * 12 11 9 27 27 H 1.08002 * 122.77350 * 179.75433 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6293 -2.5776 0.8925 11 6 2.2342 -3.6879 -0.0789 12 6 1.5112 -4.7138 -0.9800 13 6 0.1763 -4.0238 -1.3379 14 1 -0.6110 -4.3379 -0.6525 15 6 -0.2117 -4.3375 -2.7600 16 7 0.3780 -3.8678 -3.8066 17 6 -0.0925 -4.2410 -4.9801 18 6 -1.1314 -5.0813 -4.9185 19 17 -1.9745 -5.7643 -6.2736 20 16 -1.4923 -5.3733 -3.2187 21 8 0.4390 -2.6115 -1.1884 22 1 -0.4850 0.8401 0.0004 23 1 3.1746 -3.3760 -0.5335 24 1 2.4104 -4.1047 0.9128 25 1 1.3280 -5.6393 -0.4341 26 1 2.0940 -4.9091 -1.8801 27 1 0.3290 -3.9002 -5.9142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306662879.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:10 Heat of formation + Delta-G solvation = -25.218675 kcal Electronic energy + Delta-G solvation = -14809.773547 eV Core-core repulsion = 12105.709145 eV Total energy + Delta-G solvation = -2704.064402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03057 -39.59709 -37.88698 -34.79917 -32.73710 -32.19001 -29.73413 -27.44243 -25.34015 -23.37782 -21.84885 -20.82732 -19.60188 -18.65577 -17.25645 -16.90360 -16.50495 -15.98003 -15.76743 -15.59112 -14.82480 -14.35664 -14.25118 -13.59422 -13.37727 -13.28528 -12.86316 -12.45596 -12.43225 -12.18447 -11.98417 -11.94886 -11.47554 -11.09287 -10.76221 -10.64527 -10.33644 -10.16741 -9.83691 -8.17165 -6.35793 -0.59799 -0.25817 0.43982 1.05271 1.39422 1.41623 1.53518 1.65063 2.40437 3.00486 3.12877 3.59944 3.87121 4.03293 4.11559 4.14509 4.48598 4.53261 4.73160 4.93792 4.97592 5.08183 5.20785 5.52051 5.74205 6.13432 6.46727 6.66434 6.89454 7.38848 8.91452 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.005325 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.108040 B = 5257.197742 C = 5677.365859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.194 3.806 10 H 0.005 0.995 11 C -0.135 4.135 12 C -0.125 4.125 13 C 0.124 3.876 14 H 0.088 0.912 15 C 0.050 3.950 16 N -0.480 5.480 17 C 0.049 3.951 18 C -0.205 4.205 19 Cl 0.019 6.981 20 S 0.225 5.775 21 O -0.368 6.368 22 H 0.261 0.739 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -13.816 -7.624 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.139 3.861 10 H 0.023 0.977 11 C -0.173 4.173 12 C -0.165 4.165 13 C 0.062 3.938 14 H 0.106 0.894 15 C -0.226 4.226 16 N -0.195 5.195 17 C -0.105 4.105 18 C -0.353 4.353 19 Cl 0.047 6.953 20 S 0.479 5.521 21 O -0.287 6.287 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.756 -13.848 -7.249 16.076 hybrid contribution 0.554 1.301 -0.928 1.691 sum -3.202 -12.547 -8.177 15.315 Atomic orbital electron populations 1.70160 1.07623 1.27374 1.48684 1.25955 0.95671 1.03132 0.93291 0.85480 0.79289 0.79039 0.77656 1.18523 1.21070 1.19784 1.21496 0.93098 0.91296 1.52694 0.91610 1.20549 0.87566 0.94116 0.83906 0.97691 1.22907 0.99237 0.95288 0.99880 1.22876 0.94204 0.99115 1.00257 1.21608 0.98416 0.86944 0.86872 0.89431 1.27074 0.96952 0.99429 0.99180 1.66403 1.30863 1.24065 0.98167 1.22278 0.94460 0.96476 0.97285 1.27063 1.04274 1.09118 0.94808 1.98359 1.75332 1.82749 1.38813 1.83572 1.30197 1.42791 0.95526 1.89562 1.72577 1.18848 1.47719 0.92972 0.92340 0.89771 0.87468 0.91342 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.09 12.94 21.45 0.28 -54.81 15 2 C 0.02 1.25 5.42 84.66 0.46 1.71 15 3 Si 0.96 44.93 29.54 68.60 2.03 46.95 15 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 15 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.55 -31.45 8.78 25.60 0.22 -31.23 15 8 H 0.07 3.64 7.59 -2.91 -0.02 3.62 15 9 C 0.19 10.11 3.11 30.35 0.09 10.21 15 10 H 0.01 0.30 8.14 -2.38 -0.02 0.28 15 11 C -0.14 -5.42 6.61 31.61 0.21 -5.21 15 12 C -0.13 -4.25 6.62 31.61 0.21 -4.04 15 13 C 0.12 4.88 3.81 30.35 0.12 5.00 15 14 H 0.09 3.11 8.14 -2.38 -0.02 3.09 15 15 C 0.05 1.81 6.23 88.53 0.55 2.36 15 16 N -0.48 -18.40 10.53 -191.35 -2.02 -20.41 15 17 C 0.05 1.47 11.32 83.68 0.95 2.41 15 18 C -0.20 -5.32 7.21 66.80 0.48 -4.84 15 19 Cl 0.02 0.40 29.31 -2.72 -0.08 0.32 15 20 S 0.23 5.92 23.18 -56.49 -1.31 4.61 15 21 O -0.37 -19.68 10.54 -148.98 -1.57 -21.25 15 22 H 0.26 15.06 8.31 -92.70 -0.77 14.29 15 23 H 0.06 2.43 7.72 -2.39 -0.02 2.41 15 24 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 25 H 0.11 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.07 2.34 7.87 -2.39 -0.02 2.32 15 27 H 0.20 4.87 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -68.62 268.57 1.81 -66.81 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.19 Total: 1.41 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 3.29 Total: -23.63 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.74 Total: -75.23 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.57 Total: -21.25 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.31 Total: 4.61 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -68.62 1.81 -66.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662879.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.594 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds