Wall clock time and date at job start Mon Mar 30 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48499 * 109.46973 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.46970 * 29.99769 * 3 2 1 6 6 H 1.48506 * 109.47072 * 150.00000 * 3 2 1 7 7 C 1.37881 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.35501 * 60.68577 * 9 7 2 11 11 C 1.54940 * 110.31016 * 182.83184 * 9 7 2 12 12 C 1.55300 * 100.94415 * 155.35699 * 11 9 7 13 13 C 1.54377 * 102.25502 * 325.86750 * 12 11 9 14 14 H 1.09000 * 109.83189 * 261.84669 * 13 12 11 15 15 C 1.50701 * 109.91199 * 140.90897 * 13 12 11 16 16 N 1.28986 * 124.89710 * 105.36347 * 15 13 12 17 17 C 1.31839 * 117.13008 * 179.97438 * 16 15 13 18 18 C 1.33753 * 114.45937 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 126.04081 * 180.02562 * 18 17 16 20 20 S 1.70964 * 124.90273 * 285.07012 * 15 13 12 21 21 O 1.43245 * 107.58529 * 21.35358 * 13 12 11 22 22 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09007 * 111.12756 * 37.43650 * 11 9 7 24 24 H 1.09006 * 111.12498 * 273.27785 * 11 9 7 25 25 H 1.09006 * 110.85287 * 207.67375 * 12 11 9 26 26 H 1.09004 * 111.02471 * 84.13526 * 12 11 9 27 27 H 1.07999 * 122.76730 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6286 -2.5776 -0.8907 11 6 2.2390 -3.6906 0.0730 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9659 1.6418 14 1 0.8147 -4.0166 2.6600 15 6 -0.9780 -4.5040 1.6008 16 7 -1.5257 -5.2095 2.5314 17 6 -2.7693 -5.6010 2.3359 18 6 -3.2992 -5.2029 1.1741 19 17 -4.9057 -5.5463 0.6132 20 16 -2.0810 -4.2614 0.3173 21 8 0.4439 -2.6088 1.1836 22 1 -0.4850 0.8400 -0.0004 23 1 3.0838 -3.4615 0.7226 24 1 2.5780 -3.9808 -0.9215 25 1 1.9281 -5.5073 1.2595 26 1 0.7415 -5.2882 -0.0679 27 1 -3.3149 -6.1948 3.0543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306662880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:17 Heat of formation + Delta-G solvation = -7.736849 kcal Electronic energy + Delta-G solvation = -14903.668338 eV Core-core repulsion = 12200.362005 eV Total energy + Delta-G solvation = -2703.306334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59816 -38.17045 -36.69463 -32.81519 -31.22684 -30.63304 -28.22673 -25.58618 -23.79799 -21.33631 -20.55213 -19.82348 -17.97217 -16.69614 -16.06048 -15.20226 -14.96106 -14.50332 -14.32671 -13.76267 -13.50394 -12.60369 -12.34185 -12.08518 -12.01145 -11.83254 -11.07961 -10.94462 -10.74239 -10.64243 -10.52032 -10.39013 -10.04854 -9.45828 -9.25139 -8.95793 -8.73733 -8.57949 -8.14879 -6.09153 -4.22934 0.78448 1.13186 1.94355 2.35425 2.91114 3.27049 3.34651 3.37251 4.27773 4.36790 4.93061 5.20470 5.29245 5.37251 5.40191 5.57802 5.95614 6.10289 6.16238 6.25001 6.42083 6.57432 6.65067 7.40095 7.80594 7.85604 8.10538 8.39273 8.88857 9.48678 10.98103 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.005962 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.765661 B = 4695.276748 C = 5250.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.205 3.795 10 H 0.031 0.969 11 C -0.146 4.146 12 C -0.145 4.145 13 C 0.140 3.860 14 H 0.097 0.903 15 C 0.062 3.938 16 N -0.477 5.477 17 C 0.056 3.944 18 C -0.226 4.226 19 Cl -0.012 7.012 20 S 0.228 5.772 21 O -0.342 6.342 22 H 0.263 0.737 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -10.660 0.422 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.128 4.128 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.150 3.850 10 H 0.049 0.951 11 C -0.183 4.183 12 C -0.184 4.184 13 C 0.077 3.923 14 H 0.115 0.885 15 C -0.215 4.215 16 N -0.193 5.193 17 C -0.099 4.099 18 C -0.375 4.375 19 Cl 0.016 6.984 20 S 0.483 5.517 21 O -0.260 6.260 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.646 -9.966 -0.044 10.996 hybrid contribution -0.354 0.134 0.650 0.752 sum -5.000 -9.832 0.605 11.047 Atomic orbital electron populations 1.70015 1.06039 1.26872 1.46596 1.25083 0.94802 0.99412 0.93471 0.86593 0.80010 0.83201 0.78154 1.20480 1.21052 1.19689 1.21062 0.92793 0.89755 1.53721 0.91581 1.20691 0.86864 0.92886 0.84514 0.95100 1.23374 0.99310 0.95366 1.00292 1.23168 0.98142 0.98614 0.98513 1.21174 0.84270 0.86724 1.00132 0.88529 1.28213 1.02653 0.97812 0.92819 1.66462 1.09460 1.14405 1.28965 1.21789 0.90802 1.01641 0.95687 1.27128 0.94828 1.12901 1.02620 1.98332 1.17622 1.93779 1.88686 1.84618 1.02250 1.44333 1.20525 1.89009 1.71995 1.18628 1.46356 0.92731 0.90912 0.91285 0.90575 0.91487 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 12.93 55.43 0.72 -23.95 15 2 C 0.08 2.16 5.42 -17.82 -0.10 2.06 15 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.54 -14.36 8.81 -34.44 -0.30 -14.66 15 8 H 0.07 1.71 7.77 -52.48 -0.41 1.30 15 9 C 0.21 4.96 3.27 -26.86 -0.09 4.88 15 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 11 C -0.15 -2.77 6.53 -24.49 -0.16 -2.93 15 12 C -0.15 -2.44 6.54 -24.79 -0.16 -2.60 15 13 C 0.14 2.76 4.05 -27.16 -0.11 2.65 15 14 H 0.10 1.85 8.14 -51.93 -0.42 1.42 15 15 C 0.06 1.16 6.22 -13.47 -0.08 1.07 15 16 N -0.48 -8.53 10.54 -11.84 -0.12 -8.65 15 17 C 0.06 0.86 11.32 -19.12 -0.22 0.65 15 18 C -0.23 -3.49 7.21 29.16 0.21 -3.28 15 19 Cl -0.01 -0.16 29.31 -51.86 -1.52 -1.68 15 20 S 0.23 4.01 22.99 -107.50 -2.47 1.54 15 21 O -0.34 -8.42 10.04 -35.23 -0.35 -8.77 15 22 H 0.26 7.16 8.31 -40.82 -0.34 6.83 15 23 H 0.07 1.37 8.05 -51.93 -0.42 0.95 15 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.07 1.06 7.84 -51.93 -0.41 0.65 15 27 H 0.18 2.15 8.06 -52.49 -0.42 1.72 15 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -28.99 268.62 -8.22 -37.21 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: -2.48 Total: -3.35 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.01 Total: -12.16 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.59 Total: -32.60 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.35 Total: -8.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -2.47 Total: 1.54 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.99 -8.22 -37.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.474 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds