Wall clock time and date at job start Mon Mar 30 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48499 * 109.46973 * 269.99629 * 3 2 1 5 5 H 1.48500 * 109.46970 * 29.99769 * 3 2 1 6 6 H 1.48506 * 109.47072 * 150.00000 * 3 2 1 7 7 C 1.37881 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.35501 * 60.68577 * 9 7 2 11 11 C 1.54940 * 110.31016 * 182.83184 * 9 7 2 12 12 C 1.55300 * 100.94415 * 155.35699 * 11 9 7 13 13 C 1.54377 * 102.25502 * 325.86750 * 12 11 9 14 14 H 1.09000 * 109.83189 * 261.84669 * 13 12 11 15 15 C 1.50701 * 109.91199 * 140.90897 * 13 12 11 16 16 N 1.28986 * 124.89710 * 105.36347 * 15 13 12 17 17 C 1.31839 * 117.13008 * 179.97438 * 16 15 13 18 18 C 1.33753 * 114.45937 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 126.04081 * 180.02562 * 18 17 16 20 20 S 1.70964 * 124.90273 * 285.07012 * 15 13 12 21 21 O 1.43245 * 107.58529 * 21.35358 * 13 12 11 22 22 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09007 * 111.12756 * 37.43650 * 11 9 7 24 24 H 1.09006 * 111.12498 * 273.27785 * 11 9 7 25 25 H 1.09006 * 110.85287 * 207.67375 * 12 11 9 26 26 H 1.09004 * 111.02471 * 84.13526 * 12 11 9 27 27 H 1.07999 * 122.76730 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6286 -2.5776 -0.8907 11 6 2.2390 -3.6906 0.0730 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9659 1.6418 14 1 0.8147 -4.0166 2.6600 15 6 -0.9780 -4.5040 1.6008 16 7 -1.5257 -5.2095 2.5314 17 6 -2.7693 -5.6010 2.3359 18 6 -3.2992 -5.2029 1.1741 19 17 -4.9057 -5.5463 0.6132 20 16 -2.0810 -4.2614 0.3173 21 8 0.4439 -2.6088 1.1836 22 1 -0.4850 0.8400 -0.0004 23 1 3.0838 -3.4615 0.7226 24 1 2.5780 -3.9808 -0.9215 25 1 1.9281 -5.5073 1.2595 26 1 0.7415 -5.2882 -0.0679 27 1 -3.3149 -6.1948 3.0543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306662880.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:17 Heat of formation + Delta-G solvation = -25.764030 kcal Electronic energy + Delta-G solvation = -14904.450055 eV Core-core repulsion = 12200.362005 eV Total energy + Delta-G solvation = -2704.088051 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.97641 -39.76799 -37.86114 -34.78983 -32.82935 -32.16351 -29.80024 -27.25912 -25.37729 -22.85816 -22.20189 -21.19237 -19.35138 -18.62747 -17.47990 -16.80449 -16.67222 -16.02707 -15.82651 -15.20747 -14.96919 -14.33814 -13.92687 -13.60624 -13.33036 -13.23936 -12.79433 -12.50615 -12.39675 -12.31201 -12.10055 -11.85098 -11.63455 -11.07581 -10.86978 -10.69668 -10.31707 -10.13665 -9.76978 -8.13854 -6.33968 -0.54978 -0.16658 0.63031 1.09674 1.43106 1.44797 1.54845 1.60695 2.42512 2.86732 3.15606 3.61130 3.76852 3.99336 4.12382 4.17754 4.45681 4.61577 4.72785 4.90010 4.92752 5.12811 5.13699 5.56629 5.76484 6.16272 6.50828 6.53845 6.94892 7.42044 8.93529 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.005962 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.765661 B = 4695.276748 C = 5250.311036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.198 3.802 10 H 0.003 0.997 11 C -0.136 4.136 12 C -0.131 4.131 13 C 0.132 3.868 14 H 0.099 0.901 15 C 0.045 3.955 16 N -0.482 5.482 17 C 0.053 3.947 18 C -0.215 4.215 19 Cl 0.014 6.986 20 S 0.197 5.803 21 O -0.375 6.375 22 H 0.261 0.739 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -11.815 0.819 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.143 3.857 10 H 0.021 0.979 11 C -0.174 4.174 12 C -0.169 4.169 13 C 0.070 3.930 14 H 0.117 0.883 15 C -0.231 4.231 16 N -0.199 5.199 17 C -0.101 4.101 18 C -0.363 4.363 19 Cl 0.042 6.958 20 S 0.451 5.549 21 O -0.294 6.294 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -4.460 -11.141 0.354 12.006 hybrid contribution -0.525 0.406 0.546 0.860 sum -4.985 -10.735 0.900 11.870 Atomic orbital electron populations 1.70155 1.07573 1.27430 1.48322 1.25910 0.95565 1.02942 0.93266 0.85576 0.78771 0.78909 0.78464 1.19526 1.21313 1.18886 1.21529 0.93306 0.91287 1.53062 0.91216 1.20580 0.87431 0.94100 0.83597 0.97922 1.23253 0.98454 0.93950 1.01730 1.23129 0.97423 0.98090 0.98295 1.21318 0.85743 0.85256 1.00696 0.88345 1.27950 1.02566 0.99074 0.93539 1.66465 1.10574 1.14188 1.28643 1.22273 0.90069 1.01510 0.96237 1.27126 0.95507 1.11609 1.02077 1.98347 1.15533 1.93451 1.88446 1.84709 1.03610 1.45391 1.21204 1.88905 1.72370 1.21885 1.46226 0.92986 0.90656 0.89408 0.87320 0.90563 0.77263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.92 12.93 21.45 0.28 -52.64 15 2 C 0.03 1.43 5.42 84.66 0.46 1.89 15 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 7 C -0.55 -30.05 8.81 25.60 0.23 -29.82 15 8 H 0.07 3.60 7.77 -2.91 -0.02 3.58 15 9 C 0.20 9.73 3.27 30.51 0.10 9.83 15 10 H 0.00 0.17 8.14 -2.39 -0.02 0.15 15 11 C -0.14 -5.03 6.53 32.05 0.21 -4.82 15 12 C -0.13 -4.17 6.54 31.85 0.21 -3.96 15 13 C 0.13 5.15 4.05 30.32 0.12 5.28 15 14 H 0.10 3.72 8.14 -2.39 -0.02 3.70 15 15 C 0.05 1.67 6.22 88.53 0.55 2.22 15 16 N -0.48 -16.54 10.54 -191.36 -2.02 -18.56 15 17 C 0.05 1.52 11.32 83.67 0.95 2.47 15 18 C -0.21 -6.28 7.21 66.80 0.48 -5.79 15 19 Cl 0.01 0.34 29.31 -2.72 -0.08 0.26 15 20 S 0.20 6.92 22.99 -56.49 -1.30 5.62 15 21 O -0.37 -18.84 10.04 -148.98 -1.50 -20.34 15 22 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 23 H 0.07 2.73 8.05 -2.38 -0.02 2.71 15 24 H 0.09 2.87 8.14 -2.38 -0.02 2.85 15 25 H 0.11 2.77 8.14 -2.38 -0.02 2.75 15 26 H 0.08 2.29 7.84 -2.39 -0.02 2.27 15 27 H 0.21 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -62.78 268.62 1.91 -60.88 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.19 Total: 2.40 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.30 Total: -22.71 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.74 Total: -71.20 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.50 Total: -20.34 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 6.92 SS G_CDS: -1.30 Total: 5.62 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.26 kcal Total: -62.78 1.91 -60.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306662880.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.115 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds