Wall clock time and date at job start Mon Mar 30 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46845 * 134.53091 * 3 2 1 5 5 C 1.53006 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47103 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46693 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.46863 * 179.97438 * 7 6 5 9 9 C 1.39685 * 120.00341 * 180.02562 * 8 7 6 10 10 C 1.39337 * 119.94932 * 359.97438 * 9 8 7 11 11 C 1.38478 * 120.42823 * 180.02562 * 10 9 8 12 12 C 1.37688 * 120.32117 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89434 * 0.03305 * 12 11 10 14 14 C 1.41411 * 120.20601 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00317 * 24.35956 * 14 13 12 16 16 C 1.39935 * 119.99624 * 204.36087 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.84631 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.84653 * 16 14 13 19 19 H 1.48501 * 109.47546 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47184 * 119.99998 * 18 16 14 21 21 H 1.48498 * 109.47199 * 240.00043 * 18 16 14 22 22 C 1.38275 * 119.95691 * 179.97438 * 9 8 7 23 23 H 1.08996 * 109.47277 * 14.52692 * 3 2 1 24 24 H 1.09002 * 109.47115 * 254.52762 * 3 2 1 25 25 H 1.09004 * 109.47458 * 60.00057 * 4 3 2 26 26 H 1.08991 * 109.47344 * 299.99469 * 4 3 2 27 27 H 1.09004 * 109.46503 * 59.99979 * 5 4 3 28 28 H 1.09000 * 109.47230 * 300.00756 * 5 4 3 29 29 H 1.08993 * 109.47002 * 60.00336 * 6 5 4 30 30 H 1.08998 * 109.47097 * 299.99744 * 6 5 4 31 31 H 1.09002 * 109.47151 * 60.00453 * 7 6 5 32 32 H 1.09002 * 109.47344 * 299.99718 * 7 6 5 33 33 H 0.97003 * 120.00136 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.78413 * 0.02562 * 10 9 8 35 35 H 1.07997 * 119.84142 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.05363 * 179.97438 * 12 11 10 37 37 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 38 38 H 1.08008 * 120.15896 * 359.70358 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0125 -1.0283 5 6 4.6475 1.0137 -1.0279 6 6 5.1570 2.0260 -2.0558 7 6 6.6870 2.0267 -2.0558 8 7 7.1749 2.9955 -3.0404 9 6 8.5481 3.1749 -3.2228 10 6 9.4531 2.4320 -2.4673 11 6 10.8165 2.6022 -2.6397 12 6 11.2930 3.5078 -3.5608 13 6 10.3910 4.2655 -4.3311 14 6 10.8732 5.1978 -5.2787 15 1 11.8583 5.0753 -5.7039 16 6 10.0738 6.2793 -5.6654 17 7 9.0544 6.6363 -4.9271 18 14 10.4623 7.2134 -7.2357 19 1 11.6572 6.6160 -7.8843 20 1 9.3032 7.1307 -8.1605 21 1 10.7356 8.6363 -6.9106 22 6 9.0075 4.0892 -4.1528 23 1 2.9718 -0.9939 -0.2578 24 1 2.9712 0.2750 0.9904 25 1 2.7537 2.0072 -0.7705 26 1 2.7543 0.7383 -2.0187 27 1 5.0116 0.0191 -1.2855 28 1 5.0104 1.2881 -0.0374 29 1 4.7929 3.0204 -1.7977 30 1 4.7942 1.7519 -3.0464 31 1 7.0508 1.0322 -2.3142 32 1 7.0503 2.3006 -1.0652 33 1 6.5443 3.5121 -3.5663 34 1 9.0887 1.7189 -1.7426 35 1 11.5094 2.0217 -2.0487 36 1 12.3572 3.6373 -3.6914 37 1 8.5005 7.3862 -5.1950 38 1 8.3070 4.6621 -4.7424 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313411278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:11 Heat of formation + Delta-G solvation = 18.517556 kcal Electronic energy + Delta-G solvation = -17433.403438 eV Core-core repulsion = 14660.300410 eV Total energy + Delta-G solvation = -2773.103027 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -37.98592 -37.45024 -36.15009 -34.56744 -33.28757 -31.39674 -29.40814 -28.17899 -25.63977 -25.17833 -22.47916 -21.50855 -20.58366 -19.80236 -17.75376 -17.14952 -16.31920 -15.77492 -14.97260 -14.93464 -14.71624 -14.35485 -14.16392 -13.52322 -13.37179 -12.93276 -12.68560 -12.47131 -12.33321 -12.16864 -12.00131 -11.61596 -11.38491 -11.30963 -11.07397 -10.99431 -10.92168 -10.71629 -10.50900 -10.36081 -9.59683 -9.42079 -9.21864 -8.72933 -7.28832 -6.71090 -6.13693 -4.28904 2.43907 2.47636 2.87248 3.11303 3.17014 3.25261 3.35690 3.62801 3.99367 4.25460 4.57029 4.66048 4.74726 4.80827 5.00191 5.10290 5.33128 5.41083 5.52804 5.62913 5.77269 5.80053 5.88395 5.97296 6.26862 6.28785 6.29989 6.60845 6.90913 7.13850 7.16236 7.24721 7.40416 7.46997 7.84084 7.98791 8.13292 8.20118 8.51710 8.74147 8.86656 9.03740 9.14593 10.27606 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.003108 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.179767 B = 9006.759243 C = 9867.212018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.207 3.793 3 C -0.028 4.028 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.131 4.131 7 C 0.137 3.863 8 N -0.763 5.763 9 C 0.215 3.785 10 C -0.299 4.299 11 C -0.067 4.067 12 C -0.258 4.258 13 C 0.138 3.862 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.903 3.097 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.232 4.232 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.389 0.611 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.276 0.724 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 -8.518 6.180 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.111 4.111 3 C -0.068 4.068 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.169 4.169 7 C 0.011 3.989 8 N -0.397 5.397 9 C 0.116 3.884 10 C -0.322 4.322 11 C -0.086 4.086 12 C -0.278 4.278 13 C 0.134 3.866 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.418 5.418 18 Si 0.728 3.272 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.256 4.256 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.267 -8.486 6.354 14.758 hybrid contribution 0.315 0.739 -0.805 1.137 sum -9.952 -7.747 5.549 13.779 Atomic orbital electron populations 1.81241 1.13273 1.08818 1.08811 1.29361 0.95481 0.93105 0.93108 1.19392 0.81229 1.03118 1.03049 1.21574 0.96496 0.98833 0.98650 1.21490 0.93612 1.00110 1.00073 1.21765 0.95783 0.99778 0.99613 1.21028 0.92177 0.92889 0.92768 1.44429 1.04314 1.46137 1.44809 1.17652 0.81987 0.94169 0.94584 1.19879 0.92858 1.09890 1.09575 1.20289 0.94014 0.97103 0.97174 1.20861 0.97551 1.05798 1.03611 1.17336 0.90866 0.89301 0.89054 1.19582 1.01886 1.06905 1.21049 0.90564 1.25878 0.94071 0.97027 0.97012 1.69878 1.14573 1.23050 1.34328 0.86350 0.79588 0.79148 0.82112 1.18464 1.19863 1.20145 1.20725 0.96300 1.03944 1.04620 0.87254 0.87242 0.90970 0.90990 0.91164 0.91141 0.91463 0.91542 0.93475 0.93442 0.77808 0.89655 0.89648 0.89414 0.91288 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.21 18.54 42.15 0.78 -4.43 16 2 C 0.21 1.68 15.43 -20.76 -0.32 1.36 16 3 C -0.03 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.12 -0.63 5.17 -26.73 -0.14 -0.77 16 5 C -0.11 -0.75 5.21 -26.73 -0.14 -0.89 16 6 C -0.13 -1.29 5.33 -26.73 -0.14 -1.43 16 7 C 0.14 1.91 4.91 -4.04 -0.02 1.89 16 8 N -0.76 -14.05 5.73 -58.68 -0.34 -14.38 16 9 C 0.21 4.96 6.64 -83.86 -0.56 4.40 16 10 C -0.30 -6.73 9.32 -39.08 -0.36 -7.10 16 11 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 12 C -0.26 -6.51 9.79 -38.83 -0.38 -6.89 16 13 C 0.14 3.75 5.57 -106.85 -0.60 3.15 16 14 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 17 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 18 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 C -0.23 -6.05 8.53 -38.68 -0.33 -6.38 16 23 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 32 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 33 H 0.39 6.79 8.48 -40.82 -0.35 6.45 16 34 H 0.09 1.71 6.70 -52.49 -0.35 1.35 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 38 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.80 326.63 -8.66 -39.46 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.62 Total: 6.51 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -3.98 Total: -25.89 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.05 Total: -38.83 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.80 -8.66 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.977 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds