Wall clock time and date at job start Mon Mar 30 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46845 * 134.53091 * 3 2 1 5 5 C 1.53006 * 109.47103 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47103 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46693 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.46863 * 179.97438 * 7 6 5 9 9 C 1.39685 * 120.00341 * 180.02562 * 8 7 6 10 10 C 1.39337 * 119.94932 * 359.97438 * 9 8 7 11 11 C 1.38478 * 120.42823 * 180.02562 * 10 9 8 12 12 C 1.37688 * 120.32117 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89434 * 0.03305 * 12 11 10 14 14 C 1.41411 * 120.20601 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00317 * 24.35956 * 14 13 12 16 16 C 1.39935 * 119.99624 * 204.36087 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.84631 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.84653 * 16 14 13 19 19 H 1.48501 * 109.47546 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47184 * 119.99998 * 18 16 14 21 21 H 1.48498 * 109.47199 * 240.00043 * 18 16 14 22 22 C 1.38275 * 119.95691 * 179.97438 * 9 8 7 23 23 H 1.08996 * 109.47277 * 14.52692 * 3 2 1 24 24 H 1.09002 * 109.47115 * 254.52762 * 3 2 1 25 25 H 1.09004 * 109.47458 * 60.00057 * 4 3 2 26 26 H 1.08991 * 109.47344 * 299.99469 * 4 3 2 27 27 H 1.09004 * 109.46503 * 59.99979 * 5 4 3 28 28 H 1.09000 * 109.47230 * 300.00756 * 5 4 3 29 29 H 1.08993 * 109.47002 * 60.00336 * 6 5 4 30 30 H 1.08998 * 109.47097 * 299.99744 * 6 5 4 31 31 H 1.09002 * 109.47151 * 60.00453 * 7 6 5 32 32 H 1.09002 * 109.47344 * 299.99718 * 7 6 5 33 33 H 0.97003 * 120.00136 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.78413 * 0.02562 * 10 9 8 35 35 H 1.07997 * 119.84142 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.05363 * 179.97438 * 12 11 10 37 37 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 38 38 H 1.08008 * 120.15896 * 359.70358 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0125 -1.0283 5 6 4.6475 1.0137 -1.0279 6 6 5.1570 2.0260 -2.0558 7 6 6.6870 2.0267 -2.0558 8 7 7.1749 2.9955 -3.0404 9 6 8.5481 3.1749 -3.2228 10 6 9.4531 2.4320 -2.4673 11 6 10.8165 2.6022 -2.6397 12 6 11.2930 3.5078 -3.5608 13 6 10.3910 4.2655 -4.3311 14 6 10.8732 5.1978 -5.2787 15 1 11.8583 5.0753 -5.7039 16 6 10.0738 6.2793 -5.6654 17 7 9.0544 6.6363 -4.9271 18 14 10.4623 7.2134 -7.2357 19 1 11.6572 6.6160 -7.8843 20 1 9.3032 7.1307 -8.1605 21 1 10.7356 8.6363 -6.9106 22 6 9.0075 4.0892 -4.1528 23 1 2.9718 -0.9939 -0.2578 24 1 2.9712 0.2750 0.9904 25 1 2.7537 2.0072 -0.7705 26 1 2.7543 0.7383 -2.0187 27 1 5.0116 0.0191 -1.2855 28 1 5.0104 1.2881 -0.0374 29 1 4.7929 3.0204 -1.7977 30 1 4.7942 1.7519 -3.0464 31 1 7.0508 1.0322 -2.3142 32 1 7.0503 2.3006 -1.0652 33 1 6.5443 3.5121 -3.5663 34 1 9.0887 1.7189 -1.7426 35 1 11.5094 2.0217 -2.0487 36 1 12.3572 3.6373 -3.6914 37 1 8.5005 7.3862 -5.1950 38 1 8.3070 4.6621 -4.7424 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313411278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:09 Heat of formation + Delta-G solvation = 1.656450 kcal Electronic energy + Delta-G solvation = -17434.134590 eV Core-core repulsion = 14660.300410 eV Total energy + Delta-G solvation = -2773.834180 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.62950 -38.18075 -37.23519 -35.82515 -34.94483 -32.40822 -31.30998 -29.51186 -27.10844 -26.69215 -23.60324 -22.66859 -21.75173 -21.53404 -19.03800 -18.28172 -17.48945 -16.86192 -16.51350 -16.41086 -15.93874 -15.73097 -14.96287 -14.62683 -14.46822 -14.37426 -14.01215 -13.92311 -13.50939 -13.27716 -13.10161 -12.77226 -12.75996 -12.65083 -12.42006 -12.08302 -11.89682 -11.80449 -11.77177 -11.41735 -11.28786 -11.26068 -11.03336 -10.42118 -9.22091 -8.60164 -7.85269 -6.29579 1.10235 1.36802 1.39656 1.54180 1.59440 1.82854 1.88003 2.24451 2.82602 2.90743 3.18575 3.89615 4.03881 4.13092 4.17378 4.39817 4.54006 4.66374 4.67524 4.82393 4.85676 4.93256 4.94974 5.03905 5.09926 5.17476 5.22722 5.29178 5.35236 5.49199 5.53046 5.58178 5.66240 6.00334 6.15131 6.24876 6.30963 6.61654 6.67366 6.97853 7.08778 7.13003 7.29705 8.40279 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.003108 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.179767 B = 9006.759243 C = 9867.212018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.235 3.765 3 C -0.022 4.022 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.131 3.869 8 N -0.759 5.759 9 C 0.218 3.782 10 C -0.300 4.300 11 C -0.064 4.064 12 C -0.287 4.287 13 C 0.105 3.895 14 C -0.504 4.504 15 H 0.070 0.930 16 C 0.036 3.964 17 N -0.822 5.822 18 Si 0.979 3.021 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.266 1.266 22 C -0.262 4.262 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.391 0.609 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.284 0.716 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 -9.630 7.016 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.061 4.061 4 C -0.151 4.151 5 C -0.145 4.145 6 C -0.162 4.162 7 C 0.008 3.992 8 N -0.391 5.391 9 C 0.116 3.884 10 C -0.323 4.323 11 C -0.082 4.082 12 C -0.308 4.308 13 C 0.103 3.897 14 C -0.534 4.534 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.800 3.200 19 H -0.184 1.184 20 H -0.189 1.189 21 H -0.191 1.191 22 C -0.287 4.287 23 H 0.155 0.845 24 H 0.154 0.846 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.224 0.776 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.547 -9.621 7.216 15.996 hybrid contribution 0.384 1.004 -0.963 1.443 sum -10.163 -8.617 6.253 14.719 Atomic orbital electron populations 1.81269 1.15647 1.11331 1.11314 1.30112 0.96128 0.90917 0.90924 1.19651 0.78268 1.04192 1.04023 1.21482 0.95753 0.98993 0.98917 1.21433 0.94000 0.99623 0.99422 1.21721 0.92723 1.00856 1.00922 1.21315 0.94890 0.91702 0.91338 1.44637 1.02631 1.46571 1.45296 1.17801 0.84350 0.92903 0.93305 1.20253 0.92607 1.09870 1.09577 1.20678 0.95106 0.96191 0.96254 1.21025 0.97544 1.07238 1.04974 1.17743 0.91966 0.90151 0.89884 1.19818 1.02465 1.08397 1.22701 0.91144 1.26708 0.93662 0.97481 0.99984 1.69930 1.15382 1.23721 1.35803 0.85218 0.79452 0.77784 0.77554 1.18380 1.18919 1.19111 1.20670 0.95797 1.05727 1.06460 0.84526 0.84620 0.91623 0.91477 0.89791 0.89990 0.91888 0.91609 0.92927 0.93331 0.77576 0.86512 0.86244 0.89320 0.90513 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.93 18.54 20.01 0.37 -11.56 16 2 C 0.24 3.38 15.43 89.44 1.38 4.76 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.11 -0.86 5.17 30.60 0.16 -0.70 16 5 C -0.11 -0.98 5.21 30.60 0.16 -0.82 16 6 C -0.12 -2.12 5.33 30.60 0.16 -1.96 16 7 C 0.13 3.32 4.91 86.38 0.42 3.75 16 8 N -0.76 -27.14 5.73 -339.57 -1.95 -29.09 16 9 C 0.22 9.98 6.64 38.16 0.25 10.23 16 10 C -0.30 -12.95 9.32 22.59 0.21 -12.74 16 11 C -0.06 -2.85 10.02 22.20 0.22 -2.63 16 12 C -0.29 -14.77 9.79 22.75 0.22 -14.55 16 13 C 0.11 5.95 5.57 -21.31 -0.12 5.83 16 14 C -0.50 -28.33 9.05 23.46 0.21 -28.12 16 15 H 0.07 3.86 7.91 -2.91 -0.02 3.83 16 16 C 0.04 1.88 5.14 85.25 0.44 2.32 16 17 N -0.82 -43.93 10.95 21.82 0.24 -43.69 16 18 Si 0.98 39.27 29.59 68.60 2.03 41.30 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 22 C -0.26 -14.07 8.53 22.85 0.19 -13.87 16 23 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.31 7.94 -2.39 -0.02 1.29 16 32 H 0.05 1.25 7.94 -2.39 -0.02 1.23 16 33 H 0.39 13.53 8.48 -92.71 -0.79 12.75 16 34 H 0.12 4.25 6.70 -2.91 -0.02 4.23 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 38 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -69.99 326.63 5.04 -64.95 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.26 Total: 26.52 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 4.08 Total: -48.43 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -1.34 Total: -84.34 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -69.99 5.04 -64.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313411278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.602 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds