Wall clock time and date at job start Mon Mar 30 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99500 * 2 1 4 4 C 1.53005 * 110.01388 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46754 * 178.60586 * 4 3 2 6 6 Si 1.63105 * 113.99570 * 237.51867 * 5 4 3 7 7 C 1.86298 * 109.47129 * 44.50590 * 6 5 4 8 8 C 1.86304 * 109.46802 * 164.50046 * 6 5 4 9 9 C 1.86295 * 109.47352 * 284.50216 * 6 5 4 10 10 C 1.50699 * 109.46614 * 298.60232 * 4 3 2 11 11 N 1.27944 * 120.00479 * 343.37764 * 10 4 3 12 12 Si 1.86799 * 119.99643 * 163.37414 * 10 4 3 13 13 H 1.48504 * 109.46933 * 84.49181 * 12 10 4 14 14 H 1.48498 * 109.47367 * 204.49090 * 12 10 4 15 15 H 1.48501 * 109.47352 * 324.49475 * 12 10 4 16 16 C 1.54272 * 110.07017 * 301.40987 * 3 2 1 17 17 C 1.54892 * 104.19330 * 95.70131 * 16 3 2 18 18 C 1.54886 * 102.74827 * 37.94378 * 17 16 3 19 19 C 1.53872 * 110.03830 * 58.60356 * 3 2 1 20 20 H 1.08996 * 109.47674 * 300.00716 * 1 2 3 21 21 H 1.09001 * 109.46709 * 60.01114 * 1 2 3 22 22 H 1.09002 * 109.46538 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47287 * 58.60285 * 4 3 2 24 24 H 1.08998 * 109.47211 * 59.99583 * 7 6 5 25 25 H 1.08992 * 109.47105 * 179.97438 * 7 6 5 26 26 H 1.09007 * 109.47069 * 299.99906 * 7 6 5 27 27 H 1.09007 * 109.46998 * 60.00430 * 8 6 5 28 28 H 1.08992 * 109.46820 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.47341 * 300.00297 * 8 6 5 30 30 H 1.09001 * 109.47366 * 66.82369 * 9 6 5 31 31 H 1.08996 * 109.47108 * 186.82470 * 9 6 5 32 32 H 1.09003 * 109.47075 * 306.82246 * 9 6 5 33 33 H 0.96998 * 120.00046 * 179.97438 * 11 10 4 34 34 H 1.08997 * 110.48288 * 214.38106 * 16 3 2 35 35 H 1.09001 * 110.48802 * 337.02433 * 16 3 2 36 36 H 1.08998 * 110.75661 * 279.62362 * 17 16 3 37 37 H 1.09001 * 110.91014 * 156.32699 * 17 16 3 38 38 H 1.09001 * 110.48382 * 203.38256 * 18 17 16 39 39 H 1.09000 * 110.49128 * 80.73238 * 18 17 16 40 40 H 1.09003 * 110.02715 * 359.94809 * 19 3 2 41 41 H 1.08995 * 110.03196 * 121.38049 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5365 1.1993 0.0006 5 8 4.1052 2.5099 -0.0321 6 14 5.1016 2.7691 -1.2971 7 6 4.3224 2.0960 -2.8496 8 6 5.3943 4.5987 -1.4922 9 6 6.7262 1.9091 -0.9944 10 6 3.9898 0.4861 1.2484 11 7 3.1910 0.3615 2.2401 12 14 5.7179 -0.2162 1.3472 13 1 6.6616 0.8491 1.7715 14 1 5.7461 -1.3247 2.3349 15 1 6.1200 -0.7311 0.0136 16 6 1.5356 2.0963 -1.2367 17 6 0.3350 2.9267 -0.7187 18 6 0.7907 3.3355 0.7040 19 6 1.5366 2.0935 1.2339 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 3.8622 0.6398 -0.8763 24 1 3.3718 2.5992 -3.0267 25 1 4.9880 2.2696 -3.6950 26 1 4.1510 1.0255 -2.7355 27 1 5.8503 4.9926 -0.5838 28 1 6.0605 4.7719 -2.3373 29 1 4.4438 5.1019 -1.6693 30 1 6.5728 0.8300 -1.0009 31 1 7.4326 2.1804 -1.7789 32 1 7.1237 2.2138 -0.0263 33 1 3.4827 -0.0979 3.0430 34 1 2.3273 2.7535 -1.5961 35 1 1.2163 1.4152 -2.0256 36 1 -0.5668 2.3162 -0.6751 37 1 0.1739 3.8073 -1.3406 38 1 -0.0722 3.5587 1.3315 39 1 1.4622 4.1929 0.6580 40 1 0.8627 1.4803 1.8323 41 1 2.3941 2.4001 1.8328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319110220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:58 Heat of formation + Delta-G solvation = -96.843716 kcal Electronic energy + Delta-G solvation = -19924.983872 eV Core-core repulsion = 17156.827442 eV Total energy + Delta-G solvation = -2768.156430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23070 -38.08551 -36.00578 -35.69367 -30.73905 -29.96409 -29.44372 -28.64165 -28.36605 -27.04447 -26.41603 -21.78310 -21.45645 -20.15612 -18.59896 -17.80645 -17.16959 -16.48881 -16.07634 -15.84547 -15.06274 -14.99208 -14.70372 -14.30551 -14.26569 -14.12945 -13.85630 -13.61429 -13.38735 -13.32031 -13.29656 -13.05346 -12.84591 -12.63706 -12.39412 -12.18017 -11.93427 -11.88693 -11.69976 -11.65399 -11.45367 -11.21656 -11.04106 -10.76714 -10.55061 -10.19385 -9.59654 0.67484 1.03977 1.32820 1.34174 1.78046 1.80184 1.81117 1.93869 2.36501 3.05501 3.50625 3.64311 3.82087 3.96031 4.12384 4.36825 4.53193 4.60294 4.61824 4.63374 4.67130 4.67643 4.70218 4.71797 4.72859 4.77921 4.83409 4.86456 4.94404 4.97675 5.05160 5.18621 5.23107 5.30418 5.37132 5.44536 5.53217 5.55867 5.64775 5.78406 6.48829 6.90898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.121 3.879 4 C 0.165 3.835 5 O -0.602 6.602 6 Si 1.245 2.755 7 C -0.514 4.514 8 C -0.465 4.465 9 C -0.525 4.525 10 C -0.011 4.011 11 N -0.586 5.586 12 Si 0.907 3.093 13 H -0.229 1.229 14 H -0.246 1.246 15 H -0.227 1.227 16 C -0.159 4.159 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.119 4.119 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.336 0.664 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 0.305 -1.310 1.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.081 3.919 4 C 0.107 3.893 5 O -0.559 6.559 6 Si 1.382 2.618 7 C -0.616 4.616 8 C -0.572 4.572 9 C -0.627 4.627 10 C -0.261 4.261 11 N -0.201 5.201 12 Si 0.723 3.277 13 H -0.152 1.152 14 H -0.169 1.169 15 H -0.149 1.149 16 C -0.196 4.196 17 C -0.168 4.168 18 C -0.168 4.168 19 C -0.156 4.156 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.327 0.186 -0.837 0.918 hybrid contribution 0.532 -0.185 -0.170 0.588 sum 0.859 0.001 -1.007 1.324 Atomic orbital electron populations 1.22845 0.81188 1.02255 1.00439 1.87849 1.19650 1.26544 1.94904 1.22047 0.91232 0.83620 0.94987 1.20377 0.92252 0.81522 0.95132 1.85394 1.69496 1.32582 1.68467 0.77479 0.60595 0.67186 0.56514 1.27180 1.08342 1.07307 1.18807 1.26288 1.05427 1.20367 1.05086 1.27254 1.20772 1.08887 1.05770 1.30287 1.03667 0.96282 0.95862 1.68261 1.37238 1.11952 1.02630 0.86237 0.76392 0.81531 0.83547 1.15199 1.16891 1.14922 1.23200 0.99174 0.99482 0.97790 1.22650 0.97522 0.99669 0.96966 1.22457 0.99754 0.98819 0.95725 1.22558 1.01027 0.95206 0.96858 0.93478 0.93702 0.90063 0.89893 0.90295 0.90432 0.90904 0.90663 0.90440 0.90672 0.91049 0.90152 0.90536 0.84682 0.89777 0.90783 0.91374 0.91516 0.92068 0.91312 0.90860 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 9.42 101.05 0.95 0.97 16 2 O -0.37 -0.94 9.73 -35.23 -0.34 -1.28 16 3 C 0.12 0.19 0.56 -89.50 -0.05 0.14 16 4 C 0.17 0.15 1.08 -27.88 -0.03 0.12 16 5 O -0.60 -0.14 7.11 -35.23 -0.25 -0.39 16 6 Si 1.24 -2.03 11.40 -169.99 -1.94 -3.97 16 7 C -0.51 0.82 7.88 101.05 0.80 1.61 16 8 C -0.47 0.59 8.65 101.05 0.87 1.47 16 9 C -0.53 0.48 7.15 101.05 0.72 1.21 16 10 C -0.01 -0.01 4.74 -13.90 -0.07 -0.08 16 11 N -0.59 -0.91 10.19 56.23 0.57 -0.33 16 12 Si 0.91 0.19 25.85 -169.99 -4.39 -4.20 16 13 H -0.23 -0.09 6.83 56.52 0.39 0.30 16 14 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 15 H -0.23 0.08 6.15 56.52 0.35 0.42 16 16 C -0.16 -0.07 4.87 -25.07 -0.12 -0.19 16 17 C -0.13 -0.02 6.38 -24.74 -0.16 -0.18 16 18 C -0.13 -0.12 6.83 -25.07 -0.17 -0.29 16 19 C -0.12 -0.22 3.83 -25.61 -0.10 -0.32 16 20 H 0.05 0.03 6.30 -51.93 -0.33 -0.30 16 21 H 0.04 0.00 5.45 -51.93 -0.28 -0.29 16 22 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 23 H 0.08 -0.06 5.30 -51.93 -0.27 -0.34 16 24 H 0.08 -0.12 6.14 -51.93 -0.32 -0.44 16 25 H 0.08 -0.16 7.96 -51.93 -0.41 -0.57 16 26 H 0.07 -0.12 6.80 -51.93 -0.35 -0.47 16 27 H 0.07 -0.07 7.96 -51.92 -0.41 -0.49 16 28 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.06 5.24 -51.93 -0.27 -0.33 16 31 H 0.08 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.08 -0.05 7.43 -51.93 -0.39 -0.43 16 33 H 0.34 -0.05 8.23 -40.82 -0.34 -0.38 16 34 H 0.08 -0.04 3.73 -51.93 -0.19 -0.23 16 35 H 0.07 0.02 7.57 -51.93 -0.39 -0.37 16 36 H 0.07 -0.01 6.06 -51.93 -0.31 -0.32 16 37 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 38 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.07 0.19 6.30 -51.93 -0.33 -0.14 16 41 H 0.09 0.25 6.21 -51.93 -0.32 -0.08 16 LS Contribution 298.92 15.07 4.50 4.50 Total: 0.00 -2.73 298.92 -5.93 -8.66 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -6.73 Total: -7.45 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 2.65 Total: 4.46 kcal Atomic # 7 Polarization: -0.91 SS G_CDS: 0.57 Total: -0.33 kcal Atomic # 8 Polarization: -1.07 SS G_CDS: -0.59 Total: -1.67 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -6.33 Total: -8.17 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -2.73 -5.93 -8.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319110220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.185 kcal (2) G-P(sol) polarization free energy of solvation -2.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds