Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99500 * 2 1 4 4 C 1.53005 * 110.01388 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46754 * 178.60586 * 4 3 2 6 6 Si 1.63105 * 113.99570 * 237.51867 * 5 4 3 7 7 C 1.86298 * 109.47129 * 44.50590 * 6 5 4 8 8 C 1.86304 * 109.46802 * 164.50046 * 6 5 4 9 9 C 1.86295 * 109.47352 * 284.50216 * 6 5 4 10 10 C 1.50699 * 109.46614 * 298.60232 * 4 3 2 11 11 N 1.27944 * 120.00479 * 343.37764 * 10 4 3 12 12 Si 1.86799 * 119.99643 * 163.37414 * 10 4 3 13 13 H 1.48504 * 109.46933 * 84.49181 * 12 10 4 14 14 H 1.48498 * 109.47367 * 204.49090 * 12 10 4 15 15 H 1.48501 * 109.47352 * 324.49475 * 12 10 4 16 16 C 1.54272 * 110.07017 * 301.40987 * 3 2 1 17 17 C 1.54892 * 104.19330 * 95.70131 * 16 3 2 18 18 C 1.54886 * 102.74827 * 37.94378 * 17 16 3 19 19 C 1.53872 * 110.03830 * 58.60356 * 3 2 1 20 20 H 1.08996 * 109.47674 * 300.00716 * 1 2 3 21 21 H 1.09001 * 109.46709 * 60.01114 * 1 2 3 22 22 H 1.09002 * 109.46538 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47287 * 58.60285 * 4 3 2 24 24 H 1.08998 * 109.47211 * 59.99583 * 7 6 5 25 25 H 1.08992 * 109.47105 * 179.97438 * 7 6 5 26 26 H 1.09007 * 109.47069 * 299.99906 * 7 6 5 27 27 H 1.09007 * 109.46998 * 60.00430 * 8 6 5 28 28 H 1.08992 * 109.46820 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.47341 * 300.00297 * 8 6 5 30 30 H 1.09001 * 109.47366 * 66.82369 * 9 6 5 31 31 H 1.08996 * 109.47108 * 186.82470 * 9 6 5 32 32 H 1.09003 * 109.47075 * 306.82246 * 9 6 5 33 33 H 0.96998 * 120.00046 * 179.97438 * 11 10 4 34 34 H 1.08997 * 110.48288 * 214.38106 * 16 3 2 35 35 H 1.09001 * 110.48802 * 337.02433 * 16 3 2 36 36 H 1.08998 * 110.75661 * 279.62362 * 17 16 3 37 37 H 1.09001 * 110.91014 * 156.32699 * 17 16 3 38 38 H 1.09001 * 110.48382 * 203.38256 * 18 17 16 39 39 H 1.09000 * 110.49128 * 80.73238 * 18 17 16 40 40 H 1.09003 * 110.02715 * 359.94809 * 19 3 2 41 41 H 1.08995 * 110.03196 * 121.38049 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5365 1.1993 0.0006 5 8 4.1052 2.5099 -0.0321 6 14 5.1016 2.7691 -1.2971 7 6 4.3224 2.0960 -2.8496 8 6 5.3943 4.5987 -1.4922 9 6 6.7262 1.9091 -0.9944 10 6 3.9898 0.4861 1.2484 11 7 3.1910 0.3615 2.2401 12 14 5.7179 -0.2162 1.3472 13 1 6.6616 0.8491 1.7715 14 1 5.7461 -1.3247 2.3349 15 1 6.1200 -0.7311 0.0136 16 6 1.5356 2.0963 -1.2367 17 6 0.3350 2.9267 -0.7187 18 6 0.7907 3.3355 0.7040 19 6 1.5366 2.0935 1.2339 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 3.8622 0.6398 -0.8763 24 1 3.3718 2.5992 -3.0267 25 1 4.9880 2.2696 -3.6950 26 1 4.1510 1.0255 -2.7355 27 1 5.8503 4.9926 -0.5838 28 1 6.0605 4.7719 -2.3373 29 1 4.4438 5.1019 -1.6693 30 1 6.5728 0.8300 -1.0009 31 1 7.4326 2.1804 -1.7789 32 1 7.1237 2.2138 -0.0263 33 1 3.4827 -0.0979 3.0430 34 1 2.3273 2.7535 -1.5961 35 1 1.2163 1.4152 -2.0256 36 1 -0.5668 2.3162 -0.6751 37 1 0.1739 3.8073 -1.3406 38 1 -0.0722 3.5587 1.3315 39 1 1.4622 4.1929 0.6580 40 1 0.8627 1.4803 1.8323 41 1 2.3941 2.4001 1.8328 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319110220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = -87.563963 kcal Electronic energy + Delta-G solvation = -19924.581472 eV Core-core repulsion = 17156.827442 eV Total energy + Delta-G solvation = -2767.754030 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28079 -38.10749 -36.06232 -35.74792 -30.76171 -29.94378 -29.38969 -28.53941 -28.25926 -27.08311 -26.46434 -21.83923 -21.49459 -20.21868 -18.62939 -17.83105 -17.19728 -16.52256 -16.12760 -15.88162 -15.09815 -15.03664 -14.69094 -14.24299 -14.20315 -14.05492 -13.83392 -13.63139 -13.30849 -13.22783 -13.18936 -13.04270 -12.82732 -12.62863 -12.37552 -12.15701 -11.94887 -11.92179 -11.74913 -11.70012 -11.47673 -11.26010 -11.07821 -10.66279 -10.47854 -10.27542 -9.63257 0.65925 1.00868 1.31232 1.39605 1.78372 1.81113 1.91005 2.06187 2.45880 3.02832 3.49092 3.62184 3.78088 3.92644 4.10893 4.33845 4.51177 4.55963 4.64058 4.69482 4.72863 4.75978 4.77878 4.80310 4.81151 4.82059 4.84335 4.87619 4.91017 4.96769 5.02027 5.16066 5.24775 5.28529 5.32693 5.54183 5.55395 5.63215 5.65646 5.69541 6.42180 6.89889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.117 3.883 4 C 0.155 3.845 5 O -0.612 6.612 6 Si 1.268 2.732 7 C -0.518 4.518 8 C -0.473 4.473 9 C -0.536 4.536 10 C -0.015 4.015 11 N -0.603 5.603 12 Si 0.920 3.080 13 H -0.233 1.233 14 H -0.254 1.254 15 H -0.215 1.215 16 C -0.159 4.159 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.115 4.115 20 H 0.044 0.956 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.341 0.659 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 0.361 -2.220 2.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.305 6.305 3 C 0.077 3.923 4 C 0.098 3.902 5 O -0.569 6.569 6 Si 1.405 2.595 7 C -0.620 4.620 8 C -0.579 4.579 9 C -0.637 4.637 10 C -0.265 4.265 11 N -0.219 5.219 12 Si 0.736 3.264 13 H -0.156 1.156 14 H -0.177 1.177 15 H -0.137 1.137 16 C -0.197 4.197 17 C -0.167 4.167 18 C -0.167 4.167 19 C -0.153 4.153 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.443 0.247 -1.748 1.820 hybrid contribution 0.498 -0.190 0.144 0.552 sum 0.941 0.057 -1.603 1.860 Atomic orbital electron populations 1.22932 0.80545 1.02845 1.00704 1.87822 1.20492 1.27204 1.94992 1.22129 0.91710 0.83344 0.95126 1.20535 0.92059 0.82011 0.95645 1.85389 1.69798 1.32335 1.69367 0.77074 0.59776 0.66575 0.56052 1.27192 1.08534 1.07409 1.18910 1.26375 1.05572 1.20770 1.05211 1.27368 1.21502 1.09035 1.05824 1.30521 1.04120 0.96047 0.95822 1.68273 1.37914 1.12558 1.03149 0.86057 0.75542 0.80972 0.83858 1.15616 1.17749 1.13712 1.23229 0.99490 0.99562 0.97395 1.22660 0.97569 1.00017 0.96439 1.22450 0.99655 0.98306 0.96335 1.22478 1.00342 0.95508 0.96958 0.93784 0.92831 0.89377 0.88354 0.90184 0.89771 0.90749 0.91137 0.89683 0.90727 0.91031 0.89376 0.91024 0.84103 0.88964 0.90435 0.91084 0.90711 0.91965 0.91489 0.91941 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 9.42 113.37 1.07 1.11 16 2 O -0.39 -2.06 9.73 -148.98 -1.45 -3.51 16 3 C 0.12 0.39 0.56 -10.07 -0.01 0.38 16 4 C 0.16 0.30 1.08 29.85 0.03 0.33 16 5 O -0.61 -0.37 7.11 -148.98 -1.06 -1.43 16 6 Si 1.27 -4.56 11.40 68.60 0.78 -3.77 16 7 C -0.52 2.11 7.88 113.37 0.89 3.00 16 8 C -0.47 1.30 8.65 113.37 0.98 2.28 16 9 C -0.54 1.17 7.15 113.37 0.81 1.98 16 10 C -0.02 -0.04 4.74 88.67 0.42 0.38 16 11 N -0.60 -2.51 10.19 24.11 0.25 -2.26 16 12 Si 0.92 0.56 25.85 68.60 1.77 2.33 16 13 H -0.23 -0.26 6.83 99.48 0.68 0.42 16 14 H -0.25 -0.45 7.11 99.48 0.71 0.26 16 15 H -0.22 0.29 6.15 99.48 0.61 0.90 16 16 C -0.16 -0.07 4.87 31.67 0.15 0.08 16 17 C -0.13 -0.01 6.38 31.88 0.20 0.20 16 18 C -0.13 -0.28 6.83 31.67 0.22 -0.06 16 19 C -0.12 -0.53 3.83 31.32 0.12 -0.41 16 20 H 0.04 0.09 6.30 -2.39 -0.02 0.07 16 21 H 0.05 -0.02 5.45 -2.39 -0.01 -0.04 16 22 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 23 H 0.10 -0.18 5.30 -2.39 -0.01 -0.20 16 24 H 0.08 -0.33 6.14 -2.39 -0.01 -0.34 16 25 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 26 H 0.07 -0.31 6.80 -2.38 -0.02 -0.33 16 27 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 28 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 29 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.16 5.24 -2.39 -0.01 -0.17 16 31 H 0.09 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.08 7.43 -2.39 -0.02 -0.10 16 33 H 0.34 0.34 8.23 -92.71 -0.76 -0.43 16 34 H 0.09 -0.13 3.73 -2.39 -0.01 -0.14 16 35 H 0.08 -0.01 7.57 -2.39 -0.02 -0.03 16 36 H 0.07 -0.04 6.06 -2.39 -0.01 -0.05 16 37 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.06 0.40 6.30 -2.39 -0.02 0.39 16 41 H 0.07 0.52 6.21 -2.39 -0.01 0.50 16 Total: 0.00 -6.25 298.92 6.08 -0.17 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: 0.89 Total: -0.79 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 4.89 Total: 9.27 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: 0.25 Total: -2.26 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -2.51 Total: -4.94 kcal Atomic # 14 Polarization: -4.00 SS G_CDS: 2.56 Total: -1.44 kcal Total: -6.25 6.08 -0.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319110220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.393 kcal (2) G-P(sol) polarization free energy of solvation -6.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds