Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48473 * 2 1 4 4 C 1.53083 * 109.47983 * 120.03847 * 2 1 3 5 5 C 1.53179 * 109.16530 * 62.37041 * 4 2 1 6 6 H 1.08999 * 109.61912 * 297.06640 * 5 4 2 7 7 C 1.52998 * 109.54362 * 176.84721 * 5 4 2 8 8 S 1.81406 * 109.47315 * 175.44353 * 7 5 4 9 9 C 1.81397 * 103.00214 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46812 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00138 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 119.99815 * 16 14 12 19 19 H 1.48498 * 109.47295 * 240.00422 * 16 14 12 20 20 C 1.53173 * 109.03535 * 56.98302 * 5 4 2 21 21 C 1.53093 * 109.16152 * 303.01678 * 20 5 4 22 22 O 1.42903 * 109.41286 * 57.61347 * 21 20 5 23 23 H 1.08998 * 109.47716 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47088 * 300.02549 * 1 2 3 25 25 H 1.09007 * 109.47544 * 60.01999 * 1 2 3 26 26 H 1.09006 * 109.52569 * 302.46695 * 4 2 1 27 27 H 1.09000 * 109.52660 * 182.27837 * 4 2 1 28 28 H 1.09003 * 109.47583 * 55.44629 * 7 5 4 29 29 H 1.08998 * 109.47660 * 295.44791 * 7 5 4 30 30 H 1.09000 * 109.46828 * 60.00043 * 9 8 7 31 31 H 1.08994 * 109.47200 * 300.00169 * 9 8 7 32 32 H 1.09000 * 109.47115 * 60.00497 * 10 9 8 33 33 H 1.08994 * 109.47558 * 300.00229 * 10 9 8 34 34 H 1.08996 * 109.46961 * 60.00901 * 11 10 9 35 35 H 1.08994 * 109.47402 * 300.00515 * 11 10 9 36 36 H 0.97000 * 119.99651 * 0.02562 * 15 14 12 37 37 H 1.08996 * 109.52300 * 62.92533 * 20 5 4 38 38 H 1.09007 * 109.51963 * 183.05446 * 20 5 4 39 39 H 1.08995 * 109.48104 * 177.59195 * 21 20 5 40 40 H 1.08997 * 109.48335 * 297.61834 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7224 1.2494 5 6 1.5756 -2.1815 1.2118 6 1 0.4867 -2.2195 1.2413 7 6 2.1466 -2.9318 2.4167 8 16 1.4875 -4.6216 2.4447 9 6 2.2666 -5.3392 3.9173 10 6 1.8041 -6.7881 4.0841 11 6 2.4618 -7.3935 5.3259 12 6 2.0067 -8.8209 5.4898 13 1 1.3178 -9.2531 4.7792 14 6 2.4700 -9.5749 6.5470 15 7 3.3085 -9.0485 7.4127 16 14 1.9055 -11.3439 6.7507 17 1 0.9689 -11.6941 5.6528 18 1 3.0828 -12.2478 6.7035 19 1 1.2164 -11.4963 8.0573 20 6 2.0763 -2.8322 -0.0813 21 6 1.5644 -2.0283 -1.2793 22 8 2.0065 -0.6741 -1.1665 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5143 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 1.6420 -0.2361 2.1398 27 1 3.1297 -0.6877 1.2708 28 1 1.8627 -2.4159 3.3340 29 1 3.2334 -2.9669 2.3413 30 1 1.9800 -4.7632 4.7972 31 1 3.3503 -5.3141 3.8038 32 1 2.0904 -7.3644 3.2043 33 1 0.7204 -6.8128 4.1978 34 1 2.1758 -6.8174 6.2059 35 1 3.5454 -7.3688 5.2118 36 1 3.6008 -8.1296 7.3075 37 1 3.1662 -2.8400 -0.0868 38 1 1.7043 -3.8551 -0.1420 39 1 1.9528 -2.4619 -2.2008 40 1 0.4748 -2.0549 -1.2962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362457300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -91.412603 kcal Electronic energy + Delta-G solvation = -16891.429106 eV Core-core repulsion = 14216.710349 eV Total energy + Delta-G solvation = -2674.718757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.09295 -35.12979 -34.73138 -32.52462 -32.09745 -29.41452 -27.38801 -26.94473 -23.78871 -23.26580 -22.36372 -20.54963 -19.52319 -16.89192 -16.66875 -16.37334 -15.96634 -15.28350 -14.82896 -14.69853 -14.34155 -13.76519 -13.63243 -13.44068 -13.30613 -12.69852 -12.50858 -12.38559 -12.00716 -11.87213 -11.65156 -11.52495 -11.25871 -11.00761 -10.84932 -10.75913 -10.33869 -10.13310 -9.94744 -9.88141 -9.70893 -9.57648 -8.56405 -8.34089 -7.48897 -6.38285 -4.07423 1.81872 2.81473 3.43802 3.47734 3.58930 3.61518 4.36924 4.42985 4.44009 4.53598 4.67728 4.81739 5.01966 5.05888 5.13758 5.15900 5.26765 5.33047 5.37029 5.41713 5.49042 5.52676 5.55931 5.63607 5.66366 5.78699 5.85744 5.94578 6.00967 6.12658 6.41300 6.55054 6.85161 6.96444 7.34518 7.46788 8.18556 8.45362 8.86540 9.64886 11.02570 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.060746 B = 0.002935 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.827199 B = 9538.822944 C = 9696.223537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.072 4.072 6 H 0.082 0.918 7 C -0.083 4.083 8 S -0.277 6.277 9 C -0.075 4.075 10 C -0.087 4.087 11 C 0.014 3.986 12 C -0.601 4.601 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 1.075 2.925 17 H -0.289 1.289 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.152 4.152 21 C 0.057 3.943 22 O -0.379 6.379 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 18.582 -14.854 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.030 3.970 3 H 0.119 0.881 4 C -0.181 4.181 5 C -0.091 4.091 6 H 0.100 0.900 7 C -0.231 4.231 8 S -0.048 6.048 9 C -0.223 4.223 10 C -0.126 4.126 11 C -0.025 4.025 12 C -0.640 4.640 13 H 0.069 0.931 14 C -0.190 4.190 15 N -0.551 5.551 16 Si 0.903 3.097 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.190 4.190 21 C -0.019 4.019 22 O -0.298 6.298 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.237 16.857 -14.748 22.795 hybrid contribution 0.576 1.806 0.243 1.911 sum -3.661 18.662 -14.505 23.918 Atomic orbital electron populations 1.22477 0.96376 1.03026 1.02689 1.22143 0.93509 0.96269 0.85091 0.88094 1.22263 1.02023 0.95209 0.98620 1.20977 1.00926 0.93789 0.93399 0.89953 1.23405 1.02935 0.95463 1.01307 1.86768 1.65813 1.12198 1.40035 1.23612 1.01875 1.01424 0.95359 1.21317 1.00678 0.89735 1.00898 1.19236 0.95309 0.96350 0.91629 1.22094 1.30730 0.97372 1.13769 0.93093 1.25884 0.94699 1.05649 0.92732 1.70732 1.31055 1.16701 1.36621 0.83464 0.75988 0.74457 0.75764 1.21457 1.21304 1.21304 1.22302 1.02102 1.00490 0.94061 1.22610 0.98838 0.82014 0.98470 1.87978 1.73752 1.25002 1.43095 0.91631 0.91427 0.91874 0.90716 0.90837 0.90338 0.90353 0.90753 0.90713 0.92233 0.92247 0.97386 0.97375 0.92114 0.90968 0.89574 0.88861 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 8.65 37.16 0.32 -1.05 16 2 C 0.09 0.72 3.91 -26.69 -0.10 0.61 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.18 4.92 -26.60 -0.13 -1.31 16 5 C -0.07 -0.70 1.96 -90.44 -0.18 -0.88 16 6 H 0.08 0.84 6.62 -51.93 -0.34 0.49 16 7 C -0.08 -0.95 5.39 37.16 0.20 -0.75 16 8 S -0.28 -4.17 20.62 -107.50 -2.22 -6.39 16 9 C -0.07 -1.30 5.94 37.16 0.22 -1.08 16 10 C -0.09 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C 0.01 0.35 4.28 -27.88 -0.12 0.23 16 12 C -0.60 -17.42 9.11 -34.44 -0.31 -17.73 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 14 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 15 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 16 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.15 -1.51 5.19 -26.59 -0.14 -1.65 16 21 C 0.06 0.52 6.51 37.21 0.24 0.76 16 22 O -0.38 -3.89 10.60 -35.23 -0.37 -4.26 16 23 H 0.06 0.51 4.98 -51.93 -0.26 0.26 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 35 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 36 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.94 7.26 -51.93 -0.38 0.56 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.45 6.34 -51.93 -0.33 0.12 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -30.94 324.62 -9.39 -40.33 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.13 Total: -3.11 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -0.23 Total: -24.52 kcal Atomic # 7 Polarization: -28.29 SS G_CDS: 0.76 Total: -27.53 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.37 Total: -4.26 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.22 Total: -6.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.94 -9.39 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.081 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds