Wall clock time and date at job start Mon Mar 30 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48473 * 2 1 4 4 C 1.53083 * 109.47983 * 120.03847 * 2 1 3 5 5 C 1.53179 * 109.16530 * 62.37041 * 4 2 1 6 6 H 1.08999 * 109.61912 * 297.06640 * 5 4 2 7 7 C 1.52998 * 109.54362 * 176.84721 * 5 4 2 8 8 S 1.81406 * 109.47315 * 175.44353 * 7 5 4 9 9 C 1.81397 * 103.00214 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46812 * 179.97438 * 10 9 8 12 12 C 1.50706 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00138 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 119.99815 * 16 14 12 19 19 H 1.48498 * 109.47295 * 240.00422 * 16 14 12 20 20 C 1.53173 * 109.03535 * 56.98302 * 5 4 2 21 21 C 1.53093 * 109.16152 * 303.01678 * 20 5 4 22 22 O 1.42903 * 109.41286 * 57.61347 * 21 20 5 23 23 H 1.08998 * 109.47716 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47088 * 300.02549 * 1 2 3 25 25 H 1.09007 * 109.47544 * 60.01999 * 1 2 3 26 26 H 1.09006 * 109.52569 * 302.46695 * 4 2 1 27 27 H 1.09000 * 109.52660 * 182.27837 * 4 2 1 28 28 H 1.09003 * 109.47583 * 55.44629 * 7 5 4 29 29 H 1.08998 * 109.47660 * 295.44791 * 7 5 4 30 30 H 1.09000 * 109.46828 * 60.00043 * 9 8 7 31 31 H 1.08994 * 109.47200 * 300.00169 * 9 8 7 32 32 H 1.09000 * 109.47115 * 60.00497 * 10 9 8 33 33 H 1.08994 * 109.47558 * 300.00229 * 10 9 8 34 34 H 1.08996 * 109.46961 * 60.00901 * 11 10 9 35 35 H 1.08994 * 109.47402 * 300.00515 * 11 10 9 36 36 H 0.97000 * 119.99651 * 0.02562 * 15 14 12 37 37 H 1.08996 * 109.52300 * 62.92533 * 20 5 4 38 38 H 1.09007 * 109.51963 * 183.05446 * 20 5 4 39 39 H 1.08995 * 109.48104 * 177.59195 * 21 20 5 40 40 H 1.08997 * 109.48335 * 297.61834 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7224 1.2494 5 6 1.5756 -2.1815 1.2118 6 1 0.4867 -2.2195 1.2413 7 6 2.1466 -2.9318 2.4167 8 16 1.4875 -4.6216 2.4447 9 6 2.2666 -5.3392 3.9173 10 6 1.8041 -6.7881 4.0841 11 6 2.4618 -7.3935 5.3259 12 6 2.0067 -8.8209 5.4898 13 1 1.3178 -9.2531 4.7792 14 6 2.4700 -9.5749 6.5470 15 7 3.3085 -9.0485 7.4127 16 14 1.9055 -11.3439 6.7507 17 1 0.9689 -11.6941 5.6528 18 1 3.0828 -12.2478 6.7035 19 1 1.2164 -11.4963 8.0573 20 6 2.0763 -2.8322 -0.0813 21 6 1.5644 -2.0283 -1.2793 22 8 2.0065 -0.6741 -1.1665 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5143 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 1.6420 -0.2361 2.1398 27 1 3.1297 -0.6877 1.2708 28 1 1.8627 -2.4159 3.3340 29 1 3.2334 -2.9669 2.3413 30 1 1.9800 -4.7632 4.7972 31 1 3.3503 -5.3141 3.8038 32 1 2.0904 -7.3644 3.2043 33 1 0.7204 -6.8128 4.1978 34 1 2.1758 -6.8174 6.2059 35 1 3.5454 -7.3688 5.2118 36 1 3.6008 -8.1296 7.3075 37 1 3.1662 -2.8400 -0.0868 38 1 1.7043 -3.8551 -0.1420 39 1 1.9528 -2.4619 -2.2008 40 1 0.4748 -2.0549 -1.2962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362457300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:39 Heat of formation + Delta-G solvation = -107.899703 kcal Electronic energy + Delta-G solvation = -16892.144040 eV Core-core repulsion = 14216.710349 eV Total energy + Delta-G solvation = -2675.433691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80040 -36.72297 -35.90937 -34.11909 -33.17767 -30.21317 -29.07819 -27.88432 -25.33829 -24.44417 -23.32430 -22.26674 -20.23644 -19.02320 -17.41884 -17.30821 -16.85918 -16.46526 -16.00736 -15.74269 -15.57774 -15.33492 -15.22154 -14.55483 -14.25697 -13.83622 -13.76832 -13.42946 -13.28861 -13.03036 -12.73088 -12.66280 -12.61687 -12.18858 -12.02038 -11.96046 -11.86948 -11.80194 -11.50253 -11.04130 -10.83421 -10.69914 -10.57953 -10.43537 -8.72984 -8.70085 -6.43596 0.62449 1.51391 1.60877 1.60911 1.78027 2.54366 2.93519 3.12326 3.56506 3.65855 3.76387 3.89575 3.95594 4.00984 4.16687 4.25280 4.36078 4.42347 4.43392 4.45706 4.55954 4.62652 4.64575 4.76137 4.77765 4.80722 4.89614 4.95132 5.01677 5.11609 5.17733 5.24334 5.31617 5.40787 5.41023 5.94931 6.14655 6.29430 6.53827 7.38065 8.68372 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.060746 B = 0.002935 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.827199 B = 9538.822944 C = 9696.223537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.115 0.885 4 C -0.136 4.136 5 C -0.068 4.068 6 H 0.082 0.918 7 C -0.072 4.072 8 S -0.287 6.287 9 C -0.071 4.071 10 C -0.074 4.074 11 C 0.014 3.986 12 C -0.621 4.621 13 H 0.049 0.951 14 C -0.039 4.039 15 N -0.938 5.938 16 Si 1.123 2.877 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.149 4.149 21 C 0.058 3.942 22 O -0.396 6.396 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.054 0.946 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 19.353 -15.587 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.026 3.974 3 H 0.133 0.867 4 C -0.176 4.176 5 C -0.087 4.087 6 H 0.100 0.900 7 C -0.220 4.220 8 S -0.059 6.059 9 C -0.219 4.219 10 C -0.113 4.113 11 C -0.025 4.025 12 C -0.659 4.659 13 H 0.068 0.932 14 C -0.236 4.236 15 N -0.575 5.575 16 Si 0.944 3.056 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.187 4.187 21 C -0.018 4.018 22 O -0.316 6.316 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.928 17.645 -15.490 23.991 hybrid contribution 0.795 1.669 0.418 1.895 sum -4.133 19.314 -15.071 24.844 Atomic orbital electron populations 1.22452 0.95667 1.02743 1.03418 1.22316 0.94128 0.96694 0.84296 0.86746 1.22237 1.01951 0.93926 0.99449 1.20970 1.00789 0.94605 0.92369 0.90021 1.23515 1.03083 0.92706 1.02702 1.86780 1.65830 1.15206 1.38084 1.23334 1.02166 0.99240 0.97184 1.21038 0.99845 0.92111 0.98292 1.19160 0.94600 0.95405 0.93307 1.22530 1.30614 0.98985 1.13789 0.93231 1.27481 0.94012 1.09802 0.92313 1.70867 1.32598 1.16290 1.37737 0.82862 0.76359 0.69635 0.76737 1.19529 1.20227 1.20192 1.22257 1.01678 1.00036 0.94769 1.22633 0.99205 0.81644 0.98345 1.87960 1.74201 1.25344 1.44057 0.92370 0.90206 0.91691 0.89221 0.91024 0.89262 0.89938 0.90333 0.90450 0.92744 0.92686 0.98830 0.98887 0.93422 0.91548 0.90750 0.88116 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 8.65 71.98 0.62 -1.66 16 2 C 0.08 1.17 3.91 30.62 0.12 1.29 16 3 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.14 -1.93 4.92 30.68 0.15 -1.78 16 5 C -0.07 -1.20 1.96 -10.68 -0.02 -1.22 16 6 H 0.08 1.50 6.62 -2.39 -0.02 1.48 16 7 C -0.07 -1.52 5.39 71.98 0.39 -1.13 16 8 S -0.29 -8.36 20.62 -56.49 -1.16 -9.53 16 9 C -0.07 -2.44 5.94 71.98 0.43 -2.02 16 10 C -0.07 -3.17 5.16 30.60 0.16 -3.01 16 11 C 0.01 0.74 4.28 29.85 0.13 0.87 16 12 C -0.62 -36.36 9.11 25.60 0.23 -36.13 16 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 14 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 15 N -0.94 -58.73 13.65 21.45 0.29 -58.44 16 16 Si 1.12 51.02 29.90 68.60 2.05 53.07 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.15 -2.80 5.19 30.68 0.16 -2.64 16 21 C 0.06 0.98 6.51 72.01 0.47 1.44 16 22 O -0.40 -7.45 10.60 -148.98 -1.58 -9.03 16 23 H 0.06 0.80 4.98 -2.39 -0.01 0.79 16 24 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 34 H -0.01 -0.36 8.01 -2.39 -0.02 -0.38 16 35 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 36 H 0.26 16.18 7.22 -92.71 -0.67 15.51 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.56 7.26 -2.38 -0.02 1.55 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 0.92 6.34 -2.39 -0.02 0.90 16 Total: -1.00 -65.93 324.62 3.98 -61.95 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.08 Total: 9.78 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.30 Total: -47.81 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.29 Total: -58.44 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.58 Total: -9.03 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -65.93 3.98 -61.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.949 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds