Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48199 * 2 1 4 4 C 1.53100 * 109.48041 * 120.01663 * 2 1 3 5 5 C 1.53178 * 109.16113 * 177.59448 * 4 2 1 6 6 H 1.08997 * 109.54830 * 62.97648 * 5 4 2 7 7 C 1.52999 * 109.54151 * 183.15152 * 5 4 2 8 8 S 1.81400 * 109.47227 * 185.00129 * 7 5 4 9 9 C 1.81399 * 103.00172 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.53174 * 109.03671 * 303.01778 * 5 4 2 21 21 C 1.53095 * 109.16635 * 56.98315 * 20 5 4 22 22 O 1.42900 * 109.41029 * 302.39518 * 21 20 5 23 23 H 1.09003 * 109.47480 * 299.98211 * 1 2 3 24 24 H 1.08994 * 109.47387 * 59.98481 * 1 2 3 25 25 H 1.09007 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.52503 * 57.68827 * 4 2 1 27 27 H 1.09005 * 109.57110 * 297.52724 * 4 2 1 28 28 H 1.09002 * 109.47273 * 65.00074 * 7 5 4 29 29 H 1.09006 * 109.47207 * 305.00018 * 7 5 4 30 30 H 1.09001 * 109.47190 * 59.99989 * 9 8 7 31 31 H 1.09004 * 109.47089 * 299.99856 * 9 8 7 32 32 H 1.09001 * 109.46832 * 60.00079 * 10 9 8 33 33 H 1.09001 * 109.47502 * 299.99601 * 10 9 8 34 34 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 35 35 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 37 37 H 1.09006 * 109.52017 * 176.88850 * 20 5 4 38 38 H 1.08997 * 109.52219 * 297.07327 * 20 5 4 39 39 H 1.08989 * 109.48040 * 182.40908 * 21 20 5 40 40 H 1.09001 * 109.48324 * 62.37622 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 1.2498 5 6 3.5711 -0.7706 1.2124 6 1 3.9690 0.2437 1.2424 7 6 4.0877 -1.5589 2.4176 8 16 5.9001 -1.4903 2.4532 9 6 6.3165 -2.4651 3.9253 10 6 7.8362 -2.5047 4.0975 11 6 8.1875 -3.3264 5.3396 12 6 9.6844 -3.3659 5.5089 13 1 10.3215 -2.8557 4.8016 14 6 10.2405 -4.0526 6.5673 15 7 9.4647 -4.6735 7.4288 16 14 12.0960 -4.1011 6.7776 17 1 12.4369 -4.8987 7.9830 18 1 12.6125 -2.7179 6.9363 19 1 12.7138 -4.7257 5.5803 20 6 4.0176 -1.4600 -0.0805 21 6 3.4308 -0.7096 -1.2789 22 8 2.0067 -0.6744 -1.1662 23 1 -0.3634 0.5136 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6444 -1.7372 1.2714 27 1 1.7148 -0.1848 2.1405 28 1 3.7649 -2.5969 2.3383 29 1 3.6896 -1.1236 3.3342 30 1 5.9379 -3.4804 3.8078 31 1 5.8626 -2.0075 4.8044 32 1 8.2152 -1.4894 4.2149 33 1 8.2898 -2.9625 3.2184 34 1 7.8085 -4.3417 5.2226 35 1 7.7340 -2.8682 6.2184 36 1 8.5012 -4.6480 7.3198 37 1 5.1059 -1.4497 -0.1416 38 1 3.6614 -2.4901 -0.0857 39 1 3.7100 -1.2207 -2.2001 40 1 3.8193 0.3087 -1.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362457301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = -94.743558 kcal Electronic energy + Delta-G solvation = -16734.626205 eV Core-core repulsion = 14059.763008 eV Total energy + Delta-G solvation = -2674.863198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81432 -35.14548 -34.73159 -33.06624 -32.09935 -29.14099 -27.32029 -26.93670 -23.76166 -23.12746 -21.90208 -20.66901 -20.25100 -16.86388 -16.62406 -16.14641 -16.04818 -15.25650 -14.93786 -14.58104 -14.55178 -13.75235 -13.44991 -13.35986 -12.95129 -12.84819 -12.63681 -12.42642 -12.07277 -11.88088 -11.66391 -11.41882 -11.25212 -11.03998 -10.84564 -10.76857 -10.52062 -10.13963 -9.94811 -9.90196 -9.69856 -9.57198 -8.56724 -8.34558 -7.49155 -6.38187 -4.07345 1.81457 2.81169 3.43988 3.45961 3.49669 3.64654 4.31168 4.39555 4.53970 4.54826 4.65345 4.87650 4.97161 5.07244 5.16758 5.24545 5.25835 5.35664 5.36974 5.41678 5.48405 5.49079 5.53280 5.60524 5.69389 5.73617 5.85836 5.92884 6.00782 6.09323 6.41243 6.54925 6.85071 6.97882 7.34292 7.46796 8.18350 8.44355 8.86182 9.64845 11.02535 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.063551 B = 0.002855 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.487389 B = 9805.615915 C =10088.199183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.071 4.071 6 H 0.079 0.921 7 C -0.082 4.082 8 S -0.276 6.276 9 C -0.075 4.075 10 C -0.087 4.087 11 C 0.014 3.986 12 C -0.602 4.602 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.913 5.913 16 Si 1.070 2.930 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.152 4.152 21 C 0.062 3.938 22 O -0.382 6.382 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.008 9.190 -14.850 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.091 4.091 6 H 0.098 0.902 7 C -0.230 4.230 8 S -0.048 6.048 9 C -0.223 4.223 10 C -0.126 4.126 11 C -0.025 4.025 12 C -0.640 4.640 13 H 0.068 0.932 14 C -0.189 4.189 15 N -0.549 5.549 16 Si 0.898 3.102 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.190 4.190 21 C -0.014 4.014 22 O -0.302 6.302 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.242 9.029 -14.725 23.037 hybrid contribution -1.849 0.048 0.176 1.857 sum -17.091 9.077 -14.550 24.211 Atomic orbital electron populations 1.21768 0.93088 1.02973 1.02392 1.22066 0.94979 0.94978 0.85060 0.92466 1.22306 0.94956 1.02252 0.98603 1.20956 0.94903 0.99749 0.93471 0.90217 1.23395 0.95006 1.03401 1.01247 1.86774 1.05734 1.72135 1.40161 1.23616 1.02955 1.00348 0.95357 1.21317 0.88943 1.01483 1.00875 1.19228 0.97469 0.94162 0.91623 1.22035 0.91497 1.36617 1.13874 0.93190 1.25884 1.07105 0.93226 0.92727 1.70791 1.06305 1.41176 1.36675 0.83535 0.74056 0.76396 0.76246 1.20743 1.21383 1.21382 1.22313 1.02340 1.00314 0.94033 1.22583 0.80659 0.99648 0.98527 1.87915 1.21305 1.77996 1.42965 0.91085 0.91860 0.91784 0.90796 0.90732 0.90328 0.90309 0.90709 0.90736 0.92252 0.92227 0.97378 0.97385 0.92178 0.89514 0.90915 0.88739 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.56 37.16 0.36 -0.65 16 2 C 0.09 0.74 3.26 -26.68 -0.09 0.66 16 3 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.14 -1.21 4.71 -26.59 -0.13 -1.33 16 5 C -0.07 -0.71 2.27 -90.44 -0.21 -0.92 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.08 -0.95 5.39 37.16 0.20 -0.75 16 8 S -0.28 -4.19 20.64 -107.50 -2.22 -6.41 16 9 C -0.07 -1.30 5.94 37.16 0.22 -1.08 16 10 C -0.09 -1.85 5.16 -26.73 -0.14 -1.99 16 11 C 0.01 0.36 4.28 -27.88 -0.12 0.24 16 12 C -0.60 -17.45 9.11 -34.44 -0.31 -17.76 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 14 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 15 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 16 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.15 -1.52 5.20 -26.59 -0.14 -1.66 16 21 C 0.06 0.57 6.84 37.21 0.25 0.83 16 22 O -0.38 -3.99 10.41 -35.23 -0.37 -4.36 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 35 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 36 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 37 H 0.09 0.95 7.28 -51.93 -0.38 0.57 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.75 8.14 -51.94 -0.42 0.33 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -31.03 331.64 -9.58 -40.61 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -7.47 Total: -3.70 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -0.19 Total: -24.10 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.76 Total: -27.51 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.37 Total: -4.36 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.22 Total: -6.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.03 -9.58 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.133 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds