Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48199 * 2 1 4 4 C 1.53100 * 109.48041 * 120.01663 * 2 1 3 5 5 C 1.53178 * 109.16113 * 177.59448 * 4 2 1 6 6 H 1.08997 * 109.54830 * 62.97648 * 5 4 2 7 7 C 1.52999 * 109.54151 * 183.15152 * 5 4 2 8 8 S 1.81400 * 109.47227 * 185.00129 * 7 5 4 9 9 C 1.81399 * 103.00172 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47147 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.53174 * 109.03671 * 303.01778 * 5 4 2 21 21 C 1.53095 * 109.16635 * 56.98315 * 20 5 4 22 22 O 1.42900 * 109.41029 * 302.39518 * 21 20 5 23 23 H 1.09003 * 109.47480 * 299.98211 * 1 2 3 24 24 H 1.08994 * 109.47387 * 59.98481 * 1 2 3 25 25 H 1.09007 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.52503 * 57.68827 * 4 2 1 27 27 H 1.09005 * 109.57110 * 297.52724 * 4 2 1 28 28 H 1.09002 * 109.47273 * 65.00074 * 7 5 4 29 29 H 1.09006 * 109.47207 * 305.00018 * 7 5 4 30 30 H 1.09001 * 109.47190 * 59.99989 * 9 8 7 31 31 H 1.09004 * 109.47089 * 299.99856 * 9 8 7 32 32 H 1.09001 * 109.46832 * 60.00079 * 10 9 8 33 33 H 1.09001 * 109.47502 * 299.99601 * 10 9 8 34 34 H 1.09001 * 109.47002 * 60.00426 * 11 10 9 35 35 H 1.08993 * 109.46955 * 299.99989 * 11 10 9 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 37 37 H 1.09006 * 109.52017 * 176.88850 * 20 5 4 38 38 H 1.08997 * 109.52219 * 297.07327 * 20 5 4 39 39 H 1.08989 * 109.48040 * 182.40908 * 21 20 5 40 40 H 1.09001 * 109.48324 * 62.37622 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7220 1.2498 5 6 3.5711 -0.7706 1.2124 6 1 3.9690 0.2437 1.2424 7 6 4.0877 -1.5589 2.4176 8 16 5.9001 -1.4903 2.4532 9 6 6.3165 -2.4651 3.9253 10 6 7.8362 -2.5047 4.0975 11 6 8.1875 -3.3264 5.3396 12 6 9.6844 -3.3659 5.5089 13 1 10.3215 -2.8557 4.8016 14 6 10.2405 -4.0526 6.5673 15 7 9.4647 -4.6735 7.4288 16 14 12.0960 -4.1011 6.7776 17 1 12.4369 -4.8987 7.9830 18 1 12.6125 -2.7179 6.9363 19 1 12.7138 -4.7257 5.5803 20 6 4.0176 -1.4600 -0.0805 21 6 3.4308 -0.7096 -1.2789 22 8 2.0067 -0.6744 -1.1662 23 1 -0.3634 0.5136 0.8901 24 1 -0.3634 0.5140 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6444 -1.7372 1.2714 27 1 1.7148 -0.1848 2.1405 28 1 3.7649 -2.5969 2.3383 29 1 3.6896 -1.1236 3.3342 30 1 5.9379 -3.4804 3.8078 31 1 5.8626 -2.0075 4.8044 32 1 8.2152 -1.4894 4.2149 33 1 8.2898 -2.9625 3.2184 34 1 7.8085 -4.3417 5.2226 35 1 7.7340 -2.8682 6.2184 36 1 8.5012 -4.6480 7.3198 37 1 5.1059 -1.4497 -0.1416 38 1 3.6614 -2.4901 -0.0857 39 1 3.7100 -1.2207 -2.2001 40 1 3.8193 0.3087 -1.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362457301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -111.071823 kcal Electronic energy + Delta-G solvation = -16735.334252 eV Core-core repulsion = 14059.763008 eV Total energy + Delta-G solvation = -2675.571244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.53930 -36.72338 -35.93690 -34.12108 -33.70614 -29.98100 -29.05169 -27.81039 -25.34518 -24.36766 -22.84068 -22.18038 -21.12098 -19.02245 -17.38022 -17.13708 -16.89634 -16.45461 -16.02239 -15.71261 -15.59301 -15.44010 -15.28716 -14.45583 -14.12566 -13.79869 -13.50090 -13.46972 -13.32724 -13.11118 -12.84252 -12.64613 -12.59817 -12.11243 -12.09201 -11.97935 -11.84732 -11.79150 -11.50548 -11.22126 -10.89752 -10.70823 -10.57599 -10.44539 -8.72818 -8.70696 -6.43547 0.61711 1.51759 1.60151 1.60174 1.79893 2.55116 2.84138 3.12332 3.52345 3.62119 3.81214 3.89435 3.95602 3.97221 4.20268 4.25746 4.27178 4.41549 4.44408 4.54686 4.58184 4.62600 4.68730 4.76657 4.77485 4.81830 4.86831 4.89537 5.03401 5.06838 5.15167 5.29689 5.31427 5.33818 5.40790 5.94880 6.14149 6.29801 6.53498 7.38169 8.68449 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.063551 B = 0.002855 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.487389 B = 9805.615915 C =10088.199183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.135 4.135 5 C -0.068 4.068 6 H 0.078 0.922 7 C -0.071 4.071 8 S -0.287 6.287 9 C -0.071 4.071 10 C -0.074 4.074 11 C 0.014 3.986 12 C -0.623 4.623 13 H 0.050 0.950 14 C -0.039 4.039 15 N -0.937 5.937 16 Si 1.118 2.882 17 H -0.282 1.282 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.150 4.150 21 C 0.063 3.937 22 O -0.399 6.399 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.054 0.946 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.464 10.117 -15.630 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.081 0.919 4 C -0.175 4.175 5 C -0.088 4.088 6 H 0.097 0.903 7 C -0.219 4.219 8 S -0.059 6.059 9 C -0.219 4.219 10 C -0.113 4.113 11 C -0.025 4.025 12 C -0.660 4.660 13 H 0.068 0.932 14 C -0.236 4.236 15 N -0.574 5.574 16 Si 0.939 3.061 17 H -0.207 1.207 18 H -0.193 1.193 19 H -0.194 1.194 20 C -0.188 4.188 21 C -0.014 4.014 22 O -0.319 6.319 23 H 0.106 0.894 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.715 9.966 -15.520 24.231 hybrid contribution -1.798 -0.209 0.365 1.846 sum -17.512 9.757 -15.154 25.130 Atomic orbital electron populations 1.21781 0.91909 1.02993 1.03318 1.22238 0.95963 0.95037 0.84389 0.91922 1.22270 0.93423 1.02426 0.99365 1.20953 0.96025 0.99254 0.92542 0.90325 1.23497 0.91612 1.04202 1.02603 1.86784 1.09544 1.71334 1.38234 1.23340 1.00113 1.01319 0.97163 1.21036 0.91916 1.00030 0.98270 1.19154 0.96001 0.93995 0.93304 1.22490 0.93212 1.36411 1.13925 0.93158 1.27489 1.11458 0.92343 0.92320 1.70923 1.05860 1.42802 1.37828 0.82930 0.68759 0.77573 0.76869 1.20696 1.19321 1.19359 1.22266 1.01608 1.00210 0.94674 1.22625 0.80283 1.00000 0.98476 1.87904 1.21768 1.78359 1.43891 0.89366 0.91777 0.92200 0.91048 0.89216 0.89889 0.89219 0.90433 0.90313 0.92689 0.92717 0.98903 0.98849 0.93487 0.90610 0.91471 0.87857 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.56 71.98 0.69 -0.99 16 2 C 0.08 1.22 3.26 30.63 0.10 1.32 16 3 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 4 C -0.14 -1.99 4.71 30.69 0.14 -1.84 16 5 C -0.07 -1.23 2.27 -10.68 -0.02 -1.25 16 6 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.07 -1.51 5.39 71.98 0.39 -1.12 16 8 S -0.29 -8.38 20.64 -56.49 -1.17 -9.54 16 9 C -0.07 -2.45 5.94 71.98 0.43 -2.02 16 10 C -0.07 -3.15 5.16 30.60 0.16 -2.99 16 11 C 0.01 0.75 4.28 29.85 0.13 0.88 16 12 C -0.62 -36.41 9.11 25.60 0.23 -36.18 16 13 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 14 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 15 N -0.94 -58.80 13.65 21.45 0.29 -58.51 16 16 Si 1.12 50.77 29.90 68.60 2.05 52.83 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 C -0.15 -2.81 5.20 30.68 0.16 -2.65 16 21 C 0.06 1.06 6.84 72.01 0.49 1.55 16 22 O -0.40 -7.71 10.41 -148.98 -1.55 -9.26 16 23 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 34 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 35 H -0.01 -0.38 8.01 -2.39 -0.02 -0.39 16 36 H 0.26 16.16 7.22 -92.71 -0.67 15.49 16 37 H 0.08 1.59 7.28 -2.38 -0.02 1.57 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.18 331.64 4.05 -62.13 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.06 Total: 9.48 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 3.36 Total: -47.13 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.29 Total: -58.51 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -1.55 Total: -9.26 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.83 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.17 Total: -9.54 kcal Total: -66.18 4.05 -62.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.942 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds