Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47745 * 2 1 4 4 C 1.53093 * 109.49393 * 239.97484 * 2 1 3 5 5 C 1.53173 * 109.16272 * 182.40092 * 4 2 1 6 6 H 1.08997 * 109.61645 * 297.06359 * 5 4 2 7 7 C 1.53006 * 109.54110 * 176.84711 * 5 4 2 8 8 S 1.81398 * 109.47199 * 175.44286 * 7 5 4 9 9 C 1.81399 * 103.00088 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46810 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46921 * 60.00420 * 16 14 12 18 18 H 1.48506 * 109.46938 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47056 * 300.00305 * 16 14 12 20 20 C 1.53176 * 109.03954 * 56.97846 * 5 4 2 21 21 C 1.53087 * 109.16160 * 303.02171 * 20 5 4 22 22 O 1.42894 * 109.42080 * 57.60855 * 21 20 5 23 23 H 1.08997 * 109.47065 * 299.96968 * 1 2 3 24 24 H 1.08990 * 109.47126 * 59.97936 * 1 2 3 25 25 H 1.09006 * 109.46545 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52140 * 62.49103 * 4 2 1 27 27 H 1.09002 * 109.51861 * 302.30581 * 4 2 1 28 28 H 1.09002 * 109.47348 * 55.44395 * 7 5 4 29 29 H 1.09000 * 109.46988 * 295.44036 * 7 5 4 30 30 H 1.09000 * 109.47070 * 300.00061 * 9 8 7 31 31 H 1.09001 * 109.46593 * 60.00058 * 9 8 7 32 32 H 1.09000 * 109.47486 * 299.99969 * 10 9 8 33 33 H 1.09001 * 109.47362 * 60.00691 * 10 9 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.52049 * 62.92586 * 20 5 4 38 38 H 1.09000 * 109.52311 * 183.04474 * 20 5 4 39 39 H 1.09005 * 109.47918 * 177.59041 * 21 20 5 40 40 H 1.09002 * 109.48105 * 297.62142 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0409 -0.7221 -1.2495 5 6 3.5714 -0.7704 -1.2119 6 1 3.9703 0.2435 -1.2413 7 6 4.0884 -1.5589 -2.4169 8 16 5.9012 -1.5010 -2.4449 9 6 6.3179 -2.4747 -3.9176 10 6 7.8381 -2.5218 -4.0844 11 6 8.1896 -3.3426 -5.3269 12 6 9.6869 -3.3896 -5.4909 13 1 10.3241 -2.8849 -4.7797 14 6 10.2433 -4.0777 -6.5481 15 7 9.4674 -4.6926 -7.4139 16 14 12.0993 -4.1354 -6.7518 17 1 12.7094 -4.7649 -5.5532 18 1 12.4404 -4.9321 -7.9577 19 1 12.6234 -2.7547 -6.9067 20 6 4.0180 -1.4595 0.0812 21 6 3.4307 -0.7088 1.2792 22 8 2.0067 -0.6741 1.1665 23 1 -0.3633 0.5133 0.8902 24 1 -0.3633 0.5141 -0.8897 25 1 -0.3633 -1.0278 -0.0005 26 1 1.7152 -0.1843 -2.1398 27 1 1.6449 -1.7374 -1.2709 28 1 3.6967 -1.1191 -3.3341 29 1 3.7591 -2.5952 -2.3414 30 1 5.9328 -3.4880 -3.8041 31 1 5.8704 -2.0123 -4.7974 32 1 8.2228 -1.5083 -4.1980 33 1 8.2860 -2.9840 -3.2046 34 1 7.8048 -4.3561 -5.2137 35 1 7.7418 -2.8801 -6.2065 36 1 9.8588 -5.1764 -8.1578 37 1 3.6619 -2.4896 0.0867 38 1 5.1063 -1.4500 0.1419 39 1 3.7100 -1.2198 2.2007 40 1 3.8190 0.3095 1.2960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362457303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -90.882400 kcal Electronic energy + Delta-G solvation = -16704.667912 eV Core-core repulsion = 14029.972146 eV Total energy + Delta-G solvation = -2674.695765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78058 -35.10187 -34.44905 -33.03578 -32.02540 -29.10255 -27.52911 -27.03249 -23.81069 -23.23391 -21.84579 -20.47320 -20.07331 -16.61077 -16.46600 -16.10813 -15.90201 -15.20697 -14.88237 -14.64124 -14.46410 -14.37325 -13.39558 -13.03696 -12.82263 -12.66476 -12.51851 -12.41219 -12.10776 -11.73729 -11.56888 -11.38190 -11.27318 -10.96077 -10.85977 -10.79434 -10.55396 -10.44639 -9.79493 -9.76167 -9.64578 -9.29666 -9.11332 -8.37266 -7.42040 -6.02429 -4.05100 1.89142 2.89341 3.33053 3.36988 3.40041 3.52664 4.35206 4.43679 4.44732 4.58554 4.68801 4.90722 5.00798 5.11364 5.20862 5.28025 5.29177 5.33357 5.38784 5.50572 5.52452 5.54209 5.63181 5.65705 5.72802 5.77153 5.88865 5.97116 6.12839 6.13377 6.55015 6.71334 7.00812 7.01302 7.62267 7.74737 7.96422 8.38321 9.01182 9.59097 11.08939 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.063691 B = 0.002846 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.514703 B = 9836.472613 C =10119.076513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.071 4.071 6 H 0.079 0.921 7 C -0.082 4.082 8 S -0.281 6.281 9 C -0.072 4.072 10 C -0.094 4.094 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.152 4.152 21 C 0.062 3.938 22 O -0.383 6.383 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 8.909 14.309 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.091 4.091 6 H 0.098 0.902 7 C -0.230 4.230 8 S -0.052 6.052 9 C -0.220 4.220 10 C -0.133 4.133 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.190 4.190 21 C -0.014 4.014 22 O -0.302 6.302 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.464 9.224 14.989 24.100 hybrid contribution 0.427 -0.664 -1.402 1.609 sum -16.037 8.560 13.588 22.696 Atomic orbital electron populations 1.21767 0.93118 1.02964 1.02369 1.22070 0.94956 0.94982 0.85089 0.92486 1.22303 0.95011 1.02232 0.98564 1.20956 0.94846 0.99753 0.93518 0.90248 1.23384 0.95100 1.03364 1.01174 1.86761 1.05597 1.72470 1.40391 1.23615 1.03046 1.00285 0.95076 1.21462 0.88922 1.01560 1.01394 1.19098 0.96495 0.94596 0.90946 1.21187 0.91905 1.32508 1.10357 0.92594 1.25026 0.98170 0.95409 0.95839 1.69953 1.34975 1.34122 1.14528 0.86624 0.85576 0.78132 0.77493 1.20172 1.21266 1.20184 1.22310 1.02360 1.00307 0.94020 1.22583 0.80653 0.99638 0.98548 1.87915 1.21316 1.78023 1.42951 0.91887 0.91093 0.91788 0.90738 0.90790 0.90319 0.90341 0.90646 0.90680 0.92430 0.92413 0.96468 0.96471 0.92897 0.90926 0.89480 0.88770 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.57 37.16 0.36 -0.66 16 2 C 0.09 0.75 3.26 -26.68 -0.09 0.66 16 3 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.14 -1.22 4.71 -26.59 -0.13 -1.34 16 5 C -0.07 -0.72 2.28 -90.44 -0.21 -0.92 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.08 -0.95 5.39 37.16 0.20 -0.75 16 8 S -0.28 -4.26 20.61 -107.50 -2.22 -6.47 16 9 C -0.07 -1.26 5.94 37.16 0.22 -1.04 16 10 C -0.09 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.15 -1.53 5.19 -26.60 -0.14 -1.67 16 21 C 0.06 0.57 6.84 37.20 0.25 0.83 16 22 O -0.38 -4.02 10.41 -35.23 -0.37 -4.39 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 29 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.96 7.26 -51.93 -0.38 0.58 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -30.12 332.91 -9.59 -39.71 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.53 Total: -4.25 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -0.21 Total: -20.09 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.37 Total: -4.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.22 Total: -6.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.12 -9.59 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.171 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds