Wall clock time and date at job start Mon Mar 30 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47745 * 2 1 4 4 C 1.53093 * 109.49393 * 239.97484 * 2 1 3 5 5 C 1.53173 * 109.16272 * 182.40092 * 4 2 1 6 6 H 1.08997 * 109.61645 * 297.06359 * 5 4 2 7 7 C 1.53006 * 109.54110 * 176.84711 * 5 4 2 8 8 S 1.81398 * 109.47199 * 175.44286 * 7 5 4 9 9 C 1.81399 * 103.00088 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46810 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46921 * 60.00420 * 16 14 12 18 18 H 1.48506 * 109.46938 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47056 * 300.00305 * 16 14 12 20 20 C 1.53176 * 109.03954 * 56.97846 * 5 4 2 21 21 C 1.53087 * 109.16160 * 303.02171 * 20 5 4 22 22 O 1.42894 * 109.42080 * 57.60855 * 21 20 5 23 23 H 1.08997 * 109.47065 * 299.96968 * 1 2 3 24 24 H 1.08990 * 109.47126 * 59.97936 * 1 2 3 25 25 H 1.09006 * 109.46545 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.52140 * 62.49103 * 4 2 1 27 27 H 1.09002 * 109.51861 * 302.30581 * 4 2 1 28 28 H 1.09002 * 109.47348 * 55.44395 * 7 5 4 29 29 H 1.09000 * 109.46988 * 295.44036 * 7 5 4 30 30 H 1.09000 * 109.47070 * 300.00061 * 9 8 7 31 31 H 1.09001 * 109.46593 * 60.00058 * 9 8 7 32 32 H 1.09000 * 109.47486 * 299.99969 * 10 9 8 33 33 H 1.09001 * 109.47362 * 60.00691 * 10 9 8 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.52049 * 62.92586 * 20 5 4 38 38 H 1.09000 * 109.52311 * 183.04474 * 20 5 4 39 39 H 1.09005 * 109.47918 * 177.59041 * 21 20 5 40 40 H 1.09002 * 109.48105 * 297.62142 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0409 -0.7221 -1.2495 5 6 3.5714 -0.7704 -1.2119 6 1 3.9703 0.2435 -1.2413 7 6 4.0884 -1.5589 -2.4169 8 16 5.9012 -1.5010 -2.4449 9 6 6.3179 -2.4747 -3.9176 10 6 7.8381 -2.5218 -4.0844 11 6 8.1896 -3.3426 -5.3269 12 6 9.6869 -3.3896 -5.4909 13 1 10.3241 -2.8849 -4.7797 14 6 10.2433 -4.0777 -6.5481 15 7 9.4674 -4.6926 -7.4139 16 14 12.0993 -4.1354 -6.7518 17 1 12.7094 -4.7649 -5.5532 18 1 12.4404 -4.9321 -7.9577 19 1 12.6234 -2.7547 -6.9067 20 6 4.0180 -1.4595 0.0812 21 6 3.4307 -0.7088 1.2792 22 8 2.0067 -0.6741 1.1665 23 1 -0.3633 0.5133 0.8902 24 1 -0.3633 0.5141 -0.8897 25 1 -0.3633 -1.0278 -0.0005 26 1 1.7152 -0.1843 -2.1398 27 1 1.6449 -1.7374 -1.2709 28 1 3.6967 -1.1191 -3.3341 29 1 3.7591 -2.5952 -2.3414 30 1 5.9328 -3.4880 -3.8041 31 1 5.8704 -2.0123 -4.7974 32 1 8.2228 -1.5083 -4.1980 33 1 8.2860 -2.9840 -3.2046 34 1 7.8048 -4.3561 -5.2137 35 1 7.7418 -2.8801 -6.2065 36 1 9.8588 -5.1764 -8.1578 37 1 3.6619 -2.4896 0.0867 38 1 5.1063 -1.4500 0.1419 39 1 3.7100 -1.2198 2.2007 40 1 3.8190 0.3095 1.2960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362457303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:51 Heat of formation + Delta-G solvation = -106.387409 kcal Electronic energy + Delta-G solvation = -16705.340259 eV Core-core repulsion = 14029.972146 eV Total energy + Delta-G solvation = -2675.368113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51165 -36.38499 -35.89903 -34.06179 -33.68212 -29.96938 -29.36850 -27.79327 -25.44121 -24.32093 -22.69373 -21.95840 -21.08212 -18.57122 -17.33549 -17.07204 -16.86744 -16.57943 -16.32730 -15.93392 -15.55646 -15.37347 -14.54598 -14.33972 -14.20133 -13.78541 -13.46920 -13.41179 -13.18134 -13.04704 -12.78384 -12.73461 -12.72177 -12.37415 -12.06580 -12.02946 -11.72766 -11.65531 -11.37975 -11.25800 -11.06304 -10.81684 -10.57551 -10.42126 -8.63946 -8.22647 -6.34067 0.69426 1.39570 1.42625 1.50665 1.67389 2.39995 2.86555 3.10587 3.56149 3.65813 3.84665 3.99412 4.01534 4.09016 4.23277 4.28830 4.30783 4.46334 4.56430 4.58159 4.61148 4.72802 4.79599 4.80163 4.84491 4.89596 4.95377 5.05993 5.09511 5.11332 5.18563 5.31860 5.36743 5.46626 5.65825 5.80133 6.20421 6.32125 6.81441 7.35250 8.89016 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.063691 B = 0.002846 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.514703 B = 9836.472613 C =10119.076513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.136 4.136 5 C -0.068 4.068 6 H 0.078 0.922 7 C -0.071 4.071 8 S -0.290 6.290 9 C -0.070 4.070 10 C -0.080 4.080 11 C 0.031 3.969 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.150 4.150 21 C 0.063 3.937 22 O -0.400 6.400 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.054 0.946 34 H -0.005 1.005 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 9.781 15.000 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.081 0.919 4 C -0.175 4.175 5 C -0.088 4.088 6 H 0.097 0.903 7 C -0.219 4.219 8 S -0.062 6.062 9 C -0.218 4.218 10 C -0.119 4.119 11 C -0.008 4.008 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.188 4.188 21 C -0.014 4.014 22 O -0.319 6.319 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.789 10.102 15.688 25.100 hybrid contribution 0.444 -0.915 -1.580 1.879 sum -16.345 9.187 14.108 23.464 Atomic orbital electron populations 1.21781 0.91936 1.02983 1.03297 1.22242 0.95943 0.95041 0.84410 0.91932 1.22267 0.93489 1.02397 0.99334 1.20952 0.95966 0.99262 0.92581 0.90336 1.23485 0.91775 1.04146 1.02530 1.86755 1.09327 1.71649 1.38423 1.23344 1.00412 1.01170 0.96844 1.21162 0.91717 1.00218 0.98776 1.18978 0.95357 0.94014 0.92454 1.21641 0.93377 1.32736 1.10721 0.92274 1.25979 1.03545 0.94815 0.95393 1.70080 1.37264 1.34806 1.15117 0.85490 0.79131 0.78605 0.77788 1.19165 1.20652 1.19152 1.22263 1.01638 1.00191 0.94660 1.22624 0.80274 0.99995 0.98492 1.87904 1.21784 1.78386 1.43875 0.91796 0.89373 0.92209 0.89229 0.91062 0.89269 0.89940 0.90496 0.90388 0.92658 0.92696 0.98628 0.98571 0.92645 0.91505 0.90560 0.87883 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 71.98 0.69 -1.01 16 2 C 0.08 1.23 3.26 30.63 0.10 1.33 16 3 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.14 -2.02 4.71 30.68 0.14 -1.88 16 5 C -0.07 -1.24 2.28 -10.67 -0.02 -1.26 16 6 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 7 C -0.07 -1.53 5.39 71.98 0.39 -1.14 16 8 S -0.29 -8.49 20.61 -56.49 -1.16 -9.66 16 9 C -0.07 -2.41 5.94 71.98 0.43 -1.98 16 10 C -0.08 -3.40 5.16 30.60 0.16 -3.24 16 11 C 0.03 1.64 4.97 29.85 0.15 1.79 16 12 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 16 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C -0.15 -2.83 5.19 30.68 0.16 -2.68 16 21 C 0.06 1.07 6.84 72.01 0.49 1.56 16 22 O -0.40 -7.79 10.41 -148.98 -1.55 -9.34 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.33 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.61 7.26 -2.39 -0.02 1.59 16 39 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -64.13 332.91 3.93 -60.19 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.96 Total: 8.28 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.38 Total: -39.37 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -1.55 Total: -9.34 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -64.13 3.93 -60.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362457303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.197 kcal (2) G-P(sol) polarization free energy of solvation -64.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds