Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 110.26647 * 2 1 4 4 C 1.54488 * 110.29615 * 237.83752 * 2 1 3 5 5 C 1.53705 * 102.23067 * 215.33870 * 4 2 1 6 6 C 1.53460 * 110.41439 * 145.84780 * 5 4 2 7 7 C 1.54977 * 103.90866 * 122.87607 * 6 5 4 8 8 C 1.55044 * 102.11566 * 20.84637 * 7 6 5 9 9 H 1.09002 * 110.59544 * 81.91814 * 8 7 6 10 10 C 1.50694 * 110.59938 * 204.85750 * 8 7 6 11 11 H 1.08003 * 119.99525 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00431 * 180.02562 * 10 8 7 13 13 N 1.31506 * 119.99695 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00034 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47341 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47171 * 119.99959 * 14 12 10 17 17 H 1.48500 * 109.47130 * 239.99797 * 14 12 10 18 18 O 1.43043 * 110.65699 * 265.44409 * 5 4 2 19 19 C 1.50761 * 105.88063 * 25.87287 * 5 4 2 20 20 C 1.38525 * 130.78084 * 163.07133 * 19 5 4 21 21 C 1.38071 * 120.29107 * 180.02562 * 20 19 5 22 22 C 1.38251 * 119.94561 * 359.97438 * 21 20 19 23 23 C 1.38099 * 119.90659 * 0.03039 * 22 21 20 24 24 C 1.38388 * 109.48219 * 343.10735 * 19 5 4 25 25 H 1.08997 * 109.46693 * 299.39558 * 1 2 3 26 26 H 1.09000 * 109.46845 * 59.39807 * 1 2 3 27 27 H 1.09000 * 109.46851 * 179.39894 * 1 2 3 28 28 H 1.08991 * 110.85531 * 97.14785 * 4 2 1 29 29 H 1.09005 * 110.85032 * 333.51775 * 4 2 1 30 30 H 1.09001 * 110.54389 * 4.26512 * 6 5 4 31 31 H 1.09005 * 110.53787 * 241.48307 * 6 5 4 32 32 H 1.09000 * 110.86983 * 139.00395 * 7 6 5 33 33 H 1.08994 * 110.87000 * 262.68928 * 7 6 5 34 34 H 0.97000 * 120.00285 * 180.02562 * 13 12 10 35 35 H 1.07997 * 119.85170 * 0.02760 * 20 19 5 36 36 H 1.08002 * 120.02576 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.04992 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.87212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9076 1.0224 0.0000 4 6 2.0659 -0.7713 -1.2266 5 6 3.3282 -1.4432 -0.6628 6 6 3.5403 -2.8162 -1.3146 7 6 4.9580 -2.7199 -1.9331 8 6 5.5880 -1.5573 -1.1236 9 1 5.9649 -1.9169 -0.1661 10 6 6.6881 -0.8964 -1.9134 11 1 6.9332 -1.2549 -2.9023 12 6 7.3825 0.1653 -1.3733 13 7 7.0844 0.6015 -0.1690 14 14 8.7466 0.9840 -2.3522 15 1 8.8847 0.3100 -3.6683 16 1 8.4147 2.4162 -2.5614 17 1 10.0253 0.8763 -1.6048 18 8 4.4852 -0.6441 -0.9253 19 6 3.0929 -1.5851 0.8195 20 6 3.7275 -2.3740 1.7650 21 6 3.3293 -2.3336 3.0864 22 6 2.2932 -1.5024 3.4699 23 6 1.6584 -0.7147 2.5298 24 6 2.0553 -0.7539 1.2038 25 1 -0.3632 0.5044 0.8953 26 1 -0.3633 0.5232 -0.8846 27 1 -0.3633 -1.0276 -0.0108 28 1 2.3194 -0.0861 -2.0354 29 1 1.3453 -1.5179 -1.5606 30 1 2.7953 -2.9903 -2.0909 31 1 3.5034 -3.6057 -0.5638 32 1 5.5125 -3.6456 -1.7792 33 1 4.9032 -2.4703 -2.9927 34 1 7.5726 1.3486 0.2109 35 1 4.5372 -3.0235 1.4671 36 1 3.8268 -2.9508 3.8199 37 1 1.9807 -1.4691 4.5031 38 1 0.8489 -0.0659 2.8299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383759912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -28.336368 kcal Electronic energy + Delta-G solvation = -19743.536216 eV Core-core repulsion = 16936.108699 eV Total energy + Delta-G solvation = -2807.427517 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28643 -37.50325 -35.17617 -32.64067 -31.26570 -30.63853 -29.27641 -28.56903 -26.43990 -24.03517 -22.26028 -22.16296 -20.24548 -19.90120 -19.29459 -16.54640 -16.21989 -15.19918 -14.80490 -14.69150 -14.50020 -14.30408 -13.71934 -13.23139 -12.92224 -12.72831 -12.47757 -12.12097 -11.99122 -11.81623 -11.51113 -11.34865 -11.01206 -10.92241 -10.71893 -10.56944 -10.39490 -10.23975 -10.07782 -9.91391 -9.59373 -9.08958 -8.61152 -8.35514 -8.15461 -7.99194 -6.01543 -4.14749 1.81753 1.85318 3.29824 3.37713 3.41292 4.20133 4.41892 4.76441 4.94361 5.09417 5.28241 5.30561 5.36664 5.47370 5.53550 5.64905 5.66783 5.73434 5.86088 5.91630 5.95858 6.08979 6.13326 6.27160 6.32264 6.36911 6.41857 6.48779 6.60434 6.68087 6.75423 6.76212 6.84858 6.89178 6.99156 7.22788 7.45571 7.53804 7.88726 8.23553 8.59754 8.97981 9.55917 11.05782 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.006853 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.192750 B = 4085.058043 C = 4299.006896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 H 0.087 0.913 4 C -0.107 4.107 5 C 0.133 3.867 6 C -0.144 4.144 7 C -0.148 4.148 8 C 0.208 3.792 9 H 0.028 0.972 10 C -0.529 4.529 11 H 0.064 0.936 12 C 0.077 3.923 13 N -0.861 5.861 14 Si 0.892 3.108 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.283 1.283 18 O -0.334 6.334 19 C -0.083 4.083 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.084 4.084 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.261 0.739 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 -4.539 3.057 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.070 4.070 3 H 0.105 0.895 4 C -0.145 4.145 5 C 0.091 3.909 6 C -0.182 4.182 7 C -0.186 4.186 8 C 0.154 3.846 9 H 0.046 0.954 10 C -0.567 4.567 11 H 0.083 0.917 12 C -0.129 4.129 13 N -0.497 5.497 14 Si 0.719 3.281 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.209 1.209 18 O -0.253 6.253 19 C -0.084 4.084 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.133 4.133 24 C -0.084 4.084 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.355 -4.181 3.182 12.511 hybrid contribution 0.839 0.336 -0.229 0.932 sum -10.516 -3.845 2.953 11.580 Atomic orbital electron populations 1.21787 0.94883 1.01595 1.01359 1.20686 0.94916 0.99493 0.91951 0.89485 1.22458 0.95402 0.99322 0.97268 1.20820 0.90329 0.91490 0.88241 1.22960 0.98738 0.96943 0.99575 1.23258 0.94063 1.00446 1.00834 1.20744 0.85065 0.85119 0.93721 0.95398 1.21034 1.15148 1.17627 1.02854 0.91746 1.25098 0.96634 0.96493 0.94704 1.70051 1.39634 1.25172 1.14834 0.86559 0.81695 0.79499 0.80358 1.19575 1.20834 1.20896 1.89264 1.15521 1.30434 1.90097 1.21020 0.94985 0.95399 0.96985 1.20646 0.98756 0.99059 0.92448 1.20939 0.97895 1.00038 0.95667 1.20891 0.97274 0.97685 0.98669 1.20469 1.00620 1.00165 0.92009 1.20602 0.96784 0.97006 0.93996 0.92881 0.92551 0.92747 0.89774 0.90886 0.91740 0.91843 0.92268 0.91662 0.92947 0.86565 0.86466 0.86580 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.99 37.16 0.33 -1.40 16 2 C -0.05 -0.86 3.47 -90.62 -0.31 -1.17 16 3 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 4 C -0.11 -1.85 5.74 -25.58 -0.15 -2.00 16 5 C 0.13 2.72 0.99 -91.14 -0.09 2.63 16 6 C -0.14 -2.67 6.21 -25.45 -0.16 -2.83 16 7 C -0.15 -3.12 6.56 -24.61 -0.16 -3.28 16 8 C 0.21 5.43 3.09 -26.81 -0.08 5.35 16 9 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 10 C -0.53 -14.98 8.81 -34.44 -0.30 -15.28 16 11 H 0.06 1.77 7.76 -52.48 -0.41 1.36 16 12 C 0.08 2.20 5.44 -17.82 -0.10 2.10 16 13 N -0.86 -25.91 13.12 55.43 0.73 -25.19 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 O -0.33 -8.75 10.37 -35.23 -0.37 -9.12 16 19 C -0.08 -1.66 5.24 -104.43 -0.55 -2.21 16 20 C -0.09 -1.71 9.36 -39.54 -0.37 -2.08 16 21 C -0.13 -2.06 10.04 -39.64 -0.40 -2.46 16 22 C -0.13 -1.91 10.05 -39.63 -0.40 -2.31 16 23 C -0.11 -1.81 9.76 -39.55 -0.39 -2.20 16 24 C -0.08 -1.50 5.61 -104.12 -0.58 -2.09 16 25 H 0.05 0.60 7.93 -51.93 -0.41 0.19 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 29 H 0.07 1.08 7.36 -51.93 -0.38 0.70 16 30 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 31 H 0.06 1.09 7.20 -51.93 -0.37 0.72 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.36 8.03 -51.93 -0.42 0.95 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 2.16 8.00 -52.49 -0.42 1.74 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.48 7.88 -52.49 -0.41 1.07 16 LS Contribution 308.53 15.07 4.65 4.65 Total: -1.00 -31.35 308.53 -9.44 -40.79 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.73 Total: 1.57 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -3.70 Total: -29.22 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.19 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.37 Total: -9.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.35 -9.44 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383759912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.457 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds