Wall clock time and date at job start Mon Mar 30 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 110.26647 * 2 1 4 4 C 1.54488 * 110.29615 * 237.83752 * 2 1 3 5 5 C 1.53705 * 102.23067 * 215.33870 * 4 2 1 6 6 C 1.53460 * 110.41439 * 145.84780 * 5 4 2 7 7 C 1.54977 * 103.90866 * 122.87607 * 6 5 4 8 8 C 1.55044 * 102.11566 * 20.84637 * 7 6 5 9 9 H 1.09002 * 110.59544 * 81.91814 * 8 7 6 10 10 C 1.50694 * 110.59938 * 204.85750 * 8 7 6 11 11 H 1.08003 * 119.99525 * 359.97438 * 10 8 7 12 12 C 1.37879 * 120.00431 * 180.02562 * 10 8 7 13 13 N 1.31506 * 119.99695 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00034 * 179.97438 * 12 10 8 15 15 H 1.48508 * 109.47341 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47171 * 119.99959 * 14 12 10 17 17 H 1.48500 * 109.47130 * 239.99797 * 14 12 10 18 18 O 1.43043 * 110.65699 * 265.44409 * 5 4 2 19 19 C 1.50761 * 105.88063 * 25.87287 * 5 4 2 20 20 C 1.38525 * 130.78084 * 163.07133 * 19 5 4 21 21 C 1.38071 * 120.29107 * 180.02562 * 20 19 5 22 22 C 1.38251 * 119.94561 * 359.97438 * 21 20 19 23 23 C 1.38099 * 119.90659 * 0.03039 * 22 21 20 24 24 C 1.38388 * 109.48219 * 343.10735 * 19 5 4 25 25 H 1.08997 * 109.46693 * 299.39558 * 1 2 3 26 26 H 1.09000 * 109.46845 * 59.39807 * 1 2 3 27 27 H 1.09000 * 109.46851 * 179.39894 * 1 2 3 28 28 H 1.08991 * 110.85531 * 97.14785 * 4 2 1 29 29 H 1.09005 * 110.85032 * 333.51775 * 4 2 1 30 30 H 1.09001 * 110.54389 * 4.26512 * 6 5 4 31 31 H 1.09005 * 110.53787 * 241.48307 * 6 5 4 32 32 H 1.09000 * 110.86983 * 139.00395 * 7 6 5 33 33 H 1.08994 * 110.87000 * 262.68928 * 7 6 5 34 34 H 0.97000 * 120.00285 * 180.02562 * 13 12 10 35 35 H 1.07997 * 119.85170 * 0.02760 * 20 19 5 36 36 H 1.08002 * 120.02576 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.04992 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.87212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9076 1.0224 0.0000 4 6 2.0659 -0.7713 -1.2266 5 6 3.3282 -1.4432 -0.6628 6 6 3.5403 -2.8162 -1.3146 7 6 4.9580 -2.7199 -1.9331 8 6 5.5880 -1.5573 -1.1236 9 1 5.9649 -1.9169 -0.1661 10 6 6.6881 -0.8964 -1.9134 11 1 6.9332 -1.2549 -2.9023 12 6 7.3825 0.1653 -1.3733 13 7 7.0844 0.6015 -0.1690 14 14 8.7466 0.9840 -2.3522 15 1 8.8847 0.3100 -3.6683 16 1 8.4147 2.4162 -2.5614 17 1 10.0253 0.8763 -1.6048 18 8 4.4852 -0.6441 -0.9253 19 6 3.0929 -1.5851 0.8195 20 6 3.7275 -2.3740 1.7650 21 6 3.3293 -2.3336 3.0864 22 6 2.2932 -1.5024 3.4699 23 6 1.6584 -0.7147 2.5298 24 6 2.0553 -0.7539 1.2038 25 1 -0.3632 0.5044 0.8953 26 1 -0.3633 0.5232 -0.8846 27 1 -0.3633 -1.0276 -0.0108 28 1 2.3194 -0.0861 -2.0354 29 1 1.3453 -1.5179 -1.5606 30 1 2.7953 -2.9903 -2.0909 31 1 3.5034 -3.6057 -0.5638 32 1 5.5125 -3.6456 -1.7792 33 1 4.9032 -2.4703 -2.9927 34 1 7.5726 1.3486 0.2109 35 1 4.5372 -3.0235 1.4671 36 1 3.8268 -2.9508 3.8199 37 1 1.9807 -1.4691 4.5031 38 1 0.8489 -0.0659 2.8299 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383759912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:53 Heat of formation + Delta-G solvation = -45.586992 kcal Electronic energy + Delta-G solvation = -19744.284259 eV Core-core repulsion = 16936.108699 eV Total energy + Delta-G solvation = -2808.175560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72419 -39.08842 -36.53543 -34.69071 -32.90690 -32.22887 -30.51098 -30.09560 -28.14277 -25.65021 -23.72961 -23.58226 -22.03587 -21.19772 -20.78251 -18.66985 -17.61134 -16.88726 -16.55116 -16.11662 -16.03526 -15.67527 -15.28710 -14.61196 -14.44771 -14.33136 -13.86462 -13.65448 -13.45209 -13.29662 -12.93265 -12.87644 -12.66205 -12.41774 -12.22121 -12.13315 -12.10374 -11.87871 -11.54603 -11.45534 -11.14518 -11.01326 -10.74597 -9.98764 -9.67680 -9.42397 -8.18460 -6.39729 0.50089 0.53218 1.37756 1.38937 1.51867 2.38010 2.85073 3.06582 3.45314 3.60981 3.75943 3.98378 4.07034 4.10219 4.18552 4.26485 4.36013 4.38965 4.57512 4.61183 4.67331 4.75099 4.85487 4.89703 4.93542 4.98465 5.05415 5.11195 5.18437 5.21489 5.25740 5.36778 5.44191 5.53045 5.61094 5.66430 5.72269 5.87716 6.14585 6.18146 6.58881 6.95301 7.36012 8.89663 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.006853 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.192750 B = 4085.058043 C = 4299.006896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.052 4.052 3 H 0.065 0.935 4 C -0.104 4.104 5 C 0.115 3.885 6 C -0.134 4.134 7 C -0.140 4.140 8 C 0.205 3.795 9 H -0.011 1.011 10 C -0.552 4.552 11 H 0.067 0.933 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.964 3.036 15 H -0.259 1.259 16 H -0.281 1.281 17 H -0.275 1.275 18 O -0.372 6.372 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.097 4.097 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 -4.743 3.307 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.070 4.070 3 H 0.083 0.917 4 C -0.141 4.141 5 C 0.075 3.925 6 C -0.171 4.171 7 C -0.178 4.178 8 C 0.149 3.851 9 H 0.007 0.993 10 C -0.589 4.589 11 H 0.085 0.915 12 C -0.181 4.181 13 N -0.540 5.540 14 Si 0.788 3.212 15 H -0.183 1.183 16 H -0.206 1.206 17 H -0.201 1.201 18 O -0.292 6.292 19 C -0.119 4.119 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.138 4.138 23 C -0.134 4.134 24 C -0.097 4.097 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.146 -4.403 3.421 14.279 hybrid contribution 1.363 0.365 -0.217 1.427 sum -11.783 -4.038 3.204 12.861 Atomic orbital electron populations 1.21722 0.91476 1.02585 1.02812 1.20677 0.97662 0.97760 0.90937 0.91667 1.22486 0.94548 0.99754 0.97291 1.21224 0.89542 0.92065 0.89676 1.22930 0.97617 0.96348 1.00238 1.23128 0.95592 0.98986 1.00116 1.20543 0.85500 0.86650 0.92375 0.99297 1.21479 1.16363 1.17929 1.03103 0.91502 1.26009 0.99254 0.97163 0.95681 1.70206 1.41216 1.25868 1.16717 0.85437 0.78446 0.78138 0.79178 1.18318 1.20649 1.20057 1.89145 1.17227 1.32189 1.90648 1.21118 0.96710 0.97326 0.96787 1.20781 0.99043 0.99758 0.93969 1.21282 0.98280 1.00474 0.94900 1.21372 0.95941 0.96042 1.00436 1.20889 1.01142 1.00230 0.91141 1.20916 0.96556 0.96787 0.95477 0.91491 0.91115 0.91888 0.91070 0.87886 0.88854 0.90936 0.90983 0.91573 0.93027 0.88090 0.83999 0.82701 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.99 71.98 0.65 -2.21 16 2 C -0.05 -1.66 3.47 -10.80 -0.04 -1.70 16 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.10 -3.53 5.74 31.34 0.18 -3.35 16 5 C 0.12 4.83 0.99 -11.13 -0.01 4.81 16 6 C -0.13 -4.91 6.21 31.42 0.20 -4.71 16 7 C -0.14 -6.01 6.56 31.97 0.21 -5.80 16 8 C 0.20 11.17 3.09 30.55 0.09 11.27 16 9 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 10 C -0.55 -32.28 8.81 25.60 0.23 -32.06 16 11 H 0.07 3.75 7.76 -2.91 -0.02 3.73 16 12 C 0.02 1.22 5.44 84.66 0.46 1.69 16 13 N -0.90 -56.58 13.12 21.45 0.28 -56.30 16 14 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 O -0.37 -20.41 10.37 -148.98 -1.54 -21.95 16 19 C -0.12 -4.81 5.24 -19.74 -0.10 -4.91 16 20 C -0.12 -4.52 9.36 22.30 0.21 -4.31 16 21 C -0.13 -4.10 10.04 22.23 0.22 -3.88 16 22 C -0.12 -3.28 10.05 22.24 0.22 -3.06 16 23 C -0.12 -3.39 9.76 22.29 0.22 -3.17 16 24 C -0.10 -3.40 5.61 -19.54 -0.11 -3.51 16 25 H 0.07 1.30 7.93 -2.39 -0.02 1.28 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 29 H 0.10 2.82 7.36 -2.38 -0.02 2.80 16 30 H 0.09 2.84 7.43 -2.39 -0.02 2.82 16 31 H 0.07 2.49 7.20 -2.38 -0.02 2.48 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.78 8.03 -2.39 -0.02 2.76 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.10 4.03 8.00 -2.91 -0.02 4.00 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.14 3.22 7.88 -2.91 -0.02 3.20 16 Total: -1.00 -71.36 308.53 4.41 -66.94 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.03 Total: 19.00 kcal Atomic # 6 Polarization: -57.52 SS G_CDS: 2.62 Total: -54.90 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.54 Total: -21.95 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.36 4.41 -66.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383759912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.357 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds