Wall clock time and date at job start Mon Mar 30 2020 06:29:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 110.34200 * 2 1
4 4 C 1.54481 * 110.29856 * 237.88432 * 2 1 3
5 5 C 1.53706 * 102.22527 * 266.85839 * 4 2 1
6 6 C 1.53472 * 110.39949 * 214.14693 * 5 4 2
7 7 C 1.54981 * 103.90433 * 240.58330 * 6 5 4
8 8 C 1.55052 * 102.10185 * 20.87235 * 7 6 5
9 9 H 1.08996 * 110.59749 * 82.03960 * 8 7 6
10 10 C 1.50708 * 110.59401 * 204.82571 * 8 7 6
11 11 H 1.07996 * 120.00053 * 0.02562 * 10 8 7
12 12 C 1.37879 * 119.99783 * 179.97438 * 10 8 7
13 13 N 1.31515 * 119.99989 * 359.97438 * 12 10 8
14 14 Si 1.86800 * 119.99941 * 179.97438 * 12 10 8
15 15 H 1.48500 * 109.46933 * 89.99853 * 14 12 10
16 16 H 1.48498 * 109.46990 * 210.00152 * 14 12 10
17 17 H 1.48504 * 109.47087 * 329.99990 * 14 12 10
18 18 O 1.43034 * 110.65213 * 94.56635 * 5 4 2
19 19 C 1.50764 * 105.87822 * 334.10623 * 5 4 2
20 20 C 1.38513 * 130.79067 * 196.90797 * 19 5 4
21 21 C 1.38085 * 120.29420 * 179.97438 * 20 19 5
22 22 C 1.38255 * 119.94326 * 0.02562 * 21 20 19
23 23 C 1.38093 * 119.90175 * 359.97438 * 22 21 20
24 24 C 1.38394 * 109.47662 * 16.86498 * 19 5 4
25 25 H 1.09004 * 109.47417 * 299.34566 * 1 2 3
26 26 H 1.08999 * 109.47412 * 59.34166 * 1 2 3
27 27 H 1.09004 * 109.47448 * 179.34123 * 1 2 3
28 28 H 1.09002 * 110.85458 * 148.67204 * 4 2 1
29 29 H 1.08997 * 111.02998 * 25.12076 * 4 2 1
30 30 H 1.09003 * 110.54103 * 359.18490 * 6 5 4
31 31 H 1.08993 * 110.54712 * 121.83507 * 6 5 4
32 32 H 1.09000 * 110.90377 * 139.06961 * 7 6 5
33 33 H 1.08997 * 110.90412 * 262.63872 * 7 6 5
34 34 H 0.96994 * 119.99678 * 179.97438 * 13 12 10
35 35 H 1.07994 * 119.85361 * 359.93477 * 20 19 5
36 36 H 1.08002 * 120.02645 * 180.28240 * 21 20 19
37 37 H 1.07998 * 120.04312 * 179.97438 * 22 21 20
38 38 H 1.08001 * 119.86559 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9089 1.0220 0.0000
4 6 2.0659 -0.7703 -1.2272
5 6 2.2560 -2.1878 -0.6641
6 6 3.4690 -2.8644 -1.3169
7 6 2.8695 -4.1129 -2.0125
8 6 1.3741 -3.7248 -2.1443
9 1 1.2178 -3.0915 -3.0175
10 6 0.5115 -4.9580 -2.2244
11 1 0.9648 -5.9375 -2.1865
12 6 -0.8566 -4.8357 -2.3451
13 7 -1.4087 -3.6429 -2.3897
14 14 -1.9257 -6.3642 -2.4452
15 1 -2.3324 -6.7742 -1.0771
16 1 -3.1358 -6.0698 -3.2541
17 1 -1.1588 -7.4638 -3.0840
18 8 1.1040 -2.9937 -0.9269
19 6 2.4720 -2.0173 0.8182
20 6 2.9905 -2.8873 1.7631
21 6 3.0922 -2.5004 3.0847
22 6 2.6748 -1.2395 3.4687
23 6 2.1575 -0.3698 2.5290
24 6 2.0553 -0.7550 1.2031
25 1 -0.3634 0.5036 0.8958
26 1 -0.3634 0.5240 -0.8840
27 1 -0.3634 -1.0276 -0.0118
28 1 3.0166 -0.3547 -1.5613
29 1 1.3377 -0.7694 -2.0381
30 1 3.9280 -2.2015 -2.0504
31 1 4.1965 -3.1580 -0.5602
32 1 3.3196 -4.2653 -2.9934
33 1 2.9883 -4.9996 -1.3899
34 1 -2.3711 -3.5569 -2.4750
35 1 3.3160 -3.8730 1.4650
36 1 3.5013 -3.1806 3.8171
37 1 2.7532 -0.9353 4.5020
38 1 1.8320 0.6152 2.8295
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383759913.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:29:56
Heat of formation + Delta-G solvation = -27.734467 kcal
Electronic energy + Delta-G solvation = -19836.884413 eV
Core-core repulsion = 17029.482996 eV
Total energy + Delta-G solvation = -2807.401417 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 258.136 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.32096 -37.61013 -35.03701 -32.61723 -31.30996 -30.58591 -29.24692 -28.35818
-26.42003 -24.11899 -22.35039 -22.20763 -20.30307 -19.88615 -19.17852 -16.64389
-15.98051 -15.40587 -14.84773 -14.68842 -14.34769 -14.13209 -13.62483 -13.35980
-12.87535 -12.55768 -12.49340 -12.29418 -11.81027 -11.73436 -11.37398 -11.36037
-10.93198 -10.75402 -10.62054 -10.53326 -10.35912 -10.29268 -10.18658 -9.89083
-9.53716 -9.12351 -8.58282 -8.44502 -8.17657 -8.02293 -6.03036 -4.14698
1.72151 1.75953 3.31066 3.37569 3.39809 4.10074 4.41693 4.77165
4.91032 5.17016 5.28612 5.31305 5.40533 5.45757 5.61551 5.66951
5.76261 5.81953 5.85783 5.92235 6.14446 6.21202 6.26231 6.32439
6.35906 6.39860 6.48853 6.54418 6.67024 6.72595 6.76097 6.80724
6.84137 6.96581 7.05303 7.17730 7.36808 7.52071 7.88139 8.23280
8.60679 8.97337 9.55532 11.04702
Molecular weight = 258.14amu
Principal moments of inertia in cm(-1)
A = 0.022567 B = 0.006947 C = 0.006770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1240.425561 B = 4029.513261 C = 4135.008921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.046 4.046
3 H 0.069 0.931
4 C -0.130 4.130
5 C 0.135 3.865
6 C -0.145 4.145
7 C -0.147 4.147
8 C 0.208 3.792
9 H 0.030 0.970
10 C -0.528 4.528
11 H 0.063 0.937
12 C 0.078 3.922
13 N -0.862 5.862
14 Si 0.891 3.109
15 H -0.279 1.279
16 H -0.285 1.285
17 H -0.273 1.273
18 O -0.332 6.332
19 C -0.068 4.068
20 C -0.093 4.093
21 C -0.129 4.129
22 C -0.126 4.126
23 C -0.115 4.115
24 C -0.082 4.082
25 H 0.043 0.957
26 H 0.055 0.945
27 H 0.079 0.921
28 H 0.065 0.935
29 H 0.087 0.913
30 H 0.064 0.936
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.063 0.937
34 H 0.261 0.739
35 H 0.118 0.882
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.075 6.494 6.418 12.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.065 4.065
3 H 0.087 0.913
4 C -0.168 4.168
5 C 0.094 3.906
6 C -0.183 4.183
7 C -0.185 4.185
8 C 0.153 3.847
9 H 0.048 0.952
10 C -0.565 4.565
11 H 0.081 0.919
12 C -0.128 4.128
13 N -0.498 5.498
14 Si 0.718 3.282
15 H -0.205 1.205
16 H -0.211 1.211
17 H -0.197 1.197
18 O -0.252 6.252
19 C -0.068 4.068
20 C -0.111 4.111
21 C -0.148 4.148
22 C -0.144 4.144
23 C -0.133 4.133
24 C -0.082 4.082
25 H 0.062 0.938
26 H 0.074 0.926
27 H 0.098 0.902
28 H 0.084 0.916
29 H 0.106 0.894
30 H 0.082 0.918
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.082 0.918
34 H 0.071 0.929
35 H 0.136 0.864
36 H 0.136 0.864
37 H 0.135 0.865
38 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 7.707 6.585 6.509 12.046
hybrid contribution -0.455 -0.773 0.001 0.897
sum 7.252 5.811 6.509 11.346
Atomic orbital electron populations
1.21750 0.93256 1.04072 1.00340 1.20600 0.96603 0.97649 0.91625
0.91287 1.22840 1.00936 0.95366 0.97610 1.20768 0.89039 0.91953
0.88829 1.22966 0.97542 0.98273 0.99489 1.23250 0.99513 0.96583
0.99164 1.20744 0.88492 0.91040 0.84439 0.95244 1.20998 0.91706
0.91536 1.52257 0.91894 1.25065 0.98191 0.95855 0.93677 1.70015
1.10936 1.21915 1.46980 0.86625 0.80013 0.83380 0.78148 1.20503
1.21105 1.19745 1.89273 1.33216 1.57529 1.45156 1.20530 0.96825
0.93823 0.95634 1.20636 0.99134 0.99000 0.92329 1.20944 1.01642
0.96530 0.95635 1.20914 1.00400 0.94322 0.98749 1.20511 1.01151
0.99637 0.92012 1.20707 0.97386 0.95923 0.94152 0.93768 0.92643
0.90230 0.91620 0.89407 0.91768 0.91903 0.92230 0.91848 0.92919
0.86434 0.86393 0.86489 0.86841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.42 9.15 37.16 0.34 -2.08 16
2 C -0.05 -0.78 3.47 -90.63 -0.31 -1.10 16
3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
4 C -0.13 -2.36 5.75 -25.59 -0.15 -2.51 16
5 C 0.14 2.76 0.99 -91.13 -0.09 2.67 16
6 C -0.14 -2.68 6.23 -25.44 -0.16 -2.84 16
7 C -0.15 -3.08 6.56 -24.60 -0.16 -3.24 16
8 C 0.21 5.32 3.09 -26.79 -0.08 5.24 16
9 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16
10 C -0.53 -14.78 8.81 -34.44 -0.30 -15.08 16
11 H 0.06 1.72 7.76 -52.49 -0.41 1.31 16
12 C 0.08 2.20 5.44 -17.82 -0.10 2.10 16
13 N -0.86 -25.21 13.12 55.43 0.73 -24.49 16
14 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16
15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
18 O -0.33 -8.52 9.94 -35.23 -0.35 -8.87 16
19 C -0.07 -1.30 5.26 -104.43 -0.55 -1.85 16
20 C -0.09 -1.62 9.35 -39.54 -0.37 -1.99 16
21 C -0.13 -1.92 10.04 -39.63 -0.40 -2.32 16
22 C -0.13 -1.77 10.05 -39.63 -0.40 -2.17 16
23 C -0.12 -1.75 10.03 -39.55 -0.40 -2.15 16
24 C -0.08 -1.43 5.46 -104.12 -0.57 -2.00 16
25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
27 H 0.08 1.74 7.71 -51.93 -0.40 1.34 16
28 H 0.07 1.03 7.56 -51.93 -0.39 0.64 16
29 H 0.09 1.75 7.86 -51.93 -0.41 1.34 16
30 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16
31 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16
32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
33 H 0.06 1.33 8.03 -51.93 -0.42 0.92 16
34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
35 H 0.12 1.98 7.94 -52.49 -0.42 1.56 16
36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16
37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16
38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16
LS Contribution 308.19 15.07 4.64 4.64
Total: -1.00 -30.17 308.19 -9.41 -39.58
By element:
Atomic # 1 Polarization: 7.76 SS G_CDS: -5.71 Total: 2.05 kcal
Atomic # 6 Polarization: -25.62 SS G_CDS: -3.70 Total: -29.31 kcal
Atomic # 7 Polarization: -25.21 SS G_CDS: 0.73 Total: -24.49 kcal
Atomic # 8 Polarization: -8.52 SS G_CDS: -0.35 Total: -8.87 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -30.17 -9.41 -39.58 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383759913.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.849 kcal
(2) G-P(sol) polarization free energy of solvation -30.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds