Wall clock time and date at job start Mon Mar 30 2020 06:29:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 110.34200 * 2 1
4 4 C 1.54481 * 110.29856 * 237.88432 * 2 1 3
5 5 C 1.53706 * 102.22527 * 266.85839 * 4 2 1
6 6 C 1.53472 * 110.39949 * 214.14693 * 5 4 2
7 7 C 1.54981 * 103.90433 * 240.58330 * 6 5 4
8 8 C 1.55052 * 102.10185 * 20.87235 * 7 6 5
9 9 H 1.08996 * 110.59749 * 82.03960 * 8 7 6
10 10 C 1.50708 * 110.59401 * 204.82571 * 8 7 6
11 11 H 1.07996 * 120.00053 * 0.02562 * 10 8 7
12 12 C 1.37879 * 119.99783 * 179.97438 * 10 8 7
13 13 N 1.31515 * 119.99989 * 359.97438 * 12 10 8
14 14 Si 1.86800 * 119.99941 * 179.97438 * 12 10 8
15 15 H 1.48500 * 109.46933 * 89.99853 * 14 12 10
16 16 H 1.48498 * 109.46990 * 210.00152 * 14 12 10
17 17 H 1.48504 * 109.47087 * 329.99990 * 14 12 10
18 18 O 1.43034 * 110.65213 * 94.56635 * 5 4 2
19 19 C 1.50764 * 105.87822 * 334.10623 * 5 4 2
20 20 C 1.38513 * 130.79067 * 196.90797 * 19 5 4
21 21 C 1.38085 * 120.29420 * 179.97438 * 20 19 5
22 22 C 1.38255 * 119.94326 * 0.02562 * 21 20 19
23 23 C 1.38093 * 119.90175 * 359.97438 * 22 21 20
24 24 C 1.38394 * 109.47662 * 16.86498 * 19 5 4
25 25 H 1.09004 * 109.47417 * 299.34566 * 1 2 3
26 26 H 1.08999 * 109.47412 * 59.34166 * 1 2 3
27 27 H 1.09004 * 109.47448 * 179.34123 * 1 2 3
28 28 H 1.09002 * 110.85458 * 148.67204 * 4 2 1
29 29 H 1.08997 * 111.02998 * 25.12076 * 4 2 1
30 30 H 1.09003 * 110.54103 * 359.18490 * 6 5 4
31 31 H 1.08993 * 110.54712 * 121.83507 * 6 5 4
32 32 H 1.09000 * 110.90377 * 139.06961 * 7 6 5
33 33 H 1.08997 * 110.90412 * 262.63872 * 7 6 5
34 34 H 0.96994 * 119.99678 * 179.97438 * 13 12 10
35 35 H 1.07994 * 119.85361 * 359.93477 * 20 19 5
36 36 H 1.08002 * 120.02645 * 180.28240 * 21 20 19
37 37 H 1.07998 * 120.04312 * 179.97438 * 22 21 20
38 38 H 1.08001 * 119.86559 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9089 1.0220 0.0000
4 6 2.0659 -0.7703 -1.2272
5 6 2.2560 -2.1878 -0.6641
6 6 3.4690 -2.8644 -1.3169
7 6 2.8695 -4.1129 -2.0125
8 6 1.3741 -3.7248 -2.1443
9 1 1.2178 -3.0915 -3.0175
10 6 0.5115 -4.9580 -2.2244
11 1 0.9648 -5.9375 -2.1865
12 6 -0.8566 -4.8357 -2.3451
13 7 -1.4087 -3.6429 -2.3897
14 14 -1.9257 -6.3642 -2.4452
15 1 -2.3324 -6.7742 -1.0771
16 1 -3.1358 -6.0698 -3.2541
17 1 -1.1588 -7.4638 -3.0840
18 8 1.1040 -2.9937 -0.9269
19 6 2.4720 -2.0173 0.8182
20 6 2.9905 -2.8873 1.7631
21 6 3.0922 -2.5004 3.0847
22 6 2.6748 -1.2395 3.4687
23 6 2.1575 -0.3698 2.5290
24 6 2.0553 -0.7550 1.2031
25 1 -0.3634 0.5036 0.8958
26 1 -0.3634 0.5240 -0.8840
27 1 -0.3634 -1.0276 -0.0118
28 1 3.0166 -0.3547 -1.5613
29 1 1.3377 -0.7694 -2.0381
30 1 3.9280 -2.2015 -2.0504
31 1 4.1965 -3.1580 -0.5602
32 1 3.3196 -4.2653 -2.9934
33 1 2.9883 -4.9996 -1.3899
34 1 -2.3711 -3.5569 -2.4750
35 1 3.3160 -3.8730 1.4650
36 1 3.5013 -3.1806 3.8171
37 1 2.7532 -0.9353 4.5020
38 1 1.8320 0.6152 2.8295
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000383759913.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:29:55
Heat of formation + Delta-G solvation = -43.808983 kcal
Electronic energy + Delta-G solvation = -19837.581456 eV
Core-core repulsion = 17029.482996 eV
Total energy + Delta-G solvation = -2808.098460 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 258.136 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.73288 -39.14018 -36.44176 -34.65316 -32.92108 -32.15334 -30.53506 -29.88730
-28.16777 -25.82587 -23.78038 -23.60258 -22.03240 -21.25163 -20.63917 -18.68094
-17.41257 -16.98979 -16.56753 -16.07767 -15.96628 -15.57692 -15.12922 -14.73451
-14.48132 -14.12849 -13.97743 -13.80998 -13.56784 -13.09163 -12.90323 -12.88080
-12.74424 -12.42271 -12.20365 -12.10560 -12.02421 -11.94360 -11.59379 -11.37206
-11.17592 -11.02274 -10.69332 -9.91938 -9.66343 -9.44350 -8.16925 -6.36470
0.48381 0.53798 1.38173 1.39976 1.50115 2.38923 2.83111 3.09738
3.46970 3.56836 3.81009 3.98459 4.08908 4.14924 4.21691 4.28774
4.35286 4.41474 4.54265 4.60344 4.70922 4.73329 4.83027 4.89088
4.95970 5.00941 5.04456 5.06780 5.14477 5.15585 5.30908 5.38074
5.49537 5.54183 5.63003 5.68769 5.74017 5.89237 6.16208 6.18288
6.61332 6.98557 7.38114 8.90974
Molecular weight = 258.14amu
Principal moments of inertia in cm(-1)
A = 0.022567 B = 0.006947 C = 0.006770
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1240.425561 B = 4029.513261 C = 4135.008921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.043 4.043
3 H 0.101 0.899
4 C -0.129 4.129
5 C 0.121 3.879
6 C -0.135 4.135
7 C -0.139 4.139
8 C 0.203 3.797
9 H -0.003 1.003
10 C -0.552 4.552
11 H 0.063 0.937
12 C 0.025 3.975
13 N -0.897 5.897
14 Si 0.959 3.041
15 H -0.279 1.279
16 H -0.278 1.278
17 H -0.261 1.261
18 O -0.367 6.367
19 C -0.102 4.102
20 C -0.113 4.113
21 C -0.128 4.128
22 C -0.118 4.118
23 C -0.117 4.117
24 C -0.096 4.096
25 H 0.066 0.934
26 H 0.058 0.942
27 H 0.027 0.973
28 H 0.092 0.908
29 H 0.058 0.942
30 H 0.084 0.916
31 H 0.079 0.921
32 H 0.075 0.925
33 H 0.058 0.942
34 H 0.261 0.739
35 H 0.112 0.888
36 H 0.148 0.852
37 H 0.156 0.844
38 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.306 7.177 8.416 14.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.062 4.062
3 H 0.120 0.880
4 C -0.167 4.167
5 C 0.081 3.919
6 C -0.173 4.173
7 C -0.177 4.177
8 C 0.147 3.853
9 H 0.015 0.985
10 C -0.589 4.589
11 H 0.081 0.919
12 C -0.178 4.178
13 N -0.535 5.535
14 Si 0.783 3.217
15 H -0.205 1.205
16 H -0.204 1.204
17 H -0.185 1.185
18 O -0.287 6.287
19 C -0.102 4.102
20 C -0.131 4.131
21 C -0.145 4.145
22 C -0.135 4.135
23 C -0.134 4.134
24 C -0.096 4.096
25 H 0.085 0.915
26 H 0.077 0.923
27 H 0.046 0.954
28 H 0.111 0.889
29 H 0.076 0.924
30 H 0.102 0.898
31 H 0.098 0.902
32 H 0.093 0.907
33 H 0.077 0.923
34 H 0.070 0.930
35 H 0.130 0.870
36 H 0.165 0.835
37 H 0.174 0.826
38 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 8.956 7.264 8.504 14.328
hybrid contribution -0.801 -0.942 -0.546 1.352
sum 8.155 6.323 7.958 13.031
Atomic orbital electron populations
1.21643 0.94432 1.00927 1.01619 1.20600 0.95537 0.99098 0.90916
0.88042 1.22801 1.01500 0.94908 0.97454 1.21087 0.87873 0.92251
0.90734 1.22943 0.97203 0.97133 1.00005 1.23117 0.96723 0.97580
1.00310 1.20565 0.91088 0.89905 0.83721 0.98545 1.21412 0.92664
0.92487 1.52338 0.91927 1.25922 0.99605 0.98942 0.93304 1.70158
1.11087 1.24066 1.48138 0.85565 0.78263 0.79758 0.78090 1.20475
1.20358 1.18470 1.89172 1.36257 1.58704 1.44573 1.20569 0.99273
0.95387 0.94988 1.20813 0.99994 0.98795 0.93545 1.21320 1.00753
0.97555 0.94912 1.21399 0.98281 0.93446 1.00392 1.20899 1.00387
1.01154 0.91008 1.20863 0.97924 0.95458 0.95351 0.91498 0.92337
0.95399 0.88945 0.92353 0.89754 0.90216 0.90658 0.92328 0.92986
0.86975 0.83453 0.82630 0.84010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.62 9.15 71.98 0.66 -3.96 16
2 C -0.04 -1.42 3.47 -10.80 -0.04 -1.46 16
3 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16
4 C -0.13 -4.75 5.75 31.34 0.18 -4.57 16
5 C 0.12 5.03 0.99 -11.12 -0.01 5.02 16
6 C -0.14 -4.96 6.23 31.43 0.20 -4.77 16
7 C -0.14 -5.95 6.56 31.97 0.21 -5.74 16
8 C 0.20 10.89 3.09 30.55 0.09 10.98 16
9 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
10 C -0.55 -32.10 8.81 25.60 0.23 -31.87 16
11 H 0.06 3.52 7.76 -2.91 -0.02 3.50 16
12 C 0.02 1.43 5.44 84.66 0.46 1.89 16
13 N -0.90 -54.90 13.12 21.45 0.28 -54.62 16
14 Si 0.96 45.04 29.54 68.60 2.03 47.06 16
15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
17 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16
18 O -0.37 -19.79 9.94 -148.98 -1.48 -21.28 16
19 C -0.10 -3.86 5.26 -19.74 -0.10 -3.97 16
20 C -0.11 -3.85 9.35 22.30 0.21 -3.64 16
21 C -0.13 -3.41 10.04 22.24 0.22 -3.19 16
22 C -0.12 -2.82 10.05 22.24 0.22 -2.60 16
23 C -0.12 -3.15 10.03 22.29 0.22 -2.92 16
24 C -0.10 -3.21 5.46 -19.54 -0.11 -3.32 16
25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
27 H 0.03 1.26 7.71 -2.39 -0.02 1.24 16
28 H 0.09 2.82 7.56 -2.39 -0.02 2.80 16
29 H 0.06 2.45 7.86 -2.39 -0.02 2.44 16
30 H 0.08 2.70 7.39 -2.39 -0.02 2.68 16
31 H 0.08 2.63 7.12 -2.39 -0.02 2.61 16
32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16
33 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16
34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16
35 H 0.11 3.77 7.94 -2.91 -0.02 3.75 16
36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16
37 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16
38 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16
Total: -1.00 -69.01 308.19 4.50 -64.52
By element:
Atomic # 1 Polarization: 17.39 SS G_CDS: 1.03 Total: 18.42 kcal
Atomic # 6 Polarization: -56.75 SS G_CDS: 2.64 Total: -54.11 kcal
Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.62 kcal
Atomic # 8 Polarization: -19.79 SS G_CDS: -1.48 Total: -21.28 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -69.01 4.50 -64.52 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383759913.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.706 kcal
(2) G-P(sol) polarization free energy of solvation -69.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.308 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds