Wall clock time and date at job start Mon Mar 30 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.34200 * 2 1 4 4 C 1.54481 * 110.29856 * 237.88432 * 2 1 3 5 5 C 1.53706 * 102.22527 * 266.85839 * 4 2 1 6 6 C 1.53472 * 110.39949 * 214.14693 * 5 4 2 7 7 C 1.54981 * 103.90433 * 240.58330 * 6 5 4 8 8 C 1.55052 * 102.10185 * 20.87235 * 7 6 5 9 9 H 1.08996 * 110.59749 * 82.03960 * 8 7 6 10 10 C 1.50708 * 110.59401 * 204.82571 * 8 7 6 11 11 H 1.07996 * 120.00053 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99783 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99989 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99941 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46933 * 89.99853 * 14 12 10 16 16 H 1.48498 * 109.46990 * 210.00152 * 14 12 10 17 17 H 1.48504 * 109.47087 * 329.99990 * 14 12 10 18 18 O 1.43034 * 110.65213 * 94.56635 * 5 4 2 19 19 C 1.50764 * 105.87822 * 334.10623 * 5 4 2 20 20 C 1.38513 * 130.79067 * 196.90797 * 19 5 4 21 21 C 1.38085 * 120.29420 * 179.97438 * 20 19 5 22 22 C 1.38255 * 119.94326 * 0.02562 * 21 20 19 23 23 C 1.38093 * 119.90175 * 359.97438 * 22 21 20 24 24 C 1.38394 * 109.47662 * 16.86498 * 19 5 4 25 25 H 1.09004 * 109.47417 * 299.34566 * 1 2 3 26 26 H 1.08999 * 109.47412 * 59.34166 * 1 2 3 27 27 H 1.09004 * 109.47448 * 179.34123 * 1 2 3 28 28 H 1.09002 * 110.85458 * 148.67204 * 4 2 1 29 29 H 1.08997 * 111.02998 * 25.12076 * 4 2 1 30 30 H 1.09003 * 110.54103 * 359.18490 * 6 5 4 31 31 H 1.08993 * 110.54712 * 121.83507 * 6 5 4 32 32 H 1.09000 * 110.90377 * 139.06961 * 7 6 5 33 33 H 1.08997 * 110.90412 * 262.63872 * 7 6 5 34 34 H 0.96994 * 119.99678 * 179.97438 * 13 12 10 35 35 H 1.07994 * 119.85361 * 359.93477 * 20 19 5 36 36 H 1.08002 * 120.02645 * 180.28240 * 21 20 19 37 37 H 1.07998 * 120.04312 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.86559 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0659 -0.7703 -1.2272 5 6 2.2560 -2.1878 -0.6641 6 6 3.4690 -2.8644 -1.3169 7 6 2.8695 -4.1129 -2.0125 8 6 1.3741 -3.7248 -2.1443 9 1 1.2178 -3.0915 -3.0175 10 6 0.5115 -4.9580 -2.2244 11 1 0.9648 -5.9375 -2.1865 12 6 -0.8566 -4.8357 -2.3451 13 7 -1.4087 -3.6429 -2.3897 14 14 -1.9257 -6.3642 -2.4452 15 1 -2.3324 -6.7742 -1.0771 16 1 -3.1358 -6.0698 -3.2541 17 1 -1.1588 -7.4638 -3.0840 18 8 1.1040 -2.9937 -0.9269 19 6 2.4720 -2.0173 0.8182 20 6 2.9905 -2.8873 1.7631 21 6 3.0922 -2.5004 3.0847 22 6 2.6748 -1.2395 3.4687 23 6 2.1575 -0.3698 2.5290 24 6 2.0553 -0.7550 1.2031 25 1 -0.3634 0.5036 0.8958 26 1 -0.3634 0.5240 -0.8840 27 1 -0.3634 -1.0276 -0.0118 28 1 3.0166 -0.3547 -1.5613 29 1 1.3377 -0.7694 -2.0381 30 1 3.9280 -2.2015 -2.0504 31 1 4.1965 -3.1580 -0.5602 32 1 3.3196 -4.2653 -2.9934 33 1 2.9883 -4.9996 -1.3899 34 1 -2.3711 -3.5569 -2.4750 35 1 3.3160 -3.8730 1.4650 36 1 3.5013 -3.1806 3.8171 37 1 2.7532 -0.9353 4.5020 38 1 1.8320 0.6152 2.8295 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383759913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:55 Heat of formation + Delta-G solvation = -43.808983 kcal Electronic energy + Delta-G solvation = -19837.581456 eV Core-core repulsion = 17029.482996 eV Total energy + Delta-G solvation = -2808.098460 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73288 -39.14018 -36.44176 -34.65316 -32.92108 -32.15334 -30.53506 -29.88730 -28.16777 -25.82587 -23.78038 -23.60258 -22.03240 -21.25163 -20.63917 -18.68094 -17.41257 -16.98979 -16.56753 -16.07767 -15.96628 -15.57692 -15.12922 -14.73451 -14.48132 -14.12849 -13.97743 -13.80998 -13.56784 -13.09163 -12.90323 -12.88080 -12.74424 -12.42271 -12.20365 -12.10560 -12.02421 -11.94360 -11.59379 -11.37206 -11.17592 -11.02274 -10.69332 -9.91938 -9.66343 -9.44350 -8.16925 -6.36470 0.48381 0.53798 1.38173 1.39976 1.50115 2.38923 2.83111 3.09738 3.46970 3.56836 3.81009 3.98459 4.08908 4.14924 4.21691 4.28774 4.35286 4.41474 4.54265 4.60344 4.70922 4.73329 4.83027 4.89088 4.95970 5.00941 5.04456 5.06780 5.14477 5.15585 5.30908 5.38074 5.49537 5.54183 5.63003 5.68769 5.74017 5.89237 6.16208 6.18288 6.61332 6.98557 7.38114 8.90974 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.006947 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.425561 B = 4029.513261 C = 4135.008921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.043 4.043 3 H 0.101 0.899 4 C -0.129 4.129 5 C 0.121 3.879 6 C -0.135 4.135 7 C -0.139 4.139 8 C 0.203 3.797 9 H -0.003 1.003 10 C -0.552 4.552 11 H 0.063 0.937 12 C 0.025 3.975 13 N -0.897 5.897 14 Si 0.959 3.041 15 H -0.279 1.279 16 H -0.278 1.278 17 H -0.261 1.261 18 O -0.367 6.367 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.096 4.096 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 7.177 8.416 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 H 0.120 0.880 4 C -0.167 4.167 5 C 0.081 3.919 6 C -0.173 4.173 7 C -0.177 4.177 8 C 0.147 3.853 9 H 0.015 0.985 10 C -0.589 4.589 11 H 0.081 0.919 12 C -0.178 4.178 13 N -0.535 5.535 14 Si 0.783 3.217 15 H -0.205 1.205 16 H -0.204 1.204 17 H -0.185 1.185 18 O -0.287 6.287 19 C -0.102 4.102 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.096 4.096 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.956 7.264 8.504 14.328 hybrid contribution -0.801 -0.942 -0.546 1.352 sum 8.155 6.323 7.958 13.031 Atomic orbital electron populations 1.21643 0.94432 1.00927 1.01619 1.20600 0.95537 0.99098 0.90916 0.88042 1.22801 1.01500 0.94908 0.97454 1.21087 0.87873 0.92251 0.90734 1.22943 0.97203 0.97133 1.00005 1.23117 0.96723 0.97580 1.00310 1.20565 0.91088 0.89905 0.83721 0.98545 1.21412 0.92664 0.92487 1.52338 0.91927 1.25922 0.99605 0.98942 0.93304 1.70158 1.11087 1.24066 1.48138 0.85565 0.78263 0.79758 0.78090 1.20475 1.20358 1.18470 1.89172 1.36257 1.58704 1.44573 1.20569 0.99273 0.95387 0.94988 1.20813 0.99994 0.98795 0.93545 1.21320 1.00753 0.97555 0.94912 1.21399 0.98281 0.93446 1.00392 1.20899 1.00387 1.01154 0.91008 1.20863 0.97924 0.95458 0.95351 0.91498 0.92337 0.95399 0.88945 0.92353 0.89754 0.90216 0.90658 0.92328 0.92986 0.86975 0.83453 0.82630 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.15 71.98 0.66 -3.96 16 2 C -0.04 -1.42 3.47 -10.80 -0.04 -1.46 16 3 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 4 C -0.13 -4.75 5.75 31.34 0.18 -4.57 16 5 C 0.12 5.03 0.99 -11.12 -0.01 5.02 16 6 C -0.14 -4.96 6.23 31.43 0.20 -4.77 16 7 C -0.14 -5.95 6.56 31.97 0.21 -5.74 16 8 C 0.20 10.89 3.09 30.55 0.09 10.98 16 9 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 10 C -0.55 -32.10 8.81 25.60 0.23 -31.87 16 11 H 0.06 3.52 7.76 -2.91 -0.02 3.50 16 12 C 0.02 1.43 5.44 84.66 0.46 1.89 16 13 N -0.90 -54.90 13.12 21.45 0.28 -54.62 16 14 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 18 O -0.37 -19.79 9.94 -148.98 -1.48 -21.28 16 19 C -0.10 -3.86 5.26 -19.74 -0.10 -3.97 16 20 C -0.11 -3.85 9.35 22.30 0.21 -3.64 16 21 C -0.13 -3.41 10.04 22.24 0.22 -3.19 16 22 C -0.12 -2.82 10.05 22.24 0.22 -2.60 16 23 C -0.12 -3.15 10.03 22.29 0.22 -2.92 16 24 C -0.10 -3.21 5.46 -19.54 -0.11 -3.32 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.03 1.26 7.71 -2.39 -0.02 1.24 16 28 H 0.09 2.82 7.56 -2.39 -0.02 2.80 16 29 H 0.06 2.45 7.86 -2.39 -0.02 2.44 16 30 H 0.08 2.70 7.39 -2.39 -0.02 2.68 16 31 H 0.08 2.63 7.12 -2.39 -0.02 2.61 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.11 3.77 7.94 -2.91 -0.02 3.75 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -69.01 308.19 4.50 -64.52 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.03 Total: 18.42 kcal Atomic # 6 Polarization: -56.75 SS G_CDS: 2.64 Total: -54.11 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.62 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.48 Total: -21.28 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.01 4.50 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383759913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.706 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds