Wall clock time and date at job start Mon Mar 30 2020 07:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00257 * 2 1 4 4 N 1.46504 * 109.47226 * 124.99962 * 3 2 1 5 5 C 1.39853 * 119.99785 * 90.00022 * 4 3 2 6 6 C 1.39603 * 119.83691 * 180.02562 * 5 4 3 7 7 C 1.38059 * 120.54827 * 180.02562 * 6 5 4 8 8 C 1.38744 * 120.21843 * 0.24933 * 7 6 5 9 9 N 1.38861 * 120.15771 * 179.74784 * 8 7 6 10 10 C 1.41557 * 119.67359 * 359.51888 * 8 7 6 11 11 C 1.41026 * 120.26524 * 180.20359 * 10 8 7 12 12 H 1.07999 * 120.00185 * 25.87240 * 11 10 8 13 13 C 1.39883 * 120.00019 * 205.86045 * 11 10 8 14 14 N 1.30907 * 120.00144 * 15.36730 * 13 11 10 15 15 Si 1.86804 * 120.00065 * 195.36979 * 13 11 10 16 16 H 1.48496 * 109.47136 * 89.99995 * 15 13 11 17 17 H 1.48503 * 109.47175 * 210.00176 * 15 13 11 18 18 H 1.48501 * 109.46913 * 329.99689 * 15 13 11 19 19 C 1.38009 * 119.83987 * 0.02562 * 5 4 3 20 20 C 1.46495 * 119.99818 * 270.00267 * 4 3 2 21 21 C 1.52997 * 117.50321 * 8.61884 * 20 4 3 22 22 C 1.52998 * 117.49659 * 299.99494 * 20 4 3 23 23 H 1.08000 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00287 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99680 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46980 * 4.99702 * 3 2 1 27 27 H 1.08996 * 109.47043 * 244.99988 * 3 2 1 28 28 H 1.08000 * 119.72832 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.89061 * 179.97438 * 7 6 5 30 30 H 0.96996 * 120.00584 * 354.78727 * 9 8 7 31 31 H 0.97005 * 119.99422 * 174.77921 * 9 8 7 32 32 H 0.97000 * 120.00244 * 184.96693 * 14 13 11 33 33 H 1.07999 * 120.11694 * 0.02681 * 19 5 4 34 34 H 1.08999 * 115.54482 * 154.33260 * 20 4 3 35 35 H 1.09004 * 117.49704 * 0.02562 * 21 20 4 36 36 H 1.09004 * 117.49972 * 145.02078 * 21 20 4 37 37 H 1.09007 * 117.49720 * 214.97901 * 22 20 4 38 38 H 1.09000 * 117.50332 * 0.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.2970 0.8485 0.9768 6 6 5.1806 0.8751 2.0573 7 6 6.4705 0.4023 1.9209 8 6 6.9045 -0.1010 0.7029 9 7 8.2038 -0.5714 0.5657 10 6 6.0149 -0.1370 -0.3976 11 6 6.4416 -0.6499 -1.6400 12 1 7.2430 -1.3729 -1.6793 13 6 5.8269 -0.2224 -2.8215 14 7 5.0798 0.8526 -2.8188 15 14 6.0718 -1.1856 -4.4033 16 1 5.0144 -2.2214 -4.5209 17 1 5.9909 -0.2616 -5.5630 18 1 7.4051 -1.8392 -4.3833 19 6 4.7033 0.3475 -0.2433 20 6 2.5589 1.8648 2.4248 21 6 1.0732 2.1899 2.5915 22 6 2.0949 3.3221 2.4683 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 4.8523 1.2689 3.0079 29 1 7.1452 0.4283 2.7637 30 1 8.8328 -0.4797 1.2983 31 1 8.4823 -0.9919 -0.2630 32 1 4.5958 1.1088 -3.6194 33 1 4.0172 0.3289 -1.0771 34 1 3.0909 1.4798 3.2948 35 1 0.4192 2.0068 1.7389 36 1 0.6273 2.0186 3.5713 37 1 2.3212 3.8957 3.3672 38 1 2.1128 3.8842 1.5346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384591246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:51 Heat of formation + Delta-G solvation = 82.441705 kcal Electronic energy + Delta-G solvation = -19197.216250 eV Core-core repulsion = 16426.885182 eV Total energy + Delta-G solvation = -2770.331068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -38.72534 -37.11571 -34.50637 -33.57828 -33.25506 -30.86303 -29.43478 -26.65411 -25.97887 -24.16225 -22.06156 -21.43151 -20.59420 -19.88285 -18.68702 -17.35980 -16.04667 -15.99087 -15.29111 -14.96884 -14.67826 -14.26304 -13.93675 -13.33486 -12.83752 -12.73100 -12.34947 -12.04082 -11.86012 -11.40101 -11.36747 -11.27372 -11.05694 -10.98447 -10.80432 -10.47422 -10.34709 -10.15619 -9.78151 -9.42666 -9.34721 -9.07652 -8.91058 -7.56692 -7.23610 -6.61757 -5.52792 -4.07155 2.60540 2.89934 3.14068 3.16123 3.30051 3.41676 4.03382 4.04055 4.26643 4.80260 5.20062 5.24671 5.32435 5.41319 5.42372 5.51286 5.79584 5.86581 5.92214 6.07856 6.18465 6.26549 6.37711 6.39623 6.47179 6.64276 6.95957 6.99032 7.13340 7.21130 7.32204 7.36493 7.71721 7.87948 7.89179 8.12688 8.45191 8.55760 8.82062 8.92136 8.98936 9.24391 9.32233 10.36952 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.007646 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.598599 B = 3661.228817 C = 4833.407835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C 0.151 3.849 4 N -0.603 5.603 5 C 0.175 3.825 6 C -0.248 4.248 7 C -0.153 4.153 8 C 0.087 3.913 9 N -0.889 5.889 10 C 0.093 3.907 11 C -0.461 4.461 12 H 0.070 0.930 13 C 0.078 3.922 14 N -0.802 5.802 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.198 4.198 20 C 0.118 3.882 21 C -0.201 4.201 22 C -0.211 4.211 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.374 0.626 31 H 0.388 0.612 32 H 0.275 0.725 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 0.838 4.763 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.161 4.161 3 C 0.027 3.973 4 N -0.315 5.315 5 C 0.079 3.921 6 C -0.272 4.272 7 C -0.177 4.177 8 C -0.014 4.014 9 N -0.431 5.431 10 C 0.088 3.912 11 C -0.492 4.492 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.430 5.430 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.222 4.222 20 C 0.011 3.989 21 C -0.239 4.239 22 C -0.250 4.250 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.127 0.873 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.199 0.801 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.825 1.087 4.560 7.477 hybrid contribution 0.297 -0.440 -0.768 0.934 sum -5.528 0.647 3.792 6.735 Atomic orbital electron populations 1.23631 0.95807 1.00956 1.04594 1.23662 0.95897 1.00438 0.96152 1.20367 0.91924 0.93369 0.91616 1.45562 1.09869 1.68527 1.07564 1.17500 0.82551 0.97425 0.94593 1.19660 0.94759 1.16020 0.96738 1.19719 0.95787 1.07370 0.94832 1.17889 0.85629 1.03309 0.94584 1.41808 1.10605 1.71979 1.18741 1.17005 0.90174 0.93106 0.90963 1.19126 1.17533 1.22255 0.90313 0.91198 1.25700 0.94399 0.93434 1.00228 1.69864 1.24098 1.18869 1.30133 0.86466 0.79666 0.80199 0.81237 1.19642 1.20623 1.18961 1.20694 0.96749 1.09886 0.94866 1.21248 0.94459 0.94298 0.88933 1.23349 0.93332 1.04442 1.02779 1.23424 1.05347 0.93492 1.02779 0.89234 0.89098 0.87263 0.92075 0.88652 0.89504 0.89695 0.80083 0.78358 0.91452 0.85553 0.86413 0.88617 0.89031 0.89148 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.97 13.61 29.01 0.39 -2.58 16 2 C -0.14 -2.38 9.76 -36.03 -0.35 -2.74 16 3 C 0.15 2.73 4.91 -5.19 -0.03 2.70 16 4 N -0.60 -11.83 2.93 -165.56 -0.49 -12.31 16 5 C 0.18 4.07 6.55 -83.77 -0.55 3.52 16 6 C -0.25 -5.62 9.28 -39.14 -0.36 -5.99 16 7 C -0.15 -3.49 9.87 -39.46 -0.39 -3.88 16 8 C 0.09 2.09 6.79 -83.23 -0.56 1.53 16 9 N -0.89 -18.12 8.97 32.75 0.29 -17.83 16 10 C 0.09 2.43 5.58 -106.66 -0.60 1.84 16 11 C -0.46 -11.98 8.53 -37.91 -0.32 -12.30 16 12 H 0.07 1.74 6.63 -52.49 -0.35 1.39 16 13 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 14 N -0.80 -20.63 10.88 55.54 0.60 -20.03 16 15 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 C -0.20 -5.05 7.82 -38.75 -0.30 -5.35 16 20 C 0.12 1.95 5.97 -67.94 -0.41 1.55 16 21 C -0.20 -2.75 9.72 -26.73 -0.26 -3.01 16 22 C -0.21 -3.04 10.13 -26.73 -0.27 -3.31 16 23 H 0.09 1.13 7.49 -52.49 -0.39 0.74 16 24 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 25 H 0.11 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.06 0.98 5.98 -51.93 -0.31 0.67 16 27 H 0.10 1.97 6.18 -51.93 -0.32 1.65 16 28 H 0.09 1.78 6.09 -52.49 -0.32 1.46 16 29 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.37 6.47 8.84 -40.82 -0.36 6.10 16 31 H 0.39 7.77 7.04 -40.82 -0.29 7.48 16 32 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 33 H 0.13 3.29 4.19 -52.49 -0.22 3.07 16 34 H 0.12 1.94 6.40 -51.93 -0.33 1.61 16 35 H 0.10 1.31 5.28 -51.93 -0.27 1.04 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -27.36 308.38 -8.90 -36.27 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -4.84 Total: 21.58 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -4.10 Total: -26.15 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.41 Total: -50.17 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.36 -8.90 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384591246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.708 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds