Wall clock time and date at job start Mon Mar 30 2020 07:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00257 * 2 1 4 4 N 1.46504 * 109.47226 * 124.99962 * 3 2 1 5 5 C 1.39853 * 119.99785 * 90.00022 * 4 3 2 6 6 C 1.39603 * 119.83691 * 180.02562 * 5 4 3 7 7 C 1.38059 * 120.54827 * 180.02562 * 6 5 4 8 8 C 1.38744 * 120.21843 * 0.24933 * 7 6 5 9 9 N 1.38861 * 120.15771 * 179.74784 * 8 7 6 10 10 C 1.41557 * 119.67359 * 359.51888 * 8 7 6 11 11 C 1.41026 * 120.26524 * 180.20359 * 10 8 7 12 12 H 1.07999 * 120.00185 * 25.87240 * 11 10 8 13 13 C 1.39883 * 120.00019 * 205.86045 * 11 10 8 14 14 N 1.30907 * 120.00144 * 15.36730 * 13 11 10 15 15 Si 1.86804 * 120.00065 * 195.36979 * 13 11 10 16 16 H 1.48496 * 109.47136 * 89.99995 * 15 13 11 17 17 H 1.48503 * 109.47175 * 210.00176 * 15 13 11 18 18 H 1.48501 * 109.46913 * 329.99689 * 15 13 11 19 19 C 1.38009 * 119.83987 * 0.02562 * 5 4 3 20 20 C 1.46495 * 119.99818 * 270.00267 * 4 3 2 21 21 C 1.52997 * 117.50321 * 8.61884 * 20 4 3 22 22 C 1.52998 * 117.49659 * 299.99494 * 20 4 3 23 23 H 1.08000 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00287 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99680 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46980 * 4.99702 * 3 2 1 27 27 H 1.08996 * 109.47043 * 244.99988 * 3 2 1 28 28 H 1.08000 * 119.72832 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.89061 * 179.97438 * 7 6 5 30 30 H 0.96996 * 120.00584 * 354.78727 * 9 8 7 31 31 H 0.97005 * 119.99422 * 174.77921 * 9 8 7 32 32 H 0.97000 * 120.00244 * 184.96693 * 14 13 11 33 33 H 1.07999 * 120.11694 * 0.02681 * 19 5 4 34 34 H 1.08999 * 115.54482 * 154.33260 * 20 4 3 35 35 H 1.09004 * 117.49704 * 0.02562 * 21 20 4 36 36 H 1.09004 * 117.49972 * 145.02078 * 21 20 4 37 37 H 1.09007 * 117.49720 * 214.97901 * 22 20 4 38 38 H 1.09000 * 117.50332 * 0.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.2970 0.8485 0.9768 6 6 5.1806 0.8751 2.0573 7 6 6.4705 0.4023 1.9209 8 6 6.9045 -0.1010 0.7029 9 7 8.2038 -0.5714 0.5657 10 6 6.0149 -0.1370 -0.3976 11 6 6.4416 -0.6499 -1.6400 12 1 7.2430 -1.3729 -1.6793 13 6 5.8269 -0.2224 -2.8215 14 7 5.0798 0.8526 -2.8188 15 14 6.0718 -1.1856 -4.4033 16 1 5.0144 -2.2214 -4.5209 17 1 5.9909 -0.2616 -5.5630 18 1 7.4051 -1.8392 -4.3833 19 6 4.7033 0.3475 -0.2433 20 6 2.5589 1.8648 2.4248 21 6 1.0732 2.1899 2.5915 22 6 2.0949 3.3221 2.4683 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 4.8523 1.2689 3.0079 29 1 7.1452 0.4283 2.7637 30 1 8.8328 -0.4797 1.2983 31 1 8.4823 -0.9919 -0.2630 32 1 4.5958 1.1088 -3.6194 33 1 4.0172 0.3289 -1.0771 34 1 3.0909 1.4798 3.2948 35 1 0.4192 2.0068 1.7389 36 1 0.6273 2.0186 3.5713 37 1 2.3212 3.8957 3.3672 38 1 2.1128 3.8842 1.5346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384591246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:49 Heat of formation + Delta-G solvation = 67.977741 kcal Electronic energy + Delta-G solvation = -19197.843455 eV Core-core repulsion = 16426.885182 eV Total energy + Delta-G solvation = -2770.958273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26592 -38.69906 -35.85133 -35.40249 -34.81845 -32.38555 -31.29505 -28.29081 -27.65331 -25.82688 -23.18857 -23.03701 -22.25338 -21.29329 -20.23396 -19.01418 -17.78663 -17.55703 -16.92091 -16.45534 -16.38678 -15.69379 -15.31755 -14.63867 -14.49712 -14.34534 -14.04886 -13.62922 -13.53988 -13.03825 -12.90369 -12.70090 -12.63273 -12.53145 -12.15433 -12.04859 -11.83907 -11.70558 -11.21930 -11.08535 -10.95752 -10.90665 -10.25464 -9.19845 -9.06429 -8.47533 -7.23121 -5.98379 1.12281 1.35396 1.40978 1.51369 1.52115 1.63955 2.27916 2.61538 2.90750 3.11200 3.77218 3.95451 3.98504 4.04204 4.11347 4.15993 4.29970 4.52274 4.65639 4.79266 4.81177 4.87406 4.96542 5.06393 5.16497 5.26228 5.30039 5.37862 5.48501 5.58849 5.72603 5.83948 5.93838 6.09515 6.14961 6.32424 6.59208 6.88887 7.05438 7.10239 7.18525 7.47567 7.67241 8.52446 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.007646 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.598599 B = 3661.228817 C = 4833.407835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.174 4.174 3 C 0.158 3.842 4 N -0.606 5.606 5 C 0.170 3.830 6 C -0.253 4.253 7 C -0.159 4.159 8 C 0.070 3.930 9 N -0.879 5.879 10 C 0.056 3.944 11 C -0.489 4.489 12 H 0.072 0.928 13 C 0.036 3.964 14 N -0.833 5.833 15 Si 0.969 3.031 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.259 1.259 19 C -0.220 4.220 20 C 0.081 3.919 21 C -0.175 4.175 22 C -0.202 4.202 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.390 0.610 31 H 0.389 0.611 32 H 0.278 0.722 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 1.110 5.775 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.034 3.966 4 N -0.318 5.318 5 C 0.072 3.928 6 C -0.277 4.277 7 C -0.183 4.183 8 C -0.032 4.032 9 N -0.423 5.423 10 C 0.051 3.949 11 C -0.520 4.520 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.461 5.461 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.183 1.183 19 C -0.244 4.244 20 C -0.024 4.024 21 C -0.212 4.212 22 C -0.241 4.241 23 H 0.131 0.869 24 H 0.127 0.873 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.218 0.782 31 H 0.217 0.783 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.239 1.370 5.605 9.257 hybrid contribution 0.631 -0.469 -0.966 1.245 sum -6.607 0.901 4.639 8.123 Atomic orbital electron populations 1.23892 0.94504 1.02862 0.99804 1.23343 0.96861 0.98613 1.00607 1.20280 0.91621 0.94914 0.89747 1.45678 1.08817 1.68191 1.09146 1.17645 0.84436 0.96728 0.93997 1.19995 0.94721 1.15502 0.97441 1.20060 0.96407 1.06633 0.95190 1.18069 0.86736 1.03804 0.94616 1.41677 1.09758 1.71470 1.19417 1.17414 0.91136 0.94277 0.92097 1.19358 1.18512 1.23065 0.91105 0.91032 1.26482 0.93961 0.94084 1.03149 1.69948 1.24957 1.20079 1.31115 0.85397 0.79671 0.78652 0.77125 1.19439 1.20100 1.18272 1.20708 0.96749 1.11367 0.95589 1.21488 0.97231 0.96252 0.87440 1.23413 0.91445 1.02186 1.04190 1.23439 1.04929 0.92499 1.03225 0.86942 0.87281 0.90063 0.89884 0.92387 0.87271 0.87114 0.78234 0.78268 0.91137 0.87041 0.86456 0.88464 0.86432 0.87050 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 13.61 67.78 0.92 -3.50 16 2 C -0.17 -5.88 9.76 25.65 0.25 -5.63 16 3 C 0.16 5.80 4.91 85.63 0.42 6.22 16 4 N -0.61 -23.97 2.93 -677.70 -1.99 -25.96 16 5 C 0.17 8.11 6.55 38.14 0.25 8.36 16 6 C -0.25 -11.44 9.28 22.56 0.21 -11.23 16 7 C -0.16 -7.20 9.87 22.35 0.22 -6.98 16 8 C 0.07 3.41 6.79 38.97 0.26 3.68 16 9 N -0.88 -35.94 8.97 -50.31 -0.45 -36.39 16 10 C 0.06 3.06 5.58 -21.18 -0.12 2.94 16 11 C -0.49 -26.39 8.53 23.35 0.20 -26.19 16 12 H 0.07 3.67 6.63 -2.91 -0.02 3.65 16 13 C 0.04 1.83 5.18 85.23 0.44 2.27 16 14 N -0.83 -44.73 10.88 21.82 0.24 -44.49 16 15 Si 0.97 39.64 29.59 68.60 2.03 41.67 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 C -0.22 -11.78 7.82 22.81 0.18 -11.60 16 20 C 0.08 2.58 5.97 44.99 0.27 2.85 16 21 C -0.17 -4.19 9.72 30.59 0.30 -3.90 16 22 C -0.20 -5.30 10.13 30.59 0.31 -4.99 16 23 H 0.11 2.39 7.49 -2.91 -0.02 2.37 16 24 H 0.11 2.43 8.06 -2.91 -0.02 2.40 16 25 H 0.08 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.08 2.60 5.98 -2.39 -0.01 2.58 16 27 H 0.06 2.55 6.18 -2.39 -0.01 2.54 16 28 H 0.11 4.34 6.09 -2.91 -0.02 4.32 16 29 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.39 13.18 8.84 -92.71 -0.82 12.36 16 31 H 0.39 15.76 7.04 -92.70 -0.65 15.11 16 32 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 33 H 0.11 6.21 4.19 -2.91 -0.01 6.20 16 34 H 0.12 3.67 6.40 -2.39 -0.02 3.65 16 35 H 0.10 2.32 5.28 -2.39 -0.01 2.31 16 36 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 Total: -1.00 -61.40 308.38 3.56 -57.83 By element: Atomic # 1 Polarization: 55.42 SS G_CDS: -0.38 Total: 55.04 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.11 Total: -47.70 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -2.20 Total: -106.84 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -61.40 3.56 -57.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384591246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.809 kcal (2) G-P(sol) polarization free energy of solvation -61.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds