Wall clock time and date at job start Mon Mar 30 2020 07:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47095 * 257.36811 * 3 2 1 5 5 C 1.46507 * 119.99745 * 270.00287 * 4 3 2 6 6 C 1.52999 * 109.47150 * 269.99551 * 5 4 3 7 7 C 1.52991 * 109.47131 * 179.97438 * 6 5 4 8 8 C 1.39853 * 119.99921 * 89.99926 * 4 3 2 9 9 C 1.39607 * 119.83833 * 180.24715 * 8 4 3 10 10 C 1.38058 * 120.54819 * 180.30523 * 9 8 4 11 11 C 1.38737 * 120.21774 * 359.44711 * 10 9 8 12 12 N 1.38870 * 120.16083 * 180.25352 * 11 10 9 13 13 C 1.41553 * 119.67737 * 0.28058 * 11 10 9 14 14 C 1.41024 * 120.26862 * 180.02562 * 13 11 10 15 15 H 1.07990 * 120.00247 * 330.39898 * 14 13 11 16 16 C 1.39892 * 119.99851 * 150.39595 * 14 13 11 17 17 N 1.30901 * 119.99990 * 162.40273 * 16 14 13 18 18 Si 1.86802 * 120.00006 * 342.40452 * 16 14 13 19 19 H 1.48497 * 109.46885 * 90.62805 * 18 16 14 20 20 H 1.48500 * 109.46739 * 210.62578 * 18 16 14 21 21 H 1.48494 * 109.47174 * 330.62621 * 18 16 14 22 22 C 1.38005 * 119.84155 * 0.02562 * 8 4 3 23 23 H 4.40641 * 5.51450 * 180.02562 * 4 1 2 24 24 H 1.08993 * 109.47217 * 137.37288 * 3 2 1 25 25 H 1.08994 * 109.47548 * 17.36463 * 3 2 1 26 26 H 1.08992 * 109.47126 * 29.99965 * 5 4 3 27 27 H 1.08999 * 109.46465 * 149.99884 * 5 4 3 28 28 H 1.09000 * 109.47327 * 300.00565 * 6 5 4 29 29 H 1.09002 * 109.46421 * 60.00230 * 6 5 4 30 30 H 1.09000 * 109.47493 * 300.00484 * 7 6 5 31 31 H 1.09008 * 109.47018 * 60.00414 * 7 6 5 32 32 H 1.09004 * 109.47510 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.72458 * 0.05649 * 9 8 4 34 34 H 1.07997 * 119.88514 * 179.72736 * 10 9 8 35 35 H 0.97003 * 119.99788 * 354.00230 * 12 11 10 36 36 H 0.96998 * 120.00214 * 174.00333 * 12 11 10 37 37 H 0.97000 * 120.00292 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.11058 * 359.97438 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3029 1.3478 5 6 3.3776 1.6922 1.7442 6 6 4.8225 2.0713 1.4131 7 6 5.0765 3.5222 1.8265 8 6 3.3677 -0.7346 2.2560 9 6 3.8280 -0.4424 3.5412 10 6 4.0693 -1.4556 4.4474 11 6 3.8452 -2.7779 4.0924 12 7 4.0834 -3.7958 5.0066 13 6 3.3732 -3.0846 2.7936 14 6 3.1406 -4.4243 2.4197 15 1 3.7228 -5.2178 2.8642 16 6 2.1557 -4.7253 1.4730 17 7 2.1602 -5.8876 0.8707 18 14 0.8341 -3.4687 1.0682 19 1 1.2890 -2.6182 -0.0609 20 1 -0.4167 -4.1718 0.6856 21 1 0.5794 -2.6174 2.2579 22 6 3.1377 -2.0421 1.8789 23 1 -1.0501 -0.0002 0.0000 24 1 3.0090 0.7569 -0.6959 25 1 3.0098 -0.9799 -0.3067 26 1 2.6966 2.3490 1.2033 27 1 3.2106 1.7986 2.8161 28 1 5.5036 1.4143 1.9541 29 1 4.9894 1.9647 0.3413 30 1 4.3954 4.1789 1.2853 31 1 4.9094 3.6292 2.8984 32 1 6.1058 3.7925 1.5902 33 1 4.0005 0.5846 3.8276 34 1 4.4295 -1.2176 5.4373 35 1 4.4887 -3.5924 5.8641 36 1 3.8445 -4.7100 4.7876 37 1 1.4775 -6.0962 0.2140 38 1 2.7778 -2.2640 0.8852 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384619603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:06 Heat of formation + Delta-G solvation = 79.722882 kcal Electronic energy + Delta-G solvation = -19218.156644 eV Core-core repulsion = 16447.707679 eV Total energy + Delta-G solvation = -2770.448965 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.69037 -36.64214 -33.82016 -33.40631 -32.99514 -31.30383 -30.27788 -27.40009 -27.32750 -24.68221 -23.74482 -21.46037 -21.20431 -19.40464 -17.81668 -17.30558 -16.63660 -15.84780 -15.22008 -14.85600 -14.65597 -14.36977 -14.08582 -13.61105 -13.16202 -12.89248 -12.42774 -12.18167 -12.03204 -11.94775 -11.67410 -11.38323 -11.27210 -11.08280 -10.72305 -10.59507 -10.49117 -10.07677 -9.92100 -9.78136 -9.68104 -9.43476 -8.89944 -7.87495 -7.50288 -6.78897 -5.81548 -4.19208 2.77232 2.94246 3.05480 3.17183 3.29549 3.38363 3.48760 4.09808 4.14495 4.66665 4.78381 5.13046 5.20468 5.29170 5.41902 5.58299 5.59514 5.64005 5.84221 5.87137 5.99480 6.07286 6.18314 6.27684 6.28547 6.39725 6.52045 6.76544 6.83654 7.05046 7.30623 7.42406 7.52919 7.70046 7.96217 7.97781 8.26181 8.32507 8.57089 8.60432 8.90686 9.08139 9.14767 10.23331 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.008959 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.967621 B = 3124.486851 C = 4352.792997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.183 4.183 3 C 0.231 3.769 4 N -0.633 5.633 5 C 0.134 3.866 6 C -0.144 4.144 7 C -0.148 4.148 8 C 0.197 3.803 9 C -0.252 4.252 10 C -0.143 4.143 11 C 0.099 3.901 12 N -0.886 5.886 13 C 0.080 3.920 14 C -0.450 4.450 15 H 0.087 0.913 16 C 0.083 3.917 17 N -0.822 5.822 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.302 1.302 21 H -0.251 1.251 22 C -0.274 4.274 23 H 0.211 0.789 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.376 0.624 36 H 0.393 0.607 37 H 0.281 0.719 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 12.163 -0.148 12.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.185 4.185 3 C 0.107 3.893 4 N -0.347 5.347 5 C 0.010 3.990 6 C -0.183 4.183 7 C -0.206 4.206 8 C 0.100 3.900 9 C -0.275 4.275 10 C -0.168 4.168 11 C -0.003 4.003 12 N -0.428 5.428 13 C 0.074 3.926 14 C -0.480 4.480 15 H 0.104 0.896 16 C -0.133 4.133 17 N -0.447 5.447 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.230 1.230 21 H -0.175 1.175 22 C -0.298 4.298 23 H 0.228 0.772 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.221 0.779 37 H 0.091 0.909 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.799 12.071 -0.446 12.106 hybrid contribution -0.867 0.130 -0.058 0.878 sum -0.067 12.201 -0.504 12.212 Atomic orbital electron populations 1.24810 0.95916 1.02611 1.00581 1.24183 0.95564 0.98903 0.99861 1.18207 0.82877 1.02622 0.85605 1.46221 1.73206 1.03923 1.11366 1.21244 0.94736 0.82452 1.00577 1.22006 0.98614 0.96211 1.01479 1.21700 1.01053 0.96521 1.01297 1.17348 0.97088 0.86713 0.88803 1.19662 1.17386 0.96983 0.93498 1.19793 1.07711 0.91199 0.98111 1.17763 1.05086 0.87574 0.89874 1.41865 1.73993 1.08706 1.18234 1.17162 0.93307 0.93159 0.88986 1.19096 1.17048 0.92355 1.19510 0.89560 1.26086 0.98664 0.95820 0.92757 1.69736 1.32029 1.22887 1.20093 0.86328 0.78448 0.79923 0.80987 1.19003 1.23019 1.17467 1.20401 1.18633 0.90833 0.99913 0.77202 0.89625 0.88393 0.92385 0.90941 0.91160 0.92340 0.93120 0.92772 0.92941 0.88811 0.89118 0.79821 0.77859 0.90909 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.73 18.87 29.55 0.56 -3.17 16 2 C -0.18 -3.35 12.01 -37.12 -0.45 -3.79 16 3 C 0.23 4.00 5.62 -6.83 -0.04 3.96 16 4 N -0.63 -11.67 2.57 -175.09 -0.45 -12.12 16 5 C 0.13 1.98 5.16 -4.04 -0.02 1.96 16 6 C -0.14 -1.86 6.26 -26.74 -0.17 -2.03 16 7 C -0.15 -1.53 9.91 37.15 0.37 -1.16 16 8 C 0.20 4.34 6.55 -83.77 -0.55 3.79 16 9 C -0.25 -5.33 9.21 -39.14 -0.36 -5.69 16 10 C -0.14 -3.09 9.87 -39.46 -0.39 -3.48 16 11 C 0.10 2.30 6.79 -83.23 -0.56 1.73 16 12 N -0.89 -17.68 8.97 32.75 0.29 -17.39 16 13 C 0.08 2.04 5.13 -106.66 -0.55 1.50 16 14 C -0.45 -12.24 8.89 -37.91 -0.34 -12.58 16 15 H 0.09 2.41 7.08 -52.49 -0.37 2.04 16 16 C 0.08 2.25 5.41 -17.33 -0.09 2.16 16 17 N -0.82 -22.55 13.93 55.55 0.77 -21.78 16 18 Si 0.92 22.30 23.58 -169.99 -4.01 18.29 16 19 H -0.26 -6.15 5.33 56.52 0.30 -5.85 16 20 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.25 -6.49 7.02 56.52 0.40 -6.10 16 22 C -0.27 -6.72 6.40 -38.75 -0.25 -6.97 16 23 H 0.21 2.76 7.80 -54.09 -0.42 2.34 16 24 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 25 H 0.10 1.84 6.14 -51.93 -0.32 1.52 16 26 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.77 6.10 -52.48 -0.32 1.44 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.38 6.25 8.84 -40.82 -0.36 5.89 16 36 H 0.39 7.94 7.18 -40.82 -0.29 7.65 16 37 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 38 H 0.11 2.61 2.56 -52.49 -0.13 2.48 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -29.64 309.66 -6.72 -36.36 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.16 Total: 15.73 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.84 Total: -23.76 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.62 Total: -51.29 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.01 Total: 18.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.64 -6.72 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384619603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.082 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds