Wall clock time and date at job start Mon Mar 30 2020 07:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47095 * 257.36811 * 3 2 1 5 5 C 1.46507 * 119.99745 * 270.00287 * 4 3 2 6 6 C 1.52999 * 109.47150 * 269.99551 * 5 4 3 7 7 C 1.52991 * 109.47131 * 179.97438 * 6 5 4 8 8 C 1.39853 * 119.99921 * 89.99926 * 4 3 2 9 9 C 1.39607 * 119.83833 * 180.24715 * 8 4 3 10 10 C 1.38058 * 120.54819 * 180.30523 * 9 8 4 11 11 C 1.38737 * 120.21774 * 359.44711 * 10 9 8 12 12 N 1.38870 * 120.16083 * 180.25352 * 11 10 9 13 13 C 1.41553 * 119.67737 * 0.28058 * 11 10 9 14 14 C 1.41024 * 120.26862 * 180.02562 * 13 11 10 15 15 H 1.07990 * 120.00247 * 330.39898 * 14 13 11 16 16 C 1.39892 * 119.99851 * 150.39595 * 14 13 11 17 17 N 1.30901 * 119.99990 * 162.40273 * 16 14 13 18 18 Si 1.86802 * 120.00006 * 342.40452 * 16 14 13 19 19 H 1.48497 * 109.46885 * 90.62805 * 18 16 14 20 20 H 1.48500 * 109.46739 * 210.62578 * 18 16 14 21 21 H 1.48494 * 109.47174 * 330.62621 * 18 16 14 22 22 C 1.38005 * 119.84155 * 0.02562 * 8 4 3 23 23 H 4.40641 * 5.51450 * 180.02562 * 4 1 2 24 24 H 1.08993 * 109.47217 * 137.37288 * 3 2 1 25 25 H 1.08994 * 109.47548 * 17.36463 * 3 2 1 26 26 H 1.08992 * 109.47126 * 29.99965 * 5 4 3 27 27 H 1.08999 * 109.46465 * 149.99884 * 5 4 3 28 28 H 1.09000 * 109.47327 * 300.00565 * 6 5 4 29 29 H 1.09002 * 109.46421 * 60.00230 * 6 5 4 30 30 H 1.09000 * 109.47493 * 300.00484 * 7 6 5 31 31 H 1.09008 * 109.47018 * 60.00414 * 7 6 5 32 32 H 1.09004 * 109.47510 * 180.02562 * 7 6 5 33 33 H 1.08003 * 119.72458 * 0.05649 * 9 8 4 34 34 H 1.07997 * 119.88514 * 179.72736 * 10 9 8 35 35 H 0.97003 * 119.99788 * 354.00230 * 12 11 10 36 36 H 0.96998 * 120.00214 * 174.00333 * 12 11 10 37 37 H 0.97000 * 120.00292 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.11058 * 359.97438 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3029 1.3478 5 6 3.3776 1.6922 1.7442 6 6 4.8225 2.0713 1.4131 7 6 5.0765 3.5222 1.8265 8 6 3.3677 -0.7346 2.2560 9 6 3.8280 -0.4424 3.5412 10 6 4.0693 -1.4556 4.4474 11 6 3.8452 -2.7779 4.0924 12 7 4.0834 -3.7958 5.0066 13 6 3.3732 -3.0846 2.7936 14 6 3.1406 -4.4243 2.4197 15 1 3.7228 -5.2178 2.8642 16 6 2.1557 -4.7253 1.4730 17 7 2.1602 -5.8876 0.8707 18 14 0.8341 -3.4687 1.0682 19 1 1.2890 -2.6182 -0.0609 20 1 -0.4167 -4.1718 0.6856 21 1 0.5794 -2.6174 2.2579 22 6 3.1377 -2.0421 1.8789 23 1 -1.0501 -0.0002 0.0000 24 1 3.0090 0.7569 -0.6959 25 1 3.0098 -0.9799 -0.3067 26 1 2.6966 2.3490 1.2033 27 1 3.2106 1.7986 2.8161 28 1 5.5036 1.4143 1.9541 29 1 4.9894 1.9647 0.3413 30 1 4.3954 4.1789 1.2853 31 1 4.9094 3.6292 2.8984 32 1 6.1058 3.7925 1.5902 33 1 4.0005 0.5846 3.8276 34 1 4.4295 -1.2176 5.4373 35 1 4.4887 -3.5924 5.8641 36 1 3.8445 -4.7100 4.7876 37 1 1.4775 -6.0962 0.2140 38 1 2.7778 -2.2640 0.8852 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384619603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:05 Heat of formation + Delta-G solvation = 61.776730 kcal Electronic energy + Delta-G solvation = -19218.934848 eV Core-core repulsion = 16447.707679 eV Total energy + Delta-G solvation = -2771.227169 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.32534 -38.17566 -35.36821 -34.95426 -34.54025 -32.68553 -32.11920 -28.94015 -28.69109 -26.46214 -25.12498 -23.18497 -22.40487 -21.04156 -19.28070 -19.00558 -18.32264 -17.48634 -16.79759 -16.52810 -16.14438 -15.67521 -15.38683 -15.24005 -14.74879 -14.23820 -14.01273 -13.80903 -13.69580 -13.46251 -13.06386 -12.83594 -12.62815 -12.56931 -12.39738 -12.23062 -11.74668 -11.60114 -11.54412 -11.32796 -11.26882 -11.14475 -10.70819 -9.41414 -9.37539 -8.79166 -7.50633 -6.16378 0.91271 1.17502 1.29087 1.49347 1.50635 1.64044 1.86634 2.17141 2.71380 2.76206 3.51311 3.67771 3.73692 4.07795 4.19019 4.27320 4.43592 4.51076 4.57601 4.66068 4.69347 4.84311 4.95566 5.01497 5.06241 5.12102 5.22812 5.26911 5.39545 5.47363 5.50140 5.69677 5.79904 5.94697 6.18854 6.34218 6.59117 6.65998 6.79720 6.90645 6.97583 7.29555 7.57910 8.28613 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.008959 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.967621 B = 3124.486851 C = 4352.792997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.222 4.222 3 C 0.227 3.773 4 N -0.634 5.634 5 C 0.130 3.870 6 C -0.137 4.137 7 C -0.142 4.142 8 C 0.189 3.811 9 C -0.238 4.238 10 C -0.143 4.143 11 C 0.084 3.916 12 N -0.878 5.878 13 C 0.046 3.954 14 C -0.473 4.473 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.863 5.863 18 Si 0.967 3.033 19 H -0.253 1.253 20 H -0.296 1.296 21 H -0.273 1.273 22 C -0.281 4.281 23 H 0.242 0.758 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.394 0.606 36 H 0.390 0.610 37 H 0.286 0.714 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 15.515 0.282 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.224 4.224 3 C 0.103 3.897 4 N -0.347 5.347 5 C 0.008 3.992 6 C -0.176 4.176 7 C -0.200 4.200 8 C 0.090 3.910 9 C -0.262 4.262 10 C -0.168 4.168 11 C -0.019 4.019 12 N -0.421 5.421 13 C 0.041 3.959 14 C -0.504 4.504 15 H 0.081 0.919 16 C -0.164 4.164 17 N -0.491 5.491 18 Si 0.794 3.206 19 H -0.178 1.178 20 H -0.224 1.224 21 H -0.198 1.198 22 C -0.305 4.305 23 H 0.258 0.742 24 H 0.139 0.861 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.222 0.778 36 H 0.218 0.782 37 H 0.096 0.904 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.699 15.458 -0.012 15.474 hybrid contribution -0.746 -0.688 -0.089 1.019 sum -0.047 14.770 -0.101 14.770 Atomic orbital electron populations 1.25676 0.96935 1.01198 0.99135 1.24535 0.96333 1.00266 1.01250 1.18324 0.82908 1.02724 0.85736 1.46405 1.72627 1.04514 1.11169 1.21478 0.96366 0.80615 1.00736 1.21911 0.96685 0.97528 1.01451 1.21658 1.02006 0.94697 1.01658 1.17479 0.96654 0.86890 0.89969 1.20114 1.14772 0.98453 0.92828 1.20202 1.06560 0.90364 0.99632 1.17983 1.05104 0.89087 0.89690 1.41784 1.73738 1.08028 1.18556 1.17361 0.95141 0.92819 0.90592 1.19089 1.17883 0.92750 1.20693 0.91949 1.26589 0.99860 0.96999 0.92926 1.69767 1.33392 1.24194 1.21760 0.85543 0.76937 0.78080 0.80009 1.17839 1.22374 1.19847 1.20494 1.18516 0.91991 0.99489 0.74182 0.86087 0.90614 0.90462 0.91112 0.93156 0.92040 0.91827 0.92439 0.92056 0.85869 0.85921 0.77769 0.78223 0.90418 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.60 18.87 74.32 1.40 -5.19 16 2 C -0.22 -7.66 12.01 31.13 0.37 -7.29 16 3 C 0.23 7.47 5.62 84.57 0.48 7.94 16 4 N -0.63 -21.96 2.57 -707.85 -1.82 -23.78 16 5 C 0.13 3.42 5.16 86.38 0.45 3.87 16 6 C -0.14 -3.10 6.26 30.59 0.19 -2.91 16 7 C -0.14 -2.41 9.91 71.98 0.71 -1.69 16 8 C 0.19 8.03 6.55 38.14 0.25 8.28 16 9 C -0.24 -9.41 9.21 22.56 0.21 -9.20 16 10 C -0.14 -5.80 9.87 22.35 0.22 -5.58 16 11 C 0.08 3.87 6.79 38.96 0.26 4.14 16 12 N -0.88 -34.73 8.97 -50.31 -0.45 -35.18 16 13 C 0.05 2.42 5.13 -21.18 -0.11 2.32 16 14 C -0.47 -26.82 8.89 23.35 0.21 -26.61 16 15 H 0.06 3.70 7.08 -2.92 -0.02 3.68 16 16 C 0.05 2.70 5.41 85.23 0.46 3.16 16 17 N -0.86 -49.30 13.93 21.82 0.30 -48.99 16 18 Si 0.97 47.26 23.58 68.60 1.62 48.87 16 19 H -0.25 -11.70 5.33 99.48 0.53 -11.17 16 20 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.27 -14.19 7.02 99.48 0.70 -13.49 16 22 C -0.28 -13.81 6.40 22.81 0.15 -13.67 16 23 H 0.24 5.50 7.80 -4.41 -0.03 5.47 16 24 H 0.12 3.03 8.07 -2.39 -0.02 3.01 16 25 H 0.08 2.83 6.14 -2.39 -0.01 2.81 16 26 H 0.08 1.77 8.07 -2.39 -0.02 1.75 16 27 H 0.07 1.88 6.17 -2.39 -0.01 1.87 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 4.12 6.10 -2.91 -0.02 4.11 16 34 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.39 12.49 8.84 -92.71 -0.82 11.67 16 36 H 0.39 16.12 7.18 -92.71 -0.67 15.46 16 37 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 38 H 0.10 4.86 2.56 -2.91 -0.01 4.85 16 Total: -1.00 -65.24 309.66 4.31 -60.92 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.59 Total: 40.60 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 5.25 Total: -42.45 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -1.97 Total: -107.95 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.62 Total: 48.87 kcal Total: -65.24 4.31 -60.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384619603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.699 kcal (2) G-P(sol) polarization free energy of solvation -65.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds