Wall clock time and date at job start Mon Mar 30 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51436 * 121.10926 * 2 1 4 4 C 1.53298 * 108.24596 * 229.04720 * 3 2 1 5 5 N 1.46829 * 109.39641 * 306.20724 * 4 3 2 6 6 C 1.39858 * 110.99827 * 189.74972 * 5 4 3 7 7 C 1.39593 * 119.83746 * 359.97438 * 6 5 4 8 8 C 1.38067 * 120.54574 * 179.97438 * 7 6 5 9 9 C 1.38725 * 120.22180 * 0.04100 * 8 7 6 10 10 N 1.38869 * 120.16287 * 180.02562 * 9 8 7 11 11 C 1.41565 * 119.67807 * 359.97438 * 9 8 7 12 12 C 1.41021 * 120.27239 * 180.27029 * 11 9 8 13 13 H 1.07995 * 120.00059 * 333.36624 * 12 11 9 14 14 C 1.39882 * 120.00022 * 153.35746 * 12 11 9 15 15 N 1.30901 * 120.00008 * 344.05985 * 14 12 11 16 16 Si 1.86803 * 120.00158 * 164.04983 * 14 12 11 17 17 H 1.48510 * 109.46689 * 60.00552 * 16 14 12 18 18 H 1.48502 * 109.47371 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47207 * 300.01060 * 16 14 12 20 20 C 1.38011 * 119.83751 * 179.97438 * 6 5 4 21 21 C 1.46829 * 111.56801 * 65.38487 * 5 4 3 22 22 C 1.51435 * 121.11602 * 180.02562 * 2 1 3 23 23 H 1.08000 * 120.00522 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99526 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.71242 * 109.35914 * 3 2 1 26 26 H 1.09005 * 109.70825 * 348.73526 * 3 2 1 27 27 H 1.08997 * 109.48511 * 186.22898 * 4 3 2 28 28 H 1.08998 * 109.49506 * 66.18825 * 4 3 2 29 29 H 1.07997 * 119.72927 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.88620 * 180.02562 * 8 7 6 31 31 H 0.97006 * 119.99942 * 185.30593 * 10 9 8 32 32 H 0.96996 * 120.00255 * 5.30420 * 10 9 8 33 33 H 0.97005 * 119.99887 * 175.00907 * 15 14 12 34 34 H 1.08001 * 120.11504 * 0.02633 * 20 6 5 35 35 H 1.08996 * 109.48253 * 54.59211 * 21 5 4 36 36 H 1.08997 * 109.48396 * 174.63260 * 21 5 4 37 37 H 1.08995 * 109.71329 * 250.64408 * 22 2 1 38 38 H 1.09003 * 109.70645 * 11.26721 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0924 1.2966 0.0000 4 6 3.1574 1.2145 -1.0996 5 7 3.9611 0.0003 -0.9103 6 6 5.0758 0.0005 -1.7549 7 6 5.2897 1.0730 -2.6225 8 6 6.3856 1.0885 -3.4622 9 6 7.2877 0.0347 -3.4525 10 7 8.3898 0.0518 -4.2971 11 6 7.0798 -1.0579 -2.5766 12 6 7.9919 -2.1331 -2.5524 13 1 8.5764 -2.3653 -3.4303 14 6 8.1398 -2.8988 -1.3911 15 7 7.6856 -2.4495 -0.2486 16 14 8.9852 -4.5627 -1.4707 17 1 10.3748 -4.3887 -1.9650 18 1 9.0138 -5.1688 -0.1153 19 1 8.2389 -5.4534 -2.3953 20 6 5.9591 -1.0596 -1.7264 21 6 3.1575 -1.2138 -1.1000 22 6 2.0925 -1.2965 -0.0006 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5399 -0.9354 -0.0004 25 1 2.5736 1.4356 0.9681 26 1 1.4206 2.1313 -0.2005 27 1 3.8038 2.0904 -1.0457 28 1 2.6716 1.1805 -2.0747 29 1 4.5921 1.8973 -2.6371 30 1 6.5409 1.9239 -4.1289 31 1 8.9765 -0.7192 -4.3446 32 1 8.5730 0.8347 -4.8396 33 1 7.7227 -3.0099 0.5423 34 1 5.7901 -1.8877 -1.0541 35 1 2.6715 -1.1795 -2.0750 36 1 3.8041 -2.0897 -1.0465 37 1 2.5737 -1.4359 0.9674 38 1 1.4209 -2.1311 -0.2015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384669308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:14 Heat of formation + Delta-G solvation = 27.093504 kcal Electronic energy + Delta-G solvation = -19137.901177 eV Core-core repulsion = 16365.170030 eV Total energy + Delta-G solvation = -2772.731147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.77148 -38.87308 -36.09519 -35.36589 -33.43055 -32.36608 -31.19733 -29.65753 -27.56870 -26.47612 -24.61510 -23.15190 -22.44474 -21.21718 -19.40447 -18.74432 -17.77846 -17.33499 -16.79372 -16.43529 -15.87428 -15.60279 -15.48399 -14.85675 -14.54061 -14.37978 -14.04648 -13.88681 -13.62592 -13.43899 -13.07662 -12.88503 -12.68866 -12.54470 -12.26851 -12.08120 -11.97713 -11.57678 -11.44413 -11.23447 -11.00163 -10.89008 -9.95594 -9.47326 -9.19014 -8.50480 -7.65495 -6.03563 1.06908 1.33834 1.39579 1.40941 1.50615 1.56062 2.27241 2.83578 3.13917 3.67334 3.78791 3.85889 3.89124 4.23556 4.33319 4.40490 4.50812 4.55202 4.62086 4.75374 4.79470 4.88760 4.94291 5.06761 5.09296 5.17839 5.21370 5.30284 5.37146 5.59228 5.74958 5.80900 5.95514 5.99620 6.02960 6.19322 6.48483 6.58037 6.91054 6.99194 7.06596 7.35886 7.58173 8.50479 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.006529 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.139559 B = 4287.820025 C = 5380.603641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.135 4.135 3 C -0.078 4.078 4 C 0.060 3.940 5 N -0.495 5.495 6 C 0.063 3.937 7 C -0.233 4.233 8 C -0.173 4.173 9 C 0.094 3.906 10 N -0.875 5.875 11 C 0.043 3.957 12 C -0.493 4.493 13 H 0.075 0.925 14 C 0.035 3.965 15 N -0.834 5.834 16 Si 0.972 3.028 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.169 4.169 21 C 0.068 3.932 22 C -0.078 4.078 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.280 0.720 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 3.077 -0.715 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.136 4.136 3 C -0.115 4.115 4 C -0.067 4.067 5 N -0.212 5.212 6 C -0.034 4.034 7 C -0.255 4.255 8 C -0.198 4.198 9 C -0.009 4.009 10 N -0.418 5.418 11 C 0.037 3.963 12 C -0.524 4.524 13 H 0.093 0.907 14 C -0.178 4.178 15 N -0.461 5.461 16 Si 0.794 3.206 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.192 4.192 21 C -0.058 4.058 22 C -0.115 4.115 23 H 0.131 0.869 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.220 0.780 32 H 0.220 0.780 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.184 3.039 0.105 9.674 hybrid contribution 0.754 -0.748 -0.774 1.315 sum -8.430 2.290 -0.669 8.761 Atomic orbital electron populations 1.23759 0.94068 1.02952 1.01500 1.22032 0.95509 0.95513 1.00507 1.20917 0.96246 0.95597 0.98751 1.22194 0.94565 0.92391 0.97511 1.59044 1.07231 1.03441 1.51521 1.18692 0.93826 0.96650 0.94185 1.20624 1.02147 1.01026 1.01733 1.20172 0.96960 0.98836 1.03798 1.18158 0.90840 0.95044 0.96827 1.41753 1.29829 1.20981 1.49265 1.17471 0.93280 0.92563 0.92943 1.19330 1.21342 1.13433 0.98280 0.90721 1.26540 0.95316 1.02062 0.93900 1.69956 1.39300 1.36630 1.00263 0.85419 0.79320 0.77842 0.78057 1.18466 1.20061 1.18916 1.20603 0.95013 0.99067 1.04519 1.22090 0.94430 0.92042 0.97250 1.20876 0.96096 0.96077 0.98458 0.86867 0.87479 0.90873 0.88569 0.90503 0.94687 0.86478 0.86765 0.77991 0.77961 0.90959 0.88196 0.95324 0.92411 0.91124 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 14.01 67.79 0.95 -2.87 16 2 C -0.14 -3.50 5.42 -16.02 -0.09 -3.59 16 3 C -0.08 -2.05 6.21 30.18 0.19 -1.86 16 4 C 0.06 2.00 4.19 86.42 0.36 2.36 16 5 N -0.50 -20.30 4.62 -694.54 -3.21 -23.50 16 6 C 0.06 3.04 5.65 38.13 0.22 3.26 16 7 C -0.23 -10.38 8.83 22.56 0.20 -10.18 16 8 C -0.17 -7.71 9.87 22.35 0.22 -7.49 16 9 C 0.09 4.52 6.79 38.96 0.26 4.78 16 10 N -0.88 -34.76 8.97 -50.31 -0.45 -35.21 16 11 C 0.04 2.32 5.57 -21.18 -0.12 2.20 16 12 C -0.49 -26.37 8.51 23.35 0.20 -26.18 16 13 H 0.07 3.75 6.65 -2.91 -0.02 3.73 16 14 C 0.03 1.78 5.16 85.23 0.44 2.22 16 15 N -0.83 -45.57 10.97 21.82 0.24 -45.33 16 16 Si 0.97 39.37 29.59 68.60 2.03 41.40 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 C -0.17 -9.15 7.71 22.81 0.18 -8.98 16 21 C 0.07 2.54 5.33 86.41 0.46 3.00 16 22 C -0.08 -2.27 6.21 30.18 0.19 -2.09 16 23 H 0.11 1.91 7.95 -2.91 -0.02 1.89 16 24 H 0.11 1.93 7.95 -2.91 -0.02 1.91 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.10 1.98 7.93 -2.38 -0.02 1.96 16 27 H 0.08 2.55 6.69 -2.39 -0.02 2.54 16 28 H 0.03 1.15 7.90 -2.39 -0.02 1.13 16 29 H 0.12 4.54 5.76 -2.91 -0.02 4.52 16 30 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.39 15.36 7.05 -92.70 -0.65 14.70 16 32 H 0.39 12.75 8.84 -92.71 -0.82 11.93 16 33 H 0.28 14.16 8.30 -92.70 -0.77 13.39 16 34 H 0.10 5.76 5.28 -2.91 -0.02 5.75 16 35 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.06 2.42 6.54 -2.39 -0.02 2.41 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.09 2.19 7.93 -2.39 -0.02 2.17 16 Total: -1.00 -61.73 302.13 1.88 -59.85 By element: Atomic # 1 Polarization: 48.58 SS G_CDS: -0.39 Total: 48.19 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 3.66 Total: -45.41 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -3.42 Total: -104.04 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -61.73 1.88 -59.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384669308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.942 kcal (2) G-P(sol) polarization free energy of solvation -61.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds