Wall clock time and date at job start Mon Mar 30 2020 06:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 C 1.53009 * 109.47103 * 239.99902 * 2 1 3 5 5 C 1.52997 * 109.47154 * 300.00050 * 4 2 1 6 6 C 1.52998 * 109.46987 * 300.00135 * 5 4 2 7 7 C 1.52997 * 109.47529 * 60.00130 * 6 5 4 8 8 H 1.08992 * 109.47438 * 59.99921 * 7 6 5 9 9 S 1.81405 * 109.47367 * 180.02562 * 7 6 5 10 10 C 1.81399 * 102.99706 * 294.99750 * 9 7 6 11 11 C 1.53002 * 109.47162 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.47079 * 180.02562 * 11 10 9 13 13 C 1.42899 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46785 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00467 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99662 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99961 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99656 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47441 * 59.99718 * 18 16 14 20 20 H 1.48505 * 109.46794 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46958 * 299.99305 * 18 16 14 22 22 C 1.52998 * 109.47353 * 119.99991 * 2 1 3 23 23 H 1.09000 * 109.47222 * 299.99758 * 1 2 3 24 24 H 1.09000 * 109.47345 * 60.00078 * 1 2 3 25 25 H 1.09006 * 109.47395 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46791 * 60.00303 * 4 2 1 27 27 H 1.09001 * 109.46842 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.46883 * 59.99362 * 5 4 2 29 29 H 1.08995 * 109.47425 * 179.97438 * 5 4 2 30 30 H 1.09004 * 109.47134 * 299.99458 * 6 5 4 31 31 H 1.09008 * 109.47312 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47089 * 299.99939 * 10 9 7 33 33 H 1.09004 * 109.47568 * 59.99949 * 10 9 7 34 34 H 1.09000 * 109.46497 * 299.99702 * 11 10 9 35 35 H 1.08996 * 109.46876 * 60.00092 * 11 10 9 36 36 H 1.09005 * 109.47016 * 299.99485 * 13 12 11 37 37 H 1.08997 * 109.47442 * 59.99964 * 13 12 11 38 38 H 0.96999 * 119.99306 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47161 * 300.00288 * 22 2 1 40 40 H 1.09004 * 109.47439 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2493 9 16 2.1352 -3.0185 2.7304 10 6 1.3159 -4.6340 2.6327 11 6 1.7295 -5.4889 3.8323 12 8 1.0845 -6.7618 3.7550 13 6 1.4052 -7.6423 4.8338 14 6 0.6735 -8.9471 4.6516 15 1 0.0278 -9.0896 3.7977 16 6 0.8276 -9.9587 5.5758 17 7 1.6135 -9.7850 6.6159 18 14 -0.0788 -11.5764 5.3496 19 1 0.3315 -12.1983 4.0651 20 1 0.2544 -12.4914 6.4708 21 1 -1.5424 -11.3255 5.3330 22 6 2.0400 -0.7212 1.2492 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6766 -0.2074 -2.1393 27 1 3.1300 -0.7209 -1.2495 28 1 0.4400 -2.1637 -1.2492 29 1 1.8929 -2.6775 -2.1394 30 1 3.1300 -2.8850 -0.0001 31 1 1.6770 -3.9128 -0.0002 32 1 0.2349 -4.4943 2.6419 33 1 1.6096 -5.1352 1.7103 34 1 2.8104 -5.6286 3.8233 35 1 1.4354 -4.9876 4.7543 36 1 2.4795 -7.8263 4.8455 37 1 1.1044 -7.1861 5.7769 38 1 1.7215 -10.4966 7.2662 39 1 1.6766 -0.2074 2.1392 40 1 3.1300 -0.7216 1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385247616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:40 Heat of formation + Delta-G solvation = -86.561987 kcal Electronic energy + Delta-G solvation = -16907.043383 eV Core-core repulsion = 14232.534965 eV Total energy + Delta-G solvation = -2674.508418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.25583 -36.84530 -32.87271 -32.35658 -31.11360 -30.83997 -27.17938 -26.92994 -23.37117 -22.48374 -22.39696 -21.98085 -18.88890 -16.86811 -16.36991 -15.92121 -15.44444 -15.26446 -14.89426 -14.55558 -14.26558 -14.14610 -13.50789 -13.42094 -13.05604 -12.84764 -12.41551 -12.28489 -12.00321 -11.78918 -11.46959 -11.33363 -11.15758 -10.96434 -10.78596 -10.73277 -10.64654 -10.51533 -10.27273 -10.07261 -9.67080 -9.14951 -8.86989 -8.22126 -7.62401 -6.12441 -4.14885 1.62828 2.62531 3.31429 3.34047 3.37930 4.33028 4.34303 4.37259 4.58864 4.80260 4.88063 4.90746 5.02815 5.05931 5.16652 5.18621 5.23764 5.27294 5.39544 5.49546 5.55329 5.69457 5.69883 5.72194 5.77677 5.79869 5.89904 5.91966 6.00241 6.03922 6.16145 6.20009 6.21437 7.07099 7.39751 7.76419 8.11598 8.51379 8.97107 9.49799 10.99021 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.047216 B = 0.003105 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.876638 B = 9016.416034 C = 9279.821622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.050 4.050 8 H 0.089 0.911 9 S -0.262 6.262 10 C -0.079 4.079 11 C 0.080 3.920 12 O -0.395 6.395 13 C 0.197 3.803 14 C -0.518 4.518 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.910 3.090 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.093 4.093 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 19.891 -14.322 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.179 4.179 8 H 0.107 0.893 9 S -0.032 6.032 10 C -0.227 4.227 11 C 0.002 3.998 12 O -0.316 6.316 13 C 0.122 3.878 14 C -0.556 4.556 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.737 3.263 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.132 4.132 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.097 20.080 -13.463 24.201 hybrid contribution -1.061 -1.313 -0.612 1.796 sum 0.036 18.767 -14.075 23.458 Atomic orbital electron populations 1.21969 0.95222 1.02242 1.01639 1.21101 0.96050 0.99043 0.94446 0.90830 1.21588 1.00728 0.95625 0.97360 1.21598 1.01090 0.95587 0.97547 1.21891 1.01836 0.98896 0.92928 1.23189 1.02839 0.97531 0.94321 0.89293 1.86702 1.65861 1.15851 1.34827 1.23261 1.02699 0.93685 1.03032 1.21800 0.96660 0.86404 0.94973 1.87833 1.69726 1.23215 1.50780 1.20234 0.95649 0.87808 0.84079 1.21013 1.27865 0.97337 1.09415 0.91555 1.24959 0.95565 0.99115 0.94821 1.69956 1.37571 1.33910 1.12221 0.86370 0.80021 0.82196 0.77737 1.19977 1.21095 1.19974 1.21380 1.01264 0.92312 0.98247 0.92606 0.92742 0.92055 0.91953 0.91813 0.91616 0.91703 0.90697 0.91574 0.89666 0.89518 0.93582 0.93595 0.97497 0.97504 0.92514 0.91006 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.50 37.15 0.32 -0.77 16 2 C -0.09 -0.62 3.19 -90.62 -0.29 -0.91 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.81 5.45 -26.73 -0.15 -0.96 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.12 -1.13 5.11 -26.73 -0.14 -1.27 16 7 C -0.05 -0.52 2.38 -26.73 -0.06 -0.59 16 8 H 0.09 0.93 6.43 -51.93 -0.33 0.60 16 9 S -0.26 -3.63 21.15 -107.50 -2.27 -5.91 16 10 C -0.08 -1.25 6.01 37.16 0.22 -1.02 16 11 C 0.08 1.58 5.95 37.16 0.22 1.80 16 12 O -0.40 -9.81 10.33 -35.23 -0.36 -10.17 16 13 C 0.20 5.52 5.69 36.01 0.20 5.73 16 14 C -0.52 -15.46 9.43 -34.44 -0.32 -15.79 16 15 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.09 -0.83 4.74 -26.73 -0.13 -0.96 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.51 6.43 -51.93 -0.33 0.18 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.71 6.92 -51.92 -0.36 0.35 16 32 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.09 1.33 7.14 -51.92 -0.37 0.96 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -30.68 325.02 -9.51 -40.18 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -7.11 Total: -5.27 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.37 Total: -14.28 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.36 Total: -10.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.27 Total: -5.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.68 -9.51 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.378 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds