Wall clock time and date at job start Mon Mar 30 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47328 * 2 1 4 4 C 1.53009 * 109.47103 * 239.99902 * 2 1 3 5 5 C 1.52997 * 109.47154 * 300.00050 * 4 2 1 6 6 C 1.52998 * 109.46987 * 300.00135 * 5 4 2 7 7 C 1.52997 * 109.47529 * 60.00130 * 6 5 4 8 8 H 1.08992 * 109.47438 * 59.99921 * 7 6 5 9 9 S 1.81405 * 109.47367 * 180.02562 * 7 6 5 10 10 C 1.81399 * 102.99706 * 294.99750 * 9 7 6 11 11 C 1.53002 * 109.47162 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.47079 * 180.02562 * 11 10 9 13 13 C 1.42899 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46785 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00467 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99662 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99961 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99656 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47441 * 59.99718 * 18 16 14 20 20 H 1.48505 * 109.46794 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46958 * 299.99305 * 18 16 14 22 22 C 1.52998 * 109.47353 * 119.99991 * 2 1 3 23 23 H 1.09000 * 109.47222 * 299.99758 * 1 2 3 24 24 H 1.09000 * 109.47345 * 60.00078 * 1 2 3 25 25 H 1.09006 * 109.47395 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46791 * 60.00303 * 4 2 1 27 27 H 1.09001 * 109.46842 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.46883 * 59.99362 * 5 4 2 29 29 H 1.08995 * 109.47425 * 179.97438 * 5 4 2 30 30 H 1.09004 * 109.47134 * 299.99458 * 6 5 4 31 31 H 1.09008 * 109.47312 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47089 * 299.99939 * 10 9 7 33 33 H 1.09004 * 109.47568 * 59.99949 * 10 9 7 34 34 H 1.09000 * 109.46497 * 299.99702 * 11 10 9 35 35 H 1.08996 * 109.46876 * 60.00092 * 11 10 9 36 36 H 1.09005 * 109.47016 * 299.99485 * 13 12 11 37 37 H 1.08997 * 109.47442 * 59.99964 * 13 12 11 38 38 H 0.96999 * 119.99306 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47161 * 300.00288 * 22 2 1 40 40 H 1.09004 * 109.47439 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2493 9 16 2.1352 -3.0185 2.7304 10 6 1.3159 -4.6340 2.6327 11 6 1.7295 -5.4889 3.8323 12 8 1.0845 -6.7618 3.7550 13 6 1.4052 -7.6423 4.8338 14 6 0.6735 -8.9471 4.6516 15 1 0.0278 -9.0896 3.7977 16 6 0.8276 -9.9587 5.5758 17 7 1.6135 -9.7850 6.6159 18 14 -0.0788 -11.5764 5.3496 19 1 0.3315 -12.1983 4.0651 20 1 0.2544 -12.4914 6.4708 21 1 -1.5424 -11.3255 5.3330 22 6 2.0400 -0.7212 1.2492 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6766 -0.2074 -2.1393 27 1 3.1300 -0.7209 -1.2495 28 1 0.4400 -2.1637 -1.2492 29 1 1.8929 -2.6775 -2.1394 30 1 3.1300 -2.8850 -0.0001 31 1 1.6770 -3.9128 -0.0002 32 1 0.2349 -4.4943 2.6419 33 1 1.6096 -5.1352 1.7103 34 1 2.8104 -5.6286 3.8233 35 1 1.4354 -4.9876 4.7543 36 1 2.4795 -7.8263 4.8455 37 1 1.1044 -7.1861 5.7769 38 1 1.7215 -10.4966 7.2662 39 1 1.6766 -0.2074 2.1392 40 1 3.1300 -0.7216 1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385247616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:34 Heat of formation + Delta-G solvation = -102.877980 kcal Electronic energy + Delta-G solvation = -16907.750898 eV Core-core repulsion = 14232.534965 eV Total energy + Delta-G solvation = -2675.215933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -39.93428 -38.78560 -35.05774 -33.12694 -32.41208 -31.80796 -29.20683 -27.69017 -24.76389 -24.30215 -23.25326 -23.11772 -19.55190 -18.70297 -17.84188 -17.50949 -17.08800 -16.53832 -16.13118 -15.62076 -15.41656 -15.16841 -14.85906 -14.77781 -14.08556 -14.03982 -13.62945 -13.28327 -13.05953 -12.97050 -12.86502 -12.65725 -12.56014 -12.42436 -12.10642 -12.04276 -11.96722 -11.55709 -11.34012 -11.18700 -10.96078 -10.92192 -10.64502 -10.35963 -8.76299 -8.35427 -6.49325 0.49353 1.39195 1.44369 1.52293 1.53481 2.33200 2.98302 3.16956 3.61425 3.65275 3.80066 3.96766 4.03576 4.14209 4.20577 4.28843 4.34479 4.40623 4.42342 4.56763 4.61830 4.66085 4.78893 4.82962 4.86473 4.96848 5.07736 5.09207 5.09545 5.11418 5.22204 5.32359 5.38778 5.40808 5.49992 5.59158 5.88950 6.41954 6.72114 7.22395 8.76897 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.047216 B = 0.003105 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.876638 B = 9016.416034 C = 9279.821622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.087 0.913 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.038 4.038 8 H 0.092 0.908 9 S -0.282 6.282 10 C -0.069 4.069 11 C 0.076 3.924 12 O -0.407 6.407 13 C 0.209 3.791 14 C -0.554 4.554 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.091 4.091 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.045 0.955 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.272 0.728 39 H 0.069 0.931 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 20.323 -15.800 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.105 0.895 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.167 4.167 8 H 0.110 0.890 9 S -0.052 6.052 10 C -0.217 4.217 11 C -0.002 4.002 12 O -0.327 6.327 13 C 0.134 3.866 14 C -0.592 4.592 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.130 4.130 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.368 20.536 -14.949 25.403 hybrid contribution -0.779 -1.316 -0.163 1.538 sum -0.411 19.220 -15.111 24.453 Atomic orbital electron populations 1.21971 0.95003 1.01921 1.02199 1.21097 0.96158 0.99454 0.93425 0.89495 1.21592 1.00818 0.94931 0.97770 1.21589 1.01240 0.96087 0.96574 1.21874 1.01580 0.98477 0.93543 1.23320 1.02913 0.97951 0.92475 0.88991 1.86765 1.66003 1.14660 1.37811 1.23053 1.03073 0.94442 1.01153 1.22020 0.96436 0.84768 0.97007 1.87783 1.70409 1.24982 1.49533 1.19887 0.94241 0.88248 0.84209 1.21364 1.28957 0.98671 1.10187 0.91707 1.26023 0.96069 1.03180 0.93972 1.70069 1.38430 1.35495 1.12916 0.85178 0.78812 0.76760 0.78320 1.18860 1.19874 1.18858 1.21403 1.01125 0.91177 0.99302 0.92704 0.91604 0.92787 0.90500 0.91719 0.91344 0.90984 0.91104 0.92738 0.89318 0.89125 0.93617 0.93628 0.99394 0.99411 0.91876 0.91238 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.50 71.98 0.61 -1.23 16 2 C -0.08 -0.98 3.19 -10.79 -0.03 -1.02 16 3 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.31 5.45 30.60 0.17 -1.14 16 5 C -0.12 -1.60 5.65 30.59 0.17 -1.42 16 6 C -0.12 -2.13 5.11 30.59 0.16 -1.97 16 7 C -0.04 -0.76 2.38 30.60 0.07 -0.69 16 8 H 0.09 1.81 6.43 -2.39 -0.02 1.80 16 9 S -0.28 -7.76 21.15 -56.49 -1.19 -8.95 16 10 C -0.07 -2.21 6.01 71.98 0.43 -1.77 16 11 C 0.08 3.06 5.95 71.98 0.43 3.48 16 12 O -0.41 -20.74 10.33 -148.98 -1.54 -22.28 16 13 C 0.21 12.17 5.69 71.24 0.41 12.58 16 14 C -0.55 -33.64 9.43 25.60 0.24 -33.40 16 15 H 0.06 3.85 7.81 -2.91 -0.02 3.83 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 18 Si 0.99 44.55 29.54 68.60 2.03 46.58 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 C -0.09 -1.49 4.74 30.60 0.14 -1.34 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.73 4.81 -2.38 -0.01 0.71 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 31 H 0.05 1.13 6.92 -2.38 -0.02 1.11 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 2.80 7.14 -2.39 -0.02 2.78 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.73 325.02 3.82 -61.91 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.98 Total: 6.22 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.26 Total: -27.09 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.54 Total: -22.28 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.19 Total: -8.95 kcal Total: -65.73 3.82 -61.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385247616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.969 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds