Wall clock time and date at job start Mon Mar 30 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46977 * 239.99697 * 3 2 1 5 5 H 1.48493 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47099 * 119.99835 * 3 2 1 7 7 C 1.37874 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47070 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47070 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47350 * 179.97438 * 12 11 10 14 14 C 1.36746 * 125.07550 * 99.17946 * 13 12 11 15 15 C 1.34273 * 109.89976 * 179.85677 * 14 13 12 16 16 C 1.46476 * 107.01409 * 0.40035 * 15 14 13 17 17 C 1.39829 * 133.97717 * 179.76094 * 16 15 14 18 18 C 1.36599 * 119.90395 * 179.97438 * 17 16 15 19 19 C 1.38790 * 120.58778 * 0.02562 * 18 17 16 20 20 C 1.38374 * 120.57600 * 359.97438 * 19 18 17 21 21 N 1.39834 * 120.17329 * 180.02562 * 20 19 18 22 22 C 1.37837 * 125.08309 * 279.48856 * 13 12 11 23 23 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47078 * 59.99063 * 9 7 2 25 25 H 1.09003 * 109.46647 * 299.99326 * 9 7 2 26 26 H 1.09005 * 109.46955 * 59.99394 * 10 9 7 27 27 H 1.08993 * 109.46766 * 299.99830 * 10 9 7 28 28 H 1.09003 * 109.47004 * 300.00035 * 11 10 9 29 29 H 1.08995 * 109.47367 * 60.00171 * 11 10 9 30 30 H 1.09003 * 109.47236 * 299.99893 * 12 11 10 31 31 H 1.09005 * 109.47411 * 59.99990 * 12 11 10 32 32 H 1.07998 * 125.05662 * 0.02562 * 14 13 12 33 33 H 1.08000 * 126.49491 * 180.15929 * 15 14 13 34 34 H 1.07995 * 120.04871 * 359.97271 * 17 16 15 35 35 H 1.08000 * 119.70498 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.71384 * 179.97438 * 19 18 17 37 37 H 0.96997 * 120.00376 * 187.23645 * 21 20 19 38 38 H 0.97001 * 120.00019 * 7.24336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7421 -7.4187 0.0018 14 6 1.5026 -8.1890 -1.1025 15 6 0.8092 -9.2847 -0.7539 16 6 0.5785 -9.2044 0.6904 17 6 -0.0729 -10.0246 1.6167 18 6 -0.1166 -9.6639 2.9334 19 6 0.4805 -8.4871 3.3635 20 6 1.1310 -7.6590 2.4659 21 7 1.7301 -6.4756 2.9085 22 6 1.1861 -8.0115 1.1151 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8539 -5.0445 0.8914 29 1 0.8534 -5.0451 -0.8885 30 1 3.1006 -6.0923 -0.8899 31 1 3.1019 -6.0922 0.8901 32 1 1.8257 -7.9527 -2.1055 33 1 0.4802 -10.0736 -1.4139 34 1 -0.5409 -10.9420 1.2915 35 1 -0.6203 -10.3001 3.6462 36 1 0.4370 -8.2154 4.4078 37 1 2.0931 -5.8460 2.2661 38 1 1.7829 -6.2843 3.8580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385401465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:30 Heat of formation + Delta-G solvation = 41.347817 kcal Electronic energy + Delta-G solvation = -18423.040315 eV Core-core repulsion = 15650.927282 eV Total energy + Delta-G solvation = -2772.113033 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25592 -37.27073 -35.85199 -34.20424 -32.72964 -31.05939 -28.99966 -28.79142 -27.38625 -24.83350 -22.56611 -22.10475 -21.51075 -20.28966 -19.84183 -17.18853 -16.68282 -16.38938 -16.31661 -15.35728 -14.78116 -14.72412 -14.51453 -14.31659 -13.49543 -13.00745 -12.84915 -12.68854 -12.28870 -12.24210 -11.85159 -11.55005 -11.44402 -11.12093 -11.03694 -10.77282 -10.70729 -10.61622 -10.43639 -9.83226 -9.46039 -9.17305 -8.62231 -8.40864 -8.04769 -6.86331 -6.05357 -4.08921 1.44826 1.82703 2.87320 2.95053 3.28610 3.33689 3.35451 3.95267 4.13536 4.40367 4.71670 4.81151 4.93182 5.12947 5.15941 5.30131 5.34804 5.44968 5.60942 5.71054 5.79859 5.85530 5.96923 6.04024 6.12568 6.23284 6.44795 6.52317 6.70010 6.77418 6.92574 6.97870 6.98971 7.25138 7.42394 7.59466 7.64618 7.72099 7.83089 7.93342 8.34621 8.98010 9.55642 11.05757 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.003901 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.007220 B = 7176.296316 C = 7584.530772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.140 4.140 12 C 0.102 3.898 13 N -0.473 5.473 14 C 0.059 3.941 15 C -0.222 4.222 16 C -0.068 4.068 17 C -0.138 4.138 18 C -0.096 4.096 19 C -0.206 4.206 20 C 0.223 3.777 21 N -0.886 5.886 22 C 0.036 3.964 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.398 0.602 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -18.218 2.494 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.179 4.179 12 C -0.020 4.020 13 N -0.155 5.155 14 C -0.068 4.068 15 C -0.247 4.247 16 C -0.074 4.074 17 C -0.159 4.159 18 C -0.116 4.116 19 C -0.231 4.231 20 C 0.118 3.882 21 N -0.429 5.429 22 C -0.072 4.072 23 H 0.071 0.929 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.230 0.770 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.080 -17.805 2.451 18.235 hybrid contribution 0.560 1.429 0.066 1.536 sum 3.640 -16.376 2.517 16.964 Atomic orbital electron populations 1.69955 1.06082 1.26806 1.50482 1.25032 0.94844 0.99294 0.95230 0.86655 0.79592 0.83123 0.78617 1.20222 1.21229 1.20230 1.21198 0.92952 0.91078 1.51070 0.92740 1.19072 0.93893 0.91182 0.97321 1.21610 0.99180 0.93336 1.00502 1.22196 0.98270 0.94239 1.03145 1.22117 0.94733 0.81433 1.03705 1.44047 1.46646 1.19288 1.05525 1.21807 1.01292 0.92301 0.91419 1.21576 1.08921 1.00858 0.93372 1.19020 1.00516 0.94270 0.93620 1.19962 1.03465 1.00126 0.92326 1.20274 0.99718 0.96215 0.95358 1.20157 1.06891 0.97777 0.98293 1.16890 0.94433 0.87822 0.89036 1.42860 1.68129 1.21476 1.10443 1.17870 1.05298 0.96504 0.87508 0.92869 0.96589 0.96632 0.93276 0.92961 0.91624 0.91363 0.88938 0.90251 0.81762 0.83929 0.86778 0.86572 0.86308 0.77007 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.14 -2.26 5.03 -26.73 -0.13 -2.39 16 12 C 0.10 1.33 5.29 -4.04 -0.02 1.31 16 13 N -0.47 -6.64 2.79 -114.29 -0.32 -6.96 16 14 C 0.06 0.74 11.26 -16.76 -0.19 0.55 16 15 C -0.22 -2.85 11.08 -37.66 -0.42 -3.27 16 16 C -0.07 -1.00 6.37 -105.15 -0.67 -1.67 16 17 C -0.14 -1.81 10.05 -39.58 -0.40 -2.21 16 18 C -0.10 -1.18 9.97 -39.97 -0.40 -1.58 16 19 C -0.21 -2.68 9.87 -39.33 -0.39 -3.07 16 20 C 0.22 3.21 6.77 -83.61 -0.57 2.64 16 21 N -0.89 -11.31 8.92 32.50 0.29 -11.02 16 22 C 0.04 0.54 6.81 -83.78 -0.57 -0.03 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.14 7.16 -51.93 -0.37 0.76 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.08 0.99 6.40 -51.93 -0.33 0.65 16 32 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.40 5.25 4.30 -40.82 -0.18 5.08 16 38 H 0.40 4.18 8.85 -40.82 -0.36 3.82 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -31.57 314.93 -9.44 -41.01 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.43 Total: 6.73 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -4.44 Total: -24.83 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.71 Total: -44.03 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.57 -9.44 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385401465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.361 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds